BAC Information

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BAC

Clone NameB6Ng01-197K13
Chromosome7 (Build37)10 (Build37)
Map Location 138,165,986 - 138,166,41892,079,752 - 92,080,952
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2, LOC619876, Btbd16, EG434249, Plekha1, Htra1
Downstream geneDmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197K13.bB6Ng01-197K13.g
ACCGA019464GA019465
length9931,194
definitionB6Ng01-197K13.b B6Ng01-197K13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(138,165,986 - 138,166,418)(92,079,752 - 92,080,952)
sequence
gaattctgggactttccattgtcagattagctggactatggcctgtgtct
tagtcagggtttctattcctgcataaacatcatgaccaagaagcaagttg
gggaggaaagggtttattcggcttacacttccatactgctaattcatcac
caaggaagtcaggactggaactcaagcaggttaggaagctggagctgatg
cagaggccatggagggatgttccttactggcttgcttcccctggcttgct
caacctgctctcttatagaaccaaaactaccagctcagagatggtctcac
ccaaaaggggcctttcccccttgatcactaattgagaaaatgccttacag
ctggatctcgtggaggcacttccccaactgaagctcctttctctgtgata
actccagcctgtgtcaagttgacacaaaactagccagtgcagcctataag
ccactcaaataagattttctataaatatcgtcagttctgttcctgtaaga
gcccttgctaaaaacaaaacaaaacaaaacaaaaaacaaaacaaaacaaa
acaaaacaaaacaacttttgttttcagttaatgtcttgcattaaactcat
accaatacttctgccccagtttcctgggtgttgggattactagagtgagc
tattgtgcccagtttatttacttttattgttatgaaacatctcactttta
atgcaggaatagtcttagtgtctaccttttccccccaccacataatccag
tcttaagctttcttgctggtttcagtgttagagagttgtgttttctgctt
caagcattcttttcttcatgtgttccagttctccctactttagatctcag
cattttaggccaaattccaggaaaaaaaatcagctaataacaccaaaagc
agctgcagattacacaaggcatatactgcttgctccccgtcttcatttta
tggttgttcctcacagcttccagaagctggagagactcttttc
gaattcaaatcttcatgcttgcacttttatccactgaggcatctccccag
cccatcctctatattctttaaagccctttggaagaagttgtattgtaagg
acccaaactatgggcgtgtccttgctctaagaattccaaagttactgaag
ttgtaaatttgtaagtagatatggtgaaattcactagactttctctgggc
caatacactaaattctctgtggaagaaagtagctccgagtggcacgctgt
tgatgtaatggctggctggctgatatgctaccagtatctttgtaccagag
cagcagtaagcaacatacataacctggcacgttctctggcctaaggcagc
tggccctctatcctaatttgccccttgctgtggtttttatccctcttctc
tcagatgagttgtctgtgctatctttatgtgttctatacacaaagcttta
tatccctgtataagagaatttgggttttatgtaaaaggcctgaaatgctt
cagacccagagaggatctagccagacttgcctgaaaccaccaaaaccatg
agtcaaataattctttcctttgcacctgacaaatgtctgagtaacacgtt
tgctttcataataatgactttcatttagtcccatcctcacacaattgaca
taatctcttaggattatcactcacgcccaccattcccatgtggataaagt
gagatgttgttaattttaataagaacatcacttaataagtacattagaat
tacttgagtaattttctatatatgtacgtacatacacacagagcacctct
agttttcttgtggctatagcttacatgttactttttttttccctatgtta
cttttaatttttcagtatcttagattctaatgagttttttaaagatagca
tagagttgagtcttattagctatttattagctagtcattattttattttt
tgatttttactccattcatatttaatagaaatattggtggctagatgtgt
ttttcctccattactgtgtggttaatagtgctcttgatttcatatttaca
tttgatatagccatgactataggttgaattcaatgttttcacatccctca
tcaatttcttatacctaatttcttccctatttttctgcatttttcctaga
cctatttattagtaatttcaacctcttggagtgaaatttttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_138165986_138166418
seq2: B6Ng01-197K13.b_89_591 (reverse)

