BAC Information

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BAC

Clone NameB6Ng01-199J16
Chromosome10 (Build37)
Map Location 106,197,173 - 106,362,631
singlet/doubletdoublet
Overlap genePpfia2
Upstream geneBC067068, Ccdc59, EG667758, EG639162, Olfr1556-ps1
Downstream gene8430416H19Rik, Lin7a, Myf5, Myf6, Ptprq, EG628870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199J16.bB6Ng01-199J16.g
ACCGA020895GA020896
length9531,159
definitionB6Ng01-199J16.b B6Ng01-199J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,197,173 - 106,198,118)(106,361,501 - 106,362,631)
sequence
gaattcagtatagttagtgtattagttatgagtaaagctgaccagcatat
gtacgtgaaatctagtttaaactatgccaagttttcacggtgcccatgat
aactctagaagacacaacagggaacagaaaagaagctcaacgtagccagt
tcaatctttataaaacacattaagagccaagctgccttcagccatgtaac
aaaccactgaatgatacgtaatgttgcataaatacttctaacacattggt
tctcaaccttcctaatgctggaaccctgtgacacagttcctcacgtttta
atgaccccaacattagaattattttcattgctaattcatagctggaattt
tgataatgttttagatcataatataaacacacgtaattcctgattttttt
ttaagttcttccattttattttttttcactgtttccatttatattttttt
tccattttttattaggtatttagctcatttacatttccaatgctatacca
aaagtcccccatatccacccacccccactcccctgcccacccactccccc
tttttggccctagtgttcccctgtactggggcatataaagttttgcaagt
ccaatgggcctctctttccagtgatggccgactaggccatcttttgatat
atatgcagctagagtcaagagctccggggtactggttagttcataatgtt
gtttccacctatagagttgcagatcccttttagctaagtgacgcctgtgt
aaagatcatttgacccccccccccaaatctgtacaaatgaaagacttgaa
gaaagtgtgtgttgcaagaggaggatagttgactagtcagcatttcttcc
ttaaataaacacaagtgcataacaattttagtatatatttattattcact
tgagaaattatttgtcagactatggtcaggatgcctaaagtgttttgttt
gtt

gaattccagtctggagaaagagatgatcctaaaaccccacttatatctta
ggtgaaattgataactgatagttttctcgaaaagtgtggcacttgagagg
ttgatcactttggatagtcaggttaccaattgtacatacgcagcattaat
tggattctgtgtttttacaacaaaccaacaaagaagtatccaaagttggg
ggacatatgttgaggatttggtggagcattagggaaggagttggcataat
taagatatagtgtttgatgttttcaataaagaaaaaaatgtaattctggt
caccaattctggtgtgtctcaatgaaataactgcttttgtctttctgcat
atacaaagttactgttcaaaggcaattattctcctttgaattagtgagcc
cacacatctaattcaccattttctttgtgttggtttctaacaaatatata
aatcattccacatacatcttaccttctaatatcaccaggacatactccct
gaaactacgcagccacatgtataataaactaagtattgactcactaaggt
aacaaggaagtatggactatgaacacacccactgtttacaccagagcagg
agaacaggtaactgagtatactgtgagagagcgacagcttgatgaatgga
ctgaaacatgctgcagaagtctccacttgggactcttcttctttgctgat
aatgtgtttttttctcattttccattatctgacatgtgatctatactgtg
caaaggaaccgagtttccatagggcagtgggcagggctaggaggtagcgt
gagtgcatgtagtttttagtttatttatttatttttttaccatgcaaata
gagaccatgaaatcaaggcaattcctagccactcgggttctgctcagagg
gtcagggcacaaggacacagtgcagaacgcatcttgaatacaaggacaca
gggctgcttgctctgttggtgttcagagtatagtcttcttgggcttagaa
agtttggatttatttttaaacacacttggtgaaaagtgagaggaccttgc
tgcctccatttttctgatcaaattgggcagtcgtcgtgtacaagacaatc
tgccattttacttgcctaacctcattttactctcgtttctcgacatggtt
cggggaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_106197173_106198118
seq2: B6Ng01-199J16.b_45_997

seq1  GAATTCAGTATAGTTAGTGTATTAGTTATGAGTAAAGCTGACCAGCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATAGTTAGTGTATTAGTTATGAGTAAAGCTGACCAGCATAT  50

seq1  GTACGTGAAATCTAGTTTAAACTATGCCAAGTTTTCACGGTGCCCATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGTGAAATCTAGTTTAAACTATGCCAAGTTTTCACGGTGCCCATGAT  100

seq1  AACTCTAGAAGACACAACAGGGAACAGAAAAGAAGCTCAACGTAGCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGAAGACACAACAGGGAACAGAAAAGAAGCTCAACGTAGCCAGT  150

