BAC Information

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BAC

Clone NameB6Ng01-199J23
Chromosome10 (Build37)
Map Location 18,191,340 - 18,192,359
singlet/doubletsinglet
Overlap geneNhsl1
Upstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646
Downstream geneHebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199J23.bB6Ng01-199J23.g
ACCGA020909GA020910
length1,2091,021
definitionB6Ng01-199J23.b B6Ng01-199J23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctcgccaataattttaacataaaggggtggaaaatctag
gtgaaatggatggttttctagacagataccacacaccaaagttaaagcaa
gaacaggtgaagtatctaaacaggcctatatccgacaaagaaatagaaga
agtctgtgcccttcccccaggcttgagtaggctacatagaccttaagtgg
ctgccacagttggaccttaacgacccaggtagtcctcctccttgctgtac
ctgcgattttcaacaggaatttagaagaattgagcttgctttgcaacaga
atccagctgaaacaaaggatgggtctgtggtttctccctatataaatgca
gtgctgaatattaaactttgagccttgatcagaaattttgtcttggcttc
atccttctctcataccccattccttttcatttccagcccatctttcaggt
aacccagttctccatggctgctggatggttacagaagtcattaaaaacct
cccaaccaaaaaaaaaaaaaaaaaaaaaaaagcccagagccagatagatc
tagtgcagaattctaccagaccttcaaagaagatctgataccaatattcc
tcaaactattccataacataaaaacagaaggaacactacctaactcattc
tatgaagctacaattactctgatacctaaagagagaacttcaggctaatc
tcacttatgaatattgatgcaaaaatactcaataaaattcttgcaaacca
aatccaagaacacatcaaaaccatcattcaccacgatcaagtcggcttca
tcccagggatgcaaggttggttcaatatacaaaaatccattaacataatc
cactatataaacaaactcaaaggaaaaaaaatcacatgatcattcttttt
tagatgcagagaaatcatttgacaaaaatacaacacccccttcatattaa
atactgttttatggctaaaagttataaaaacatggatcagagcctgtcaa
taagagaggtggtggagcacaaagctagtcagagtcacctttcccaagaa
attctgtgtagtagggcttattaatttttttcttggaatcaaggccaatt
aaaacaaaacacaaaagcatttacaacagtcattgttcctcattcaggaa
tgataataactggagcttaattttatcataaactaagtgtgtaggcatta
aggtctcta
gaattcattgtctgggccacagccttgctttatttattacgttactttat
gagccaccttagtctacttgggctctacagtagtcgtcttattactgcat
tatagggtgtgtttagttaattttaagtatgttcaaacagagtcattagt
tcacttatttttcttttcatgttcttttgagattgcgtttcatcatctag
ttcccaggtctacactctgccgttctgggcaactgtctgttgcagagcag
tcagggtagacgtacttctgactcatagtcatagcatttccgggctctgc
ttgagttaggtttgccaccctggtacatgcