BAC Information

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BAC

Clone NameB6Ng01-199E13
Chromosome10 (Build37)18 (Build37)
Map Location 17,062,146 - 17,062,60721,784,573 - 21,785,519
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC382457, LOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199E13.bB6Ng01-199E13.g
ACCGA020654GA020655
length1,019981
definitionB6Ng01-199E13.b B6Ng01-199E13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,062,146 - 17,062,607)(21,784,573 - 21,785,519)
sequence
gaattccacctctcaaattgacataaaaccagccagaacattcccacctg
catgttaactgttgtttttcattgcatgtttgaatttttatgtagatctg
gtagaaaatctctgtctctgtctctctgtctctgtctctctttttttgtc
tgtctctgtctctgtctcactctgtttctgtctctctctgtctctgtgtg
tgtctctctctcacttatacacacacacacacacacaccttcaaggccat
acccatggacccatggctgccacaaaactgattctttcgttgccttaaaa
ctctcctatgcagcccttctggtcaaggccagcactgggtcaccttgggc
gcagagtctgctgacactcccaaggtccccagagcactttccacgggaac
ttaggacctctggtgagtggaacacaacttctgccaggaggcaggttcga
acaccagatatctgggcaccttccctgcaaaagaagagcttgcctgcaga
gagtgctctgaccactgcaactcgggagagagctagtctcccaggcctgc
tgatagagactaacagaatcacaagaagaacaagctgtcaccagagacaa
ctataacaactgactccagagattaccagatggcaagaggcaaactaaga
atctcactaacagaagccaagaccactcaccatcatcagaatgcagcact
cccacttcacccagtcctgggcaccccaacacagccaaaaagctagactg
ggatttaaaagcatatctcatgatgatggtagaggacatcaagaaggatt
ttaataactcacttcaagaaatacaggagaacactgctaaagagttacaa
gtccttaaagaaaaacacaaaaacacacacacaaaaaaaagacattgaag
aaaaacaggaaaacacatccaaacaggtgatggaaatgaacaaaaccata
ctagacctaaaagcgaagtagacaaaataaaggaaacccaaaattgaggc
aatgctagaagatagaaaa

gaattcttttaatgaaactctggtggctttggatgcgtggagtgcattga
gcgtgcctcggtagaaaaagcaccttctggaaaaaagacactcctagcca
tcaatagagggagctgtaccaatagataaatgacccacacaattagcagc
ttgaaacactcatttttccatcctttggatgtaagtcaacaaaagtaaaa
aacacactggcccaactgcttcaagggaaactgcacactgacatcttctg
gactgctagctggcacacacaaacagaagaggtaacaaaggttcccacct
ggtgtgaatttcagtcatcagggacttaagagacaaatgaatatctgcat
caagcttttcttttttttttatttggaagtaatacacatataagtcctgt
gctatgcaattttgtaaatgcatggtcacagaattgattatgtgggtttt
gaatctttaaactgttatttggggttcaaataatcaagcattctatttgt
gtaagagaagtcatgttgaaagcagtttggtatacgtaaattagtgacag
tagcctagtcagtggaagtcacaattttgtgactgtcctaatgtagttac
atgtatacataatgtatacatgctgtcagtccgtccaggggggaccaatc
tccacataactggtacggaggaaagggcactaagaagtggggtttgctaa
cacaaagtaataaggctagcttatatttatttttttaaagtactgttttt
aaaatacattgaatagatgaccaaaagagatacatgcttggctcatgtat
gctgtcaagtcatcttattccctggctaaacccagttttccctggaccaa
tctttgctaatgtttttctacagtggtatttattgttccttcattgagga
tgaaaagaaggcccagaagtcttttgttggcatcttatttcaacatgtcc
aattgttcctccagaaactgggacttttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_17062146_17062607
seq2: B6Ng01-199E13.b_500_956 (reverse)

