BAC Information

Click to search

BAC

Clone NameB6Ng01-198H11
Chromosome10 (Build37)
Map Location 47,770,417 - 47,771,582
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041632, LOC668252, LOC100042387, LOC100041663, LOC100042398
Downstream geneLOC546562, LOC100041689
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198H11.bB6Ng01-198H11.g
ACCGA020058GA020059
length6421,153
definitionB6Ng01-198H11.b B6Ng01-198H11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcataaataaacatttaagaatattgccctcaattttgtgtgaggt
aacccaatcacaaaagaagtcacttgatatgcactcactgataagtggat
attagcccaaaaaacctagaatacccaagatacaatttgcaaaacaaaag
taactcaagaagaaggaagaccaatgtgtggatacttccttcctctctag
aatagggaataaaatacccatggaaggagatacagagacaaagtttggag
ctaagatgaaagaatggaccatccagagactgccccacccggggagttca
tctcataatcagccaccaaacacagacactattgtatatgccaacaagat
tttgctgaaagaaccctgatatagctgtctcttgtgaggctatgccattg
tctggcaaatacagaagtggatgctcacagtcatctataggatggaacac
agggccctaaatggaggagctagagaaagtacccaaggagctgaaggggt
ctgcaatcctataggtggaacaacaatatgaactaatcagtaccctcaga
gctcctgtctctagctgcatatgtagcagaagatggccctagtcagccat
cattgggaagaaaggcccctttggccttgcaaactttatatg

gaattccatctcactaaaacatgtcctgaaaaaggtacaacattctcttt
caagtaattttttttaactttttaccagatactaaaataaaaggcttaaa
tttgatctttcaaaatatttattttgtgtagtaaatcataaacaagatgg
cctttttttttttttttttgcacacagtttctttgtaggtagcatactta
agtaattcatcaacttttgtgaaaaataaaggatgaaaaatatttatttc
tgcttcttctttagttattgctttcttcttcatacctgcctccaaagcat
caaatcttttatgcttgttatcagtttctggtatctttcttcagtgtggc
aatataaaccttaatacatataacaaatagattattaattcatttaaatg
cagatttttcctggtttcttatgtaaaatggaactttttattctattgat
gtgttgacattaaaataaaatgtattaacaaatacatccatacagggaat
gaggaagttcaaaatttgattccaataatagcatcttattttcttaaaat
tggtgctgttgagattgctgtattttaaaaaacagaatatgataaatgtg
ataaatatgttgacctcacaagaataatttatatagactatattagcagt
atccagaaggaatgctggacaatgaacataggtaactgagaactgatctg
cctgaatgtgtgtctaaaaagagaagagaaaggaacaatagcttaatggc
ccatgaaaaattataatataatcagattaggcaatgacttttaaactgcc
atgagcatatttcatatttaatgattaattatatattataatttttatgt
ttttattactttataaattttatacttacatataatataatatattttat
tttataataaaagttttatattactttaacatttacttttaatacaataa
tttaattagaatgcattgtctcattaagaattaaaataatttaaatctag
aattatttttaactatgtgtggttttcaattatgaatatgattatagtac
ccacagagccatatggaatgtactctaggcttgagaatcaagttaagtaa
ggtctcagtgtaggtaatgtgcatgattcagttccaatgacttagagtca
taa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_47770417_47771582
seq2: B6Ng01-198H11.g_65_1217 (reverse)

seq1  TTATGACTCTATAATGTCCTTTTGTGGACTTGAATTCAATTCACATTACC  50
      ||||||||||   | ||| |    ||||  |||||   || |||||||||
seq2  TTATGACTCT---AAGTCAT----TGGAACTGAAT--CATGCACATTACC  41

seq1  TACCACTGAGAACCTAAACCCTACTTGTATCTCCAGGCTTAGAGTTACCA  100
      || |||||||| | |  ||   |||||  ||| || || ||||||   ||
seq2  TA-CACTGAGACCTT--ACTTAACTTGATTCT-CAAGCCTAGAGT--ACA  85

seq1  TTTCATATGGGCTCTGTGGGTACTTATAATCATATTCATATTTGAAAAAC  150
      || ||||| |||||||||||||| |||||||||||||||| ||| |||||
seq2  TTCCATAT-GGCTCTGTGGGTAC-TATAATCATATTCATAATTG-AAAAC  132

seq1  CACACATAGTT-AAAATAATTCTAGA-TTAAATTATTTTAATTCTT-ATG  197
      ||||||||||| |||||||||||||| ||||||||||||||||||| |||
seq2  CACACATAGTTAAAAATAATTCTAGATTTAAATTATTTTAATTCTTAATG  182