seq1  ----------------------GTTTTGTTTTGTTTTT------------  16
                            ||||||||||||||||            
seq2  GTTTTGTTTTGTTTTTTGTTTTGTTTTGTTTTGTTTTTAGCAAGGGCTCT  50

seq1  ----------------------------TAAAATTTTTTCT------CTT  32
                                   ||||| || | |      |||
seq2  TACAGGAACAGAACTGACGATATTTATAGAAAATCTTATTTGAGTGGCTT  100

seq1  TCCACCTGTACTGGCTAGTTTTGTGTCAACTTGACACA-GCTGGGGTTAT  81
           ||| ||||||||||||||||||||||||||||| ||||| |||||
seq2  ATAGGCTGCACTGGCTAGTTTTGTGTCAACTTGACACAGGCTGGAGTTAT  150

seq1  CACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTC  131
      ||||||||||||||||||||||| |||| |||||||| |||||||| || 
seq2  CACAGAGAAAGGAGCTTCAGTTGGGGAAGTGCCTCCACGAGATCCAGCTG  200

seq1  TAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTG  181
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTTTGGGTG  250

seq1  GTACCATCTCTGGGCTGGTAGTCTTGGGTTCTATAAGAGAGCAGGCTGAG  231
        |||||||||| ||||||||| || ||||||||||||||||||| ||||
seq2  AGACCATCTCTGAGCTGGTAGT-TTTGGTTCTATAAGAGAGCAGGTTGAG  299

seq1  CAAGCCAGGGGAGGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCA  281
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  CAAGCCAGGGGAAGCAAGCCAGTAAGGAACATCCCTCCATGGCCTCTGCA  349

seq1  TCGGCTCCTGCTTTCTGACCTGCTTGAGTTCCAGTCCT-ACTTCCTTGGT  330
      || ||||| |||| || ||||||||||||||||||||| |||||||||||
seq2  TCAGCTCCAGCTTCCTAACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGT  399

seq1  GATGAA-CAGCAGTATGGAAGTGTAAGCCGAATAAACCCTTTCCTCCCCA  379
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTAGCAGTATGGAAGTGTAAGCCGAATAAACCCTTTCCTCCCCA  449

seq1  ACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAG  429
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTTGCTTCTTGGTCATGATGTTTATGCAGGAATAGAAACCCTGACTAAG  499

seq1  ACAC  433
      ||||
seq2  ACAC  503

seq1: chr10_92079752_92080952
seq2: B6Ng01-197K13.g_65_1258

seq1  GAATTCAAATCTTCATGCTTGCACTTTTATCCACTGAGGCATCTCCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCTTCATGCTTGCACTTTTATCCACTGAGGCATCTCCCCAG  50

seq1  CCCATCCTCTATATTCTTTAAAGCCCTTTGGAAGAAGTTGTATTGTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTCTATATTCTTTAAAGCCCTTTGGAAGAAGTTGTATTGTAAGG  100

seq1  ACCCAAACTATGGGCGTGTCCTTGCTCTAAGAATTCCAAAGTTACTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAACTATGGGCGTGTCCTTGCTCTAAGAATTCCAAAGTTACTGAAG  150

seq1  TTGTAAATTTGTAAGTAGATATGGTGAAATTCACTAGACTTTCTCTGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATTTGTAAGTAGATATGGTGAAATTCACTAGACTTTCTCTGGGC  200

seq1  CAATACACTAAATTCTCTGTGGAAGAAAGTAGCTCCGAGTGGCACGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACACTAAATTCTCTGTGGAAGAAAGTAGCTCCGAGTGGCACGCTGT  250

seq1  TGATGTAATGGCTGGCTGGCTGATATGCTACCAGTATCTTTGTACCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAATGGCTGGCTGGCTGATATGCTACCAGTATCTTTGTACCAGAG  300

seq1  CAGCAGTAAGCAACATACATAACCTGGCACGTTCTCTGGCCTAAGGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTAAGCAACATACATAACCTGGCACGTTCTCTGGCCTAAGGCAGC  350

seq1  TGGCCCTCTATCCTAATTTGCCCCTTGCTGTGGTTTTTATCCCTCTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTCTATCCTAATTTGCCCCTTGCTGTGGTTTTTATCCCTCTTCTC  400