seq1  TTTTCCTGTTTTTCTTTAAGGACTTCTATCTGTTTGGTTGTGTTTTCCTG  50
      |||||||||||||||| || | ||| | | ||| ||  ||||||||  ||
seq2  TTTTCCTGTTTTTCTTCAATGTCTTTTTTTTGTGTG--TGTGTTTTTGTG  48

seq1  TTTTTCTTTAAGGACTTGTAACTCTTTAGCAGTGTTCTCCTGTATTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTTCTTTAAGGACTTGTAACTCTTTAGCAGTGTTCTCCTGTATTTCTT  98

seq1  TAAGTGAGCTATTAAAGTCCTTCTTGATGTCCTCTACCATCATCATGAGA  150
       ||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  GAAGTGAGTTATTAAAATCCTTCTTGATGTCCTCTACCATCATCATGAGA  148

seq1  TATGCTTTTAAATCCGGGTCTAGCTTTTCGGTTGTGTTGGGGTGCCCAGG  200
      |||||||||||||||  ||||||||||| || ||||||||||||||||||
seq2  TATGCTTTTAAATCCCAGTCTAGCTTTTTGGCTGTGTTGGGGTGCCCAGG  198

seq1  ACTGGGCAAGATGGGTGTGCTGCGTTCTGATGATGGTGAGTGTTTTTGGT  250
      ||||||  |  |||| ||||||| |||||||||||||||||| | |||| 
seq2  ACTGGGTGAAGTGGGAGTGCTGCATTCTGATGATGGTGAGTGGTCTTGGC  248

seq1  TTCTGTTAGTAAGATTCTTACATTTGCCTTTCGCCATCTGGTAATCTCTG  300
      |||||||||| |||||||||  ||||||| | ||||||||||||||||||
seq2  TTCTGTTAGTGAGATTCTTA-GTTTGCCTCTTGCCATCTGGTAATCTCTG  297

seq1  GAGTTAGTTGTTATAGTTGTCTCTGGTTAGAGATTGTTCCTCTCGTGATT  350
      |||| |||||||||||||||||||||| | || |||||| ||| ||||||
seq2  GAGTCAGTTGTTATAGTTGTCTCTGGTGACAGCTTGTTCTTCTTGTGATT  347

seq1  CTGTTAGCCTCTATCAGCAGACCTGGGAGACTAGTGCTCTCCTCTGAGTT  400
      ||||||| |||||||||||| ||||||||||||  ||||||  | |||||
seq2  CTGTTAGTCTCTATCAGCAGGCCTGGGAGACTA--GCTCTCTCCCGAGTT  395

seq1  TCAGTGGTCAGAGCACTCTCTGTAGGCAAGCTCTCCTCTTACAGGGAAGG  450
       ||||||||||||||||||||| ||||||||||| || || |||||||||
seq2  GCAGTGGTCAGAGCACTCTCTGCAGGCAAGCTCTTCTTTTGCAGGGAAGG  445

seq1  TGCACAGATATC  462
      ||| ||||||||
seq2  TGCCCAGATATC  457


seq1: chr18_21784573_21785519
seq2: B6Ng01-199E13.g_67_1024

seq1  GAATTCTTTTAATGAAACTCTGGTGGCTTTGGATGCGTGGAGTGCATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAATGAAACTCTGGTGGCTTTGGATGCGTGGAGTGCATTGA  50

seq1  GCGTGCCTCGGTAGAAAAAGCACCTTCTGGAAAAAAGACACTCCTAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCCTCGGTAGAAAAAGCACCTTCTGGAAAAAAGACACTCCTAGCCA  100

seq1  TCAATAGAGGGAGCTGTACCAATAGATAAATGACCCACACAATTAGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGAGGGAGCTGTACCAATAGATAAATGACCCACACAATTAGCAGC  150