seq1  AGACAATGCATTCT-ATTAAATTATTGTATTAAAAGTAAATGTTAAAGTA  246
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGACAATGCATTCTAATTAAATTATTGTATTAAAAGTAAATGTTAAAGTA  232

seq1  ATATAAAAC-TTTATTATAAAATAAAATATATTATATTATATGTAAGTAT  295
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAACTTTTATTATAAAATAAAATATATTATATTATATGTAAGTAT  282

seq1  AAAATTTATAAAGTAATAAAAACATAAAAATTATAATATATAATTAATCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTATAAAGTAATAAAAACATAAAAATTATAATATATAATTAATCA  332

seq1  TTAAATATGAAATATGCTCATGGCAGTTTAAAAGTCATTGCCTAATCTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATGAAATATGCTCATGGCAGTTTAAAAGTCATTGCCTAATCTGA  382

seq1  TTATATTATAATTTTTCATGGGCCATTAAGCTATTGTTCCTTTCTCTTCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTATAATTTTTCATGGGCCATTAAGCTATTGTTCCTTTCTCTTCT  432

seq1  CTTTTTAGACACACATTCAGGCAGATCAGTTCTCAGTTACCTATGTTCAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGACACACATTCAGGCAGATCAGTTCTCAGTTACCTATGTTCAT  482

seq1  TGTCCAGCATTCCTTCTGGATACTGCTAATATAGTCTATATAAATTATTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGCATTCCTTCTGGATACTGCTAATATAGTCTATATAAATTATTC  532

seq1  TTGTGAGGTCAACATATTTATCACATTTATCATATTCTGTTTTTTAAAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGGTCAACATATTTATCACATTTATCATATTCTGTTTTTTAAAAT  582

seq1  ACAGCAATCTCAACAGCACCAATTTTAAGAAAATAAGATGCTATTATTGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATCTCAACAGCACCAATTTTAAGAAAATAAGATGCTATTATTGG  632

seq1  AATCAAATTTTGAACTTCCTCATTCCCTGTATGGATGTATTTGTTAATAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATTTTGAACTTCCTCATTCCCTGTATGGATGTATTTGTTAATAC  682

seq1  ATTTTATTTTAATGTCAACACATCAATAGAATAAAAAGTTCCATTTTACA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTAATGTCAACACATCAATAGAATAAAAAGTTCCATTTTACA  732

seq1  TAAGAAACCAGGAAAAATCTGCATTTAAATGAATTAATAATCTATTTGTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACCAGGAAAAATCTGCATTTAAATGAATTAATAATCTATTTGTT  782

seq1  ATATGTATTAAGGTTTATATTGCCACACTGAAGAAAGATACCAGAAACTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATTAAGGTTTATATTGCCACACTGAAGAAAGATACCAGAAACTG  832

seq1  ATAACAAGCATAAAAGATTTGATGCTTTGGAGGCAGGTATGAAGAAGAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAGCATAAAAGATTTGATGCTTTGGAGGCAGGTATGAAGAAGAAA  882

seq1  GCAATAACTAAAGAAGAAGCAGAAATAAATATTTTTCATCCTTTATTTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAACTAAAGAAGAAGCAGAAATAAATATTTTTCATCCTTTATTTTT  932

seq1  CACAAAAGTTGATGAATTACTTAAGTATGCTACCTACAAAGAAACTGTGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGTTGATGAATTACTTAAGTATGCTACCTACAAAGAAACTGTGT  982

seq1  GCAAAAAAAAAAAAAAAAAGGCCATCTTGTTTATGATTTACTACACAAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAAAAAAAAAAAAAGGCCATCTTGTTTATGATTTACTACACAAAA  1032

seq1  TAAATATTTTGAAAGATCAAATTTAAGCCTTTTATTTTAGTATCTGGTAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTTGAAAGATCAAATTTAAGCCTTTTATTTTAGTATCTGGTAA  1082

seq1  AAAGTTAAAAAAAATTACTTGAAAGAGAATGTTGTACCTTTTTCAGGACA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAAAAAAAATTACTTGAAAGAGAATGTTGTACCTTTTTCAGGACA  1132

seq1  TGTTTTAGTGAGATGGAATTC  1166
      |||||||||||||||||||||
seq2  TGTTTTAGTGAGATGGAATTC  1153


| Home | SequenceCutter | Blast | Download |