BAC Information

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BAC

Clone NameB6Ng01-199G07
Chromosome10 (Build37)
Map Location 114,222,612 - 114,364,878
singlet/doubletdoublet
Overlap geneTrhde
Upstream gene4930473D10Rik
Downstream geneTph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199G07.bB6Ng01-199G07.g
ACCGA020738GA020739
length1,1111,117
definitionB6Ng01-199G07.b B6Ng01-199G07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,363,794 - 114,364,878)(114,222,612 - 114,223,712)
sequence
gaattccatgcatagtctcaacacccgagtatgtttctgtttggtttgct
ggttaattgactcccagacataatggtgacttgagctggaatgagtggga
gattctgtagtatttcagaaaagaagaatcaccaattctagggagttgaa
aaatgatagaaggggcttggccagcagatcaactcaattatcccttattg
atctcatgagagcactcaaatccttcagggagcacattggttaaggtact
tattttgataggcatggtggtctagtataagccgaaagtggaaatagaac
atgatgctctctggataccattaaagcctcagtgggaataatgaaactat
gtggtaagaccaagtggtacactgacctcagcacaaagactgcacagata
ttttcattgagggacaacagcaagaatgcttagagaatgcatagagatcc
aagctaactgcagggtacagaccctaggcctccaaatatcattgttctct
ctcttgtcatctcaccaaggtgtttatggcatattaattcatccaccatt
aagttttcaatcaattaataattcttgaagaaaacctctataaaatatca
caagaacatactataacgcatttataccaagaagataagagtatgtggtt
atggaatatttaggcttgtaagtatttattaaatggttttgagataacac
taatccatggagatcaaacagctactaaggtctaaagtgtgtgtgtgtgt
gtgtggttggcttaggactatgatgacaaatgtagtttgggatctttgaa
tgtttcagcatatttttaaaggcctctttcgttctctctctttcatttcc
tgcaattctttgagtatcagggaactagcagaaatgtactttttcactgc
tctctgtcatatattaatgatttttcccttttgaaaatccctgctttggg
tgtgctgctctagactctgacagatactaagtagttatcaatacaaacca
ccagctgtctgacctatttcttcatgaagcattgtgatatttggtttcaa
tcaaggacagaatattccagggcatattccaggtagcactttccattttt
ttaggtggaaa

gaattctcttctcattccagctgctaagggttgagaaaagtcattcccat
tcaccccccagtaataaaggggaaagtcagtgagaagaaaacagattgga
tttcaaaggggtgacaggaaaagagaatggagtttcaaactgcatttcca
cagttgataaacaagggttccctatggccattctgctttccgtttttttt
ggttttttttactgattatggtatttttagattatagtcttggagttttc
tttcagctgacctttcagtcttctatgcctccatgttttacctcttccac
attaaaatcactaggcagaaatgttaaaatgtttactgataactcagaga
tccttaagaagaaaaagtcacatctaaaaaatgtagagtggctttacaaa
caggttgtagcagcaagcataagtacatagggttgatgatactcttaaga
tcttctaaagaaaatatcctaggcagaagtatttctagggtactttaagc
tagctgagccactgagagtcagtcatcaagttttgaagacacaaaaggaa
atgagatgtcttcatgtttcttttctgtgtatggtccaatgagtacagcc
ttgaaatgtctgtaccagaaatcaagaagcatcagaagaattcaacattt
caaattattataagcccagaagactaaaatgccagctaggcctctacact
caacattaagggtattattttaatgattacacacatgaattcactctgta
gtttttctataatggcattaattttgtatgcaagcagattttatttttta
agcaggctccacagtgatttaaattaaaaggaacagtgcaaaaaaaaaat
tctgtagccaaaactgttttctcaaaactcaggttatttattagagctat
gaatccctacagattaaaaacacaacttttctattccactttattgttat
tatattccaaggaaaaatgcaattatagcttttgtggtagagacgaccag
aagataatttttcttaaagacatgaaaggtaaaatgggtaaagaacattc
cctggaatacagagaagaaagccttaacctctagacttactaaggagagt
tgaacattgaggctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_114363794_114364878
seq2: B6Ng01-199G07.b_33_1143 (reverse)

seq1  TTTCCA-CTTAAAAAATG--AAGTGCTA-CTGG-ATATGCC--TGAAT-T  42
      |||||| || ||||||||  |||||||| |||| |||||||   |||| |
seq2  TTTCCACCTAAAAAAATGGAAAGTGCTACCTGGAATATGCCCTGGAATAT  50

seq1  TCTGTCC-TGA-TGAAA-CAAATATCAC-ATGCTTCATG-AGAAATAGGT  87
      ||||||| ||| ||||| |||||||||| |||||||||| ||||||||||
seq2  TCTGTCCTTGATTGAAACCAAATATCACAATGCTTCATGAAGAAATAGGT  100

seq1  CAGACAGCTGGTGG-TTGTATTGATAACTACTTAGTATCTGTCAGAGTCT  136
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGACAGCTGGTGGTTTGTATTGATAACTACTTAGTATCTGTCAGAGTCT  150