seq1  TCAGATGAGTTGTCTGTGCTATCTTTATGTGTTCTATACACAAAGCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGAGTTGTCTGTGCTATCTTTATGTGTTCTATACACAAAGCTTTA  450

seq1  TATCCCTGTATAAGAGAATTTGGGTTTTATGTAAAAGGCCTGAAATGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTGTATAAGAGAATTTGGGTTTTATGTAAAAGGCCTGAAATGCTT  500

seq1  CAGACCCAGAGAGGATCTAGCCAGACTTGCCTGAAACCACCAAAACCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCAGAGAGGATCTAGCCAGACTTGCCTGAAACCACCAAAACCATG  550

seq1  AGTCAAATAATTCTTTCCTTTGCACCTGACAAATGTCTGAGTAACACGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAATAATTCTTTCCTTTGCACCTGACAAATGTCTGAGTAACACGTT  600

seq1  TGCTTTCATAATAATGACTTTCATTTAGTCCCATCCTCACACAATTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCATAATAATGACTTTCATTTAGTCCCATCCTCACACAATTGACA  650

seq1  TAATCTCTTAGGATTATCACTCACGCCCACCATTCCCATGTGGATAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCTTAGGATTATCACTCACGCCCACCATTCCCATGTGGATAAAGT  700

seq1  GAGATGTTGTTAATTTTAATAAGAACATCACTTAATAAGTACATTAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTTGTTAATTTTAATAAGAACATCACTTAATAAGTACATTAGAAT  750

seq1  TACTTGAGTAATTTTCTATATATGTACGTACATACACACAGAGCACCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAGTAATTTTCTATATATGTACGTACATACACACAGAGCACCTCT  800

seq1  AGTTTTCTTGTGGCTATAGCTTACATGTTAC-TTTTTTTTCCCTATGTTA  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGTTTTCTTGTGGCTATAGCTTACATGTTACTTTTTTTTTCCCTATGTTA  850

seq1  CTTTTAATTTTTCAGTATCTTAGATTCTAATGAGTTTTTTAAAGATAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATTTTTCAGTATCTTAGATTCTAATGAGTTTTTTAAAGATAGCA  900

seq1  TAGAGTTGAGTCTTATTAGCTATTTATTAGCTAGTCA-TATTT--ATTTT  946
      ||||||||||||||||||||||||||||||||||||| |||||   ||||
seq2  TAGAGTTGAGTCTTATTAGCTATTTATTAGCTAGTCATTATTTTATTTTT  950

seq1  TGATTTTTACTCCATTCATATTTAATAGAAATTATTGTGGCTAGATGTGT  996
      ||||||||||||||||||||||||||||||||  | ||||||||||||| 
seq2  TGATTTTTACTCCATTCATATTTAATAGAAATATTGGTGGCTAGATGTG-  999

seq1  TTTTTCCTCCATTTACTGTGTTGGTTATAGTTGCTCTTTGATTTCATATT  1046
      ||||||||||| ||||||||| | | |||| ||||| |||||||||||||
seq2  TTTTTCCTCCA-TTACTGTGTGGTTAATAG-TGCTC-TTGATTTCATATT  1046

seq1  TACAATTTTTGATATAGCCATGACTATA-GTTGAATTTTCATGTTTTCAA  1095
      ||||   ||||||||||||||||||||| |||||| ||  |||||||| |
seq2  TACA---TTTGATATAGCCATGACTATAGGTTGAA-TTCAATGTTTTC-A  1091

seq1  CATCCCTCATC-ATTTCTTATACTTAATTTTCTTCCCTTAATTTTTCTGT  1144
      ||||||||||| ||||||||||| ||| ||||||||||  ||||||||| 
seq2  CATCCCTCATCAATTTCTTATACCTAA-TTTCTTCCCT--ATTTTTCTGC  1138

seq1  ATTTTTTTTCTAAATACTA-TTATTATATAATTTCAACTCCTTG--GTTA  1191
      |  ||||| ||| |  ||| ||||||  ||||||||||  ||||  || |
seq2  A--TTTTTCCTAGA-CCTATTTATTA-GTAATTTCAACCTCTTGGAGTGA  1184

seq1  GATTTTTCTG  1201
       |||||||||
seq2  AATTTTTCTG  1194