seq1  TCAATCTTTATAAAACACATTAAGAGCCAAGCTGCCTTCAGCCATGTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTTTATAAAACACATTAAGAGCCAAGCTGCCTTCAGCCATGTAAC  200

seq1  AAACCACTGAATGATACGTAATGTTGCATAAATACTTCTAACACATTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACTGAATGATACGTAATGTTGCATAAATACTTCTAACACATTGGT  250

seq1  TCTCAACCTTCCTAATGCTGGAACCCTGTGACACAGTTCCTCACGTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACCTTCCTAATGCTGGAACCCTGTGACACAGTTCCTCACGTTTTA  300

seq1  ATGACCCCAACATTAGAATTATTTTCATTGCTAATTCATAGCTGGAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCCAACATTAGAATTATTTTCATTGCTAATTCATAGCTGGAATTT  350

seq1  TGATAATGTTTTAGATCATAATATAAACACACGTAATTCCTGATTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGTTTTAGATCATAATATAAACACACGTAATTCCTGATTTTTTT  400

seq1  TTAAGTTCTTCCATTTTATTTTTTTTCACTGTTTCCATTTATATTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTCTTCCATTTTATTTTTTTTCACTGTTTCCATTTATATTTTTTT  450

seq1  TCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCA  500

seq1  AAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCC  550

seq1  TTTTTGGCCCTAGTGTTCCCCTGTACTGGGGCATATAAAG-TTTGCAAGT  599
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTTTGGCCCTAGTGTTCCCCTGTACTGGGGCATATAAAGTTTTGCAAGT  600

seq1  CCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATAT  650

seq1  ATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTT  700

seq1  G-TTCCACCTATAGAGTTGCAGATCCC-TTTAGCTAAGTGACGCCTGTGT  747
      | ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTTTCCACCTATAGAGTTGCAGATCCCTTTTAGCTAAGTGACGCCTGTGT  750

seq1  AAAGATCATTTGACCCCCCCCCCCAAATCTGTACAAATGAAAGACTTGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCATTTGACCCCCCCCCCCAAATCTGTACAAATGAAAGACTTGAA  800

seq1  GAAAGTGTGTGTTGCAAGAGGAGGATAGTTGACTAGTCAGCATTTCTCCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAAGTGTGTGTTGCAAGAGGAGGATAGTTGACTAGTCAGCATTTCTTCC  850

seq1  TTAAATAAACACAAGTGCATAACAATTTTAGTATATA-TTATTATTCACT  896
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTAAATAAACACAAGTGCATAACAATTTTAGTATATATTTATTATTCACT  900

seq1  TGAG-AATTA-TTGTCAGACTAT-GTCAGGATGCTTAAGGTGTTTTGTTT  943
      |||| ||||| |||||||||||| |||||||||| ||| |||||||||||
seq2  TGAGAAATTATTTGTCAGACTATGGTCAGGATGCCTAAAGTGTTTTGTTT  950

seq1  GTT  946
      |||
seq2  GTT  953


seq1: chr10_106361501_106362631
seq2: B6Ng01-199J16.g_69_1227 (reverse)

seq1  TATTTCCCGA--CATGTC-AG-AACGA-AGTAAAATGAGG-TAGCAAAGT  44
      |||| |||||  |||||| || ||||| |||||||||||| |||  ||||
seq2  TATTCCCCGAACCATGTCGAGAAACGAGAGTAAAATGAGGTTAGGCAAGT  50

seq1  -AAATGGCAGA-TGTCTTGTTACACGACGACTG-CCAATTGGATCAG-AA  90
       |||||||||| ||||||| ||||||||||||| |||||| |||||| ||
seq2  AAAATGGCAGATTGTCTTG-TACACGACGACTGCCCAATTTGATCAGAAA  99

seq1  AATGGA-GCAGC-AGGT-CTCTCA-TTTTCA-CAAGTGTGTT--AAAATA  133
      |||||| ||||| |||| |||||| |||||| ||||||||||  ||||||
seq2  AATGGAGGCAGCAAGGTCCTCTCACTTTTCACCAAGTGTGTTTAAAAATA  149

seq1  AATCCAAAC-TTCT-AGCCCAAGAAGACTATACTCTG-ACACC-ACAGAG  179
      ||||||||| |||| |||||||||||||||||||||| ||||| ||||||
seq2  AATCCAAACTTTCTAAGCCCAAGAAGACTATACTCTGAACACCAACAGAG  199