seq1  AGAGCAGCACACCCAAAGCAGG--ATTTCAAA--GGGAAAATCATT-ATA  181
      ||||||||||||||||||||||   |||||||  || ||||||||| |||
seq2  AGAGCAGCACACCCAAAGCAGGGATTTTCAAAAGGGAAAAATCATTAATA  200

seq1  TATGACAGAGAGCAGTG-AAAAGTACA-TTCTGCTAGTT-CCTGATACTC  228
      ||||||||||||||||| ||||||||| ||||||||||| ||||||||||
seq2  TATGACAGAGAGCAGTGAAAAAGTACATTTCTGCTAGTTCCCTGATACTC  250

seq1  -AAGAATTGCAGGAATTGAAAGAGAGAGAACGAAAGAGGCCTTT-AAAAT  276
       |||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  AAAGAATTGCAGGAAATGAAAGAGAGAGAACGAAAGAGGCCTTTAAAAAT  300

seq1  ATGCTGAAACATTC-AAGATCCCAAACTACATTTGTCATCATAGTCCTAA  325
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATGCTGAAACATTCAAAGATCCCAAACTACATTTGTCATCATAGTCCTAA  350

seq1  GCCAACCACACACACACACACACACTTTAGACCTTAGTAGCTGTTTGATC  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACCACACACACACACACACACTTTAGACCTTAGTAGCTGTTTGATC  400

seq1  TCCATGGATTAGTGTTATCTCAAAACCA-TTAATAAATACTTACAAGCCT  424
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCCATGGATTAGTGTTATCTCAAAACCATTTAATAAATACTTACAAGCCT  450

seq1  AAATATTCCATAACCACATACTCTTATCTTCTTGGTATAAATGCGTTATA  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCCATAACCACATACTCTTATCTTCTTGGTATAAATGCGTTATA  500

seq1  GTATGTTCTTGTGATATTTTATAGAGGTTTTCTTCAAGAATTATTAATTG  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTCTTGTGATATTTTATAGAGGTTTTCTTCAAGAATTATTAATTG  550

seq1  ATTGAAAACTTAATGGTGGATGAATTAATATGCCATAAACACCTTGGTGA  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAACTTAATGGTGGATGAATTAATATGCCATAAACACCTTGGTGA  600

seq1  GATGACAAGAGAGAGAACAATGATATTTGGAGGCCTAGGGTCTGTACCCT  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAAGAGAGAGAACAATGATATTTGGAGGCCTAGGGTCTGTACCCT  650

seq1  GCAGTTAGCTTGGATCTCTATGCATTCTCTAAGCATTCTTGCTGTTGTCC  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAGCTTGGATCTCTATGCATTCTCTAAGCATTCTTGCTGTTGTCC  700

seq1  CTCAATGAAAATATCTGTGCAGTCTTTGTGCTGAGGTCAGTGTACCACTT  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGAAAATATCTGTGCAGTCTTTGTGCTGAGGTCAGTGTACCACTT  750

seq1  GGTCTTACCACATAGTTTCATTATTCCCACTGAGGCTTTAATGGTATCCA  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTACCACATAGTTTCATTATTCCCACTGAGGCTTTAATGGTATCCA  800

seq1  GAGAGCATCATGTTCTATTTCCACTTTCGGCTTATACTAGACCACCATGC  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCATCATGTTCTATTTCCACTTTCGGCTTATACTAGACCACCATGC  850

seq1  CTATCAAAATAAGTACCTTAACCAATGTGCTCCCTGAAGGATTTGAGTGC  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAAAATAAGTACCTTAACCAATGTGCTCCCTGAAGGATTTGAGTGC  900

seq1  TCTCATGAGATCAATAAGGGATAATTGAGTTGATCTGCTGGCCAAGCCCC  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGAGATCAATAAGGGATAATTGAGTTGATCTGCTGGCCAAGCCCC  950

seq1  TTCTATCATTTTTCAACTCCCTAGAATTGGTGATTCTTCTTTTCTGAAAT  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCATTTTTCAACTCCCTAGAATTGGTGATTCTTCTTTTCTGAAAT  1000

seq1  ACTACAGAATCTCCCACTCATTCCAGCTCAAGTCACCATTATGTCTGGGA  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGAATCTCCCACTCATTCCAGCTCAAGTCACCATTATGTCTGGGA  1050

seq1  GTCAATTAACCAGCAAACCAAACAGAAACATACTCGGGTGTTGAGACTAT  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTAACCAGCAAACCAAACAGAAACATACTCGGGTGTTGAGACTAT  1100

seq1  GCATGGAATTC  1085
      |||||||||||
seq2  GCATGGAATTC  1111


seq1: chr10_114222612_114223712
seq2: B6Ng01-199G07.g_65_1181

seq1  GAATTCTCTTCTCATTCCAGCTGCTAAGGGTTGAGAAAAGTCATTCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTCATTCCAGCTGCTAAGGGTTGAGAAAAGTCATTCCCAT  50

seq1  TCACCCCCCAGTAATAAAGGGGAAAGTCAGTGAGAAGAAAACAGATTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCCCAGTAATAAAGGGGAAAGTCAGTGAGAAGAAAACAGATTGGA  100

