BAC Information

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BAC

Clone NameB6Ng01-199E22
Chromosome10 (Build37)
Map Location 5,019,424 - 5,160,681
singlet/doubletdoublet
Overlap geneSyne1
Upstream geneRgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1
Downstream geneEsr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199E22.bB6Ng01-199E22.g
ACCGA020672GA020673
length791,095
definitionB6Ng01-199E22.b B6Ng01-199E22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,019,424 - 5,019,502)(5,159,595 - 5,160,681)
sequence
tctaatccaatcacaacaaggaattctctagtccaatcacaagccacatc
cggctgtccccctgagcgtgggcaatggg
gaattcttgcagcatctgtctgcaacccctcggctgacagagcttggtag
tacgcaatgtcctgggtggagagtagagtgtcagagtgaaggaaaggcaa
gttcagtgcgcttaggaaactattcttaatgcagtggaaaggcttaagat
ttacattcattgttggtgccgtgaaaataacatttaaaaataatgcttga
aaataacatttaaaaataaagaatttaaaagataacaagtgcattataat
tgctttagcaatctcataaatatgaaaaaatgtatatcaacatttcacat
tgccaaagtaccttcttgttttatatttggtaaaatggtaatgcaaacta
ttcatgcagtagcccctatttaacaggtttatttctatttaatcagttac
acttctatttaaccagcacacccatatttaactagtgtgtctctagttaa
catctaactatctagtacacttctatttaacaaacacacctctaatttac
cagcacatctccacttagccaaaatatctatatttaactagtacatcttt
actctatctggatatctgtaattagccagcatacctctatttaactagca
ctgctcaaataaccaatgcatctctaattaaccagtatactctatttaac
cagtacattttaattaattgggcacctctatttagctagtacacctcgaa
ttaactactatgcctatattaaaccaatatagaaaaggggtgggctctac
ctgatctagttcccaaaatggagttcacaacattggttaacattctgaat
aagtattgaaagggtttttttgttgtttatatgtgtgttttgtgtgtttg
tttaaaagataaatgtacgagaaggcaggaggattgggaggagtccaagg
atacgcttcaggtacataccaagtttgaagctagcctgggcttaaaggag
actgtcttcaaaaatgaatccatctagtatctattaattttgtaatgagg
tccatattttttactatttgtggagtggatttatttccacaaaatatatt
acttcaaatattaattggtacaacatcgtagaaactttaataatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_5019424_5019502
seq2: B6Ng01-199E22.b_48_126

seq1  TCTAATCCAATCACAACAAGGAATTCTCTAGTCCAATCACAAGCCACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCCAATCACAACAAGGAATTCTCTAGTCCAATCACAAGCCACATC  50

seq1  CGGCTGTCCCCCTGAGCGTGGGCAATGGG  79
      |||||||||||||||||||||||||||||
seq2  CGGCTGTCCCCCTGAGCGTGGGCAATGGG  79

seq1: chr10_5159595_5160681
seq2: B6Ng01-199E22.g_65_1159 (reverse)

seq1  AATTATT--AGTTTCTTAGATTTTTGTACCATTTAATATTTGAAGTAATT  48
      |||||||  |||||||  || | |||||||| |||||||||||||||| |
seq2  AATTATTAAAGTTTCTACGA-TGTTGTACCAATTAATATTTGAAGTAA-T  48

seq1  ATATTTTTGTGTGAAT-AATTCACT-CACAAATAGT--AAAATATGG-CC  93
      ||| |||||||  ||| ||| |||| ||||||||||  ||||||||| ||
seq2  ATA-TTTTGTGGAAATAAATCCACTCCACAAATAGTAAAAAATATGGACC  97

seq1  TCATTTACAAAATTAATAG-TTCTAGATTGATTCATTTTTG-AGACAGTC  141
      ||| ||||||||||||||| | |||||| |||||||||||| ||||||||
seq2  TCA-TTACAAAATTAATAGATACTAGATGGATTCATTTTTGAAGACAGTC  146

seq1  TCCTCT-AGCCCAGGCTAGCTTCAAACTTGGTATGTACCTG-AGCGTATC  189
      |||| | |||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCTTTAAGCCCAGGCTAGCTTCAAACTTGGTATGTACCTGAAGCGTATC  196