seq1  TTGAAACACTCATTTTTCCATCCTTTGGATGTAAGTCAACAAAAGTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACACTCATTTTTCCATCCTTTGGATGTAAGTCAACAAAAGTAAAA  200

seq1  AACACACTGGCCCAACTGCTTCAAGGGAAACTGCACACTGACATCTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACTGGCCCAACTGCTTCAAGGGAAACTGCACACTGACATCTTCTG  250

seq1  GACTGCTAGCTGGCACACACAAACAGAAGAGGTAACAAAGGTTCCCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTAGCTGGCACACACAAACAGAAGAGGTAACAAAGGTTCCCACCT  300

seq1  GGTGTGAATTTCAGTCATCAGGGACTTAAGAGACAAATGAATATCTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAATTTCAGTCATCAGGGACTTAAGAGACAAATGAATATCTGCAT  350

seq1  CAAGCTTTTCTTTTTTTTTTATTTGGAAGTAATACACATATAAGTCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTTTCTTTTTTTTTTATTTGGAAGTAATACACATATAAGTCCTGT  400

seq1  GCTATGCAATTTTGTAAATGCATGGTCACAGAATTGATTATGTGGGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCAATTTTGTAAATGCATGGTCACAGAATTGATTATGTGGGTTTT  450

seq1  GAATCTTTAAACTGTTATTTGGGGTTCAAATAATCAAGCATTCTATTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTAAACTGTTATTTGGGGTTCAAATAATCAAGCATTCTATTTGT  500

seq1  GTAAGAGAAGTCATGTTGAAAGCAGTTTGGTATACGTAAATTAGTGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGAAGTCATGTTGAAAGCAGTTTGGTATACGTAAATTAGTGACAG  550

seq1  TAGCCTAGTCAGTGGAAGTCACAATTTTGTGACTGTCCTAATGTAG-TAC  599
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAGCCTAGTCAGTGGAAGTCACAATTTTGTGACTGTCCTAATGTAGTTAC  600

seq1  ATGTATACATAATGTATACATGCTGTCAGTCCGTCCAGGGGGGACCAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATACATAATGTATACATGCTGTCAGTCCGTCCAGGGGGGACCAATC  650

seq1  TCCACATAACTGGTACGGAGGAAAGGGCACTAAGAAGTGGGGTTTGCTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATAACTGGTACGGAGGAAAGGGCACTAAGAAGTGGGGTTTGCTAA  700

seq1  CACAAAGTAATAAGGCTAGCTTATATTTATTTTTTTAAAGTACTG-TTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACAAAGTAATAAGGCTAGCTTATATTTATTTTTTTAAAGTACTGTTTTT  750

seq1  AAAATACATTGAATAGATGACCAAAAGAGATACATGCTTGGCTCATGTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACATTGAATAGATGACCAAAAGAGATACATGCTTGGCTCATGTAT  800

seq1  GCTGTCAAAGTCATCTTATTCCCTGGCT-AAGCCAG-TTTCCCTGGACCA  846
      |||||| ||||||||||||||||||||| || |||| |||||||||||||
seq2  GCTGTC-AAGTCATCTTATTCCCTGGCTAAACCCAGTTTTCCCTGGACCA  849

seq1  ATC-TTGCTAATGTTTTTCTACAGTGGTATTTA-TGTTCC-TCATTGAGG  893
      ||| ||||||||||||||||||||||||||||| |||||| |||||||||
seq2  ATCTTTGCTAATGTTTTTCTACAGTGGTATTTATTGTTCCTTCATTGAGG  899

seq1  ATGAAAAGAAGGCCCAG-AGTCTTT--GTGGCATCT--ATTCACAATGTC  938
      ||||||||||||||||| |||||||   ||||||||   ||||  |||||
seq2  ATGAAAAGAAGGCCCAGAAGTCTTTTGTTGGCATCTTATTTCAACATGTC  949

seq1  CAAATGTTC  947
      ||| |||||
seq2  CAATTGTTC  958


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