seq1  TTTCAAAGGGGTGACAGGAAAAGAGAATGGAGTTTCAAACTGCATTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGGGGTGACAGGAAAAGAGAATGGAGTTTCAAACTGCATTTCCA  150

seq1  CAGTTGATAAACAAGGGTTCCCTATGGCCATTCTGCTTTCCGTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGATAAACAAGGGTTCCCTATGGCCATTCTGCTTTCCGTTTTTTTT  200

seq1  GGTTTTTTTTACTGATTATGGTATTTTTAGATTATAGTCTTGGAGTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTTACTGATTATGGTATTTTTAGATTATAGTCTTGGAGTTTTC  250

seq1  TTTCAGCTGACCTTTCAGTCTTCTATGCCTCCATGTTTTACCTCTTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTGACCTTTCAGTCTTCTATGCCTCCATGTTTTACCTCTTCCAC  300

seq1  ATTAAAATCACTAGGCAGAAATGTTAAAATGTTTACTGATAACTCAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATCACTAGGCAGAAATGTTAAAATGTTTACTGATAACTCAGAGA  350

seq1  TCCTTAAGAAGAAAAAGTCACATCTAAAAAATGTAGAGTGGCTTTACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAGAAGAAAAAGTCACATCTAAAAAATGTAGAGTGGCTTTACAAA  400

seq1  CAGGTTGTAGCAGCAAGCATAAGTACATAGGGTTGATGATACTCTTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGTAGCAGCAAGCATAAGTACATAGGGTTGATGATACTCTTAAGA  450

seq1  TCTTCTAAAGAAAATATCCTAGGCAGAAGTATTTCTAGGGTACTTTAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAAAGAAAATATCCTAGGCAGAAGTATTTCTAGGGTACTTTAAGC  500

seq1  TAGCTGAGCCACTGAGAGTCAGTCATCAAGTTTTGAAGACACAAAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAGCCACTGAGAGTCAGTCATCAAGTTTTGAAGACACAAAAGGAA  550

seq1  ATGAGATGTCTTCATGTTTCTTTTCTGTGTATGGTCCAATGAGTACAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGTCTTCATGTTTCTTTTCTGTGTATGGTCCAATGAGTACAGCC  600

seq1  TTGAAATGTCTGTACCAGAAATCAAGAAGCATCAGAAGAATTCAACATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGTCTGTACCAGAAATCAAGAAGCATCAGAAGAATTCAACATTT  650

seq1  CAAATTATTATAAGCCCAGAAGACTAAAATGCCAGCTAGGCCTCTACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATTATAAGCCCAGAAGACTAAAATGCCAGCTAGGCCTCTACACT  700

seq1  CAACATTAAGGGTATTATTTTAATGATTACACACATGAATTCACTCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTAAGGGTATTATTTTAATGATTACACACATGAATTCACTCTGTA  750

seq1  GTTTTTCTATAATGGCATTAATTTTGTATGCAAGCAGATTTTATTTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTATAATGGCATTAATTTTGTATGCAAGCAGATTTTATTTTTTA  800

seq1  AGCAGGCTCCACAGTGATTTAAATTAAAAGGAACAGTGC-AAAAAAAAAT  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCAGGCTCCACAGTGATTTAAATTAAAAGGAACAGTGCAAAAAAAAAAT  850

seq1  TCTGTAGCCAAAACTG-TTTCTCAAAACTCAGGTTATT--ATAGAGCTAT  896
      |||||||||||||||| |||||||||||||||||||||   |||||||||
seq2  TCTGTAGCCAAAACTGTTTTCTCAAAACTCAGGTTATTTATTAGAGCTAT  900

seq1  GAATCCCTACAGATTAAAAACACAAC-TTTCTATT-CAC-TTATTG-TAT  942
      |||||||||||||||||||||||||| |||||||| ||| |||||| |||
seq2  GAATCCCTACAGATTAAAAACACAACTTTTCTATTCCACTTTATTGTTAT  950

seq1  TATATT-CAAGG-AAAATGCAA-TATAGC-TATGTGGTAGAGACGACCAG  988
      |||||| ||||| ||||||||| |||||| | ||||||||||||||||||
seq2  TATATTCCAAGGAAAAATGCAATTATAGCTTTTGTGGTAGAGACGACCAG  1000

seq1  AAGATAAATTTTCTTAAAGACATG-AAGGTAAAAT-GGTAAAAGACATTC  1036
      ||||||| |||||||||||||||| |||||||||| ||||||  ||||||
seq2  AAGATAATTTTTCTTAAAGACATGAAAGGTAAAATGGGTAAAGAACATTC  1050

seq1  CCTGG-ATACAGGAGAGAAAGCCTAAACCTCAGGGACTTACT-AGGAGAG  1084
      ||||| ||||||   ||||||||| ||||||   |||||||| |||||||
seq2  CCTGGAATACAGAGAAGAAAGCCTTAACCTC-TAGACTTACTAAGGAGAG  1099

seq1  TTG-ACATGAGGGCTTTT  1101
      ||| ||||   |||||||
seq2  TTGAACATTGAGGCTTTT  1117


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