seq1  CTTGGACTCCTCCCAATCCTCCTGCCTTCTCGTACATTTATCTTTAAAAC  239
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTGGACTCCTCCCAATCCTCCTGCCTTCTCGTACATTTATCTTTTAAAC  246

seq1  AAACACAC-AAACACACATATAAACAACAAAAAAACCCTTTCAATACTTA  288
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACAAAACACACATATAAACAACAAAAAAACCCTTTCAATACTTA  296

seq1  TTCAGAATGTTAACCAATGTTGTGAACTCCATTTTGGGAACTAGATCAGG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATGTTAACCAATGTTGTGAACTCCATTTTGGGAACTAGATCAGG  346

seq1  TAGAGCCCACCCCTTTTCTATATTGGTTTAATATAGGCATAGTAGTTAAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCCACCCCTTTTCTATATTGGTTTAATATAGGCATAGTAGTTAAT  396

seq1  TCGAGGTGTACTAGCTAAATAGAGGTGCCCAATTAATTAAAATGTACTGG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGTGTACTAGCTAAATAGAGGTGCCCAATTAATTAAAATGTACTGG  446

seq1  TTAAATAGAGTATACTGGTTAATTAGAGATGCATTGGTTATTTGAGCAGT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGAGTATACTGGTTAATTAGAGATGCATTGGTTATTTGAGCAGT  496

seq1  GCTAGTTAAATAGAGGTATGCTGGCTAATTACAGATATCCAGATAGAGTA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTAAATAGAGGTATGCTGGCTAATTACAGATATCCAGATAGAGTA  546

seq1  AAGATGTACTAGTTAAATATAGATATTTTGGCTAAGTGGAGATGTGCTGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTACTAGTTAAATATAGATATTTTGGCTAAGTGGAGATGTGCTGG  596

seq1  TAAATTAGAGGTGTGTTTGTTAAATAGAAGTGTACTAGATAGTTAGATGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAGAGGTGTGTTTGTTAAATAGAAGTGTACTAGATAGTTAGATGT  646

seq1  TAACTAGAGACACACTAGTTAAATATGGGTGTGCTGGTTAAATAGAAGTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGAGACACACTAGTTAAATATGGGTGTGCTGGTTAAATAGAAGTG  696

seq1  TAACTGATTAAATAGAAATAAACCTGTTAAATAGGGGCTACTGCATGAAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGATTAAATAGAAATAAACCTGTTAAATAGGGGCTACTGCATGAAT  746

seq1  AGTTTGCATTACCATTTTACCAAATATAAAACAAGAAGGTACTTTGGCAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCATTACCATTTTACCAAATATAAAACAAGAAGGTACTTTGGCAA  796

seq1  TGTGAAATGTTGATATACATTTTTTCATATTTATGAGATTGCTAAAGCAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATGTTGATATACATTTTTTCATATTTATGAGATTGCTAAAGCAA  846

seq1  TTATAATGCACTTGTTATCTTTTAAATTCTTTATTTTTAAATGTTATTTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGCACTTGTTATCTTTTAAATTCTTTATTTTTAAATGTTATTTT  896

seq1  CAAGCATTATTTTTAAATGTTATTTTCACGGCACCAACAATGAATGTAAA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTATTTTTAAATGTTATTTTCACGGCACCAACAATGAATGTAAA  946

seq1  TCTTAAGCCTTTCCACTGCATTAAGAATAGTTTCCTAAGCGCACTGAACT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGCCTTTCCACTGCATTAAGAATAGTTTCCTAAGCGCACTGAACT  996

seq1  TGCCTTTCCTTCACTCTGACACTCTACTCTCCACCCAGGACATTGCGTAC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCCTTCACTCTGACACTCTACTCTCCACCCAGGACATTGCGTAC  1046

seq1  TACCAAGCTCTGTCAGCCGAGGGGTTGCAGACAGATGCTGCAAGAATTC  1087
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGCTCTGTCAGCCGAGGGGTTGCAGACAGATGCTGCAAGAATTC  1095