seq1  C-AGCAGCCCTGTGTCC-TGTAT--CAGATGCCTTCTGCACTGTGTCC-T  224
      | ||||||||||||||| |||||   |||||| ||||||||||||||| |
seq2  CAAGCAGCCCTGTGTCCTTGTATTCAAGATGCGTTCTGCACTGTGTCCTT  249

seq1  GTGCCCTGACCCTCTGAGCAGAA-CCGAGTGGCTAGG-ATTGCCTTGATT  272
      ||||||||||||||||||||||| ||||||||||||| |||||||||| |
seq2  GTGCCCTGACCCTCTGAGCAGAACCCGAGTGGCTAGGAATTGCCTTGA-T  298

seq1  TTCATGGTCTCTATTTGCATGGTAAAAAAATAAATAAATAAACTAAAAAC  322
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGTCTCTATTTGCATGGTAAAAAAATAAATAAATAAACTAAAAAC  348

seq1  TACATGCACTCACGCTACCTCCTAGCCCTGCCCACTGCCCTATGG-AACT  371
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TACATGCACTCACGCTACCTCCTAGCCCTGCCCACTGCCCTATGGAAACT  398

seq1  CGGTTCCTTTGCACAGTATAGATCACATGTCAGATAATGGAAAATGAG-A  420
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CGGTTCCTTTGCACAGTATAGATCACATGTCAGATAATGGAAAATGAGAA  448

seq1  AAAAACACATTATCAGCAAAGAAGAAGAGTCCCAAGTGGAGACTTCTGCA  470
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACATTATCAGCAAAGAAGAAGAGTCCCAAGTGGAGACTTCTGCA  498

seq1  GCATGTTTCAGTCCATTCATCAAGCTGTCGCTCTCTCACAGTATACTCAG  520
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTCAGTCCATTCATCAAGCTGTCGCTCTCTCACAGTATACTCAG  548

seq1  TTACCTGTTCTCCTGCTCTGGTGTAAACAGTGGGTGTGTTCATAGTCCAT  570
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGTTCTCCTGCTCTGGTGTAAACAGTGGGTGTGTTCATAGTCCAT  598

seq1  ACTTCCTTGTTACCTTAGTGAGTCAATACTTAGTTTATTATACATGTGGC  620
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTGTTACCTTAGTGAGTCAATACTTAGTTTATTATACATGTGGC  648

seq1  TGCGTAGTTTCAGGGAGTATGTCCTGGTGATATTAGAAGGTAAGATGTAT  670
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTAGTTTCAGGGAGTATGTCCTGGTGATATTAGAAGGTAAGATGTAT  698

seq1  GTGGAATGATTTATATATTTGTTAGAAACCAACACAAAGAAAATGGTGAA  720
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATGATTTATATATTTGTTAGAAACCAACACAAAGAAAATGGTGAA  748

seq1  TTAGATGTGTGGGCTCACTAATTCAAAGGAGAATAATTGCCTTTGAACAG  770
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTGTGGGCTCACTAATTCAAAGGAGAATAATTGCCTTTGAACAG  798

seq1  TAACTTTGTATATGCAGAAAGACAAAAGCAGTTATTTCATTGAGACACAC  820
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTGTATATGCAGAAAGACAAAAGCAGTTATTTCATTGAGACACAC  848

seq1  CAGAATTGGTGACCAGAATTACATTTTTTTCTTTATTGAAAACATCAAAC  870
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGGTGACCAGAATTACATTTTTTTCTTTATTGAAAACATCAAAC  898

seq1  ACTATATCTTAATTATGCCAACTCCTTCCCTAATGCTCCACCAAATCCTC  920
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATCTTAATTATGCCAACTCCTTCCCTAATGCTCCACCAAATCCTC  948

seq1  AACATATGTCCCCCAACTTTGGATACTTCTTTGTTGGTTTGTTGTAAAAA  970
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGTCCCCCAACTTTGGATACTTCTTTGTTGGTTTGTTGTAAAAA  998

seq1  CACAGAATCCAATTAATGCTGCGTATGTACAATTGGTAACCTGACTATCC  1020
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATCCAATTAATGCTGCGTATGTACAATTGGTAACCTGACTATCC  1048

seq1  AAAGTGATCAACCTCTCAAGTGCCACACTTTTCGAGAAAACTATCAGTTA  1070
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGATCAACCTCTCAAGTGCCACACTTTTCGAGAAAACTATCAGTTA  1098

seq1  TCAATTTCACCTAAGATATAAGTGGGGTTTTAGGATCATCTCTTTCTCCA  1120
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCACCTAAGATATAAGTGGGGTTTTAGGATCATCTCTTTCTCCA  1148

seq1  GACTGGAATTC  1131
      |||||||||||
seq2  GACTGGAATTC  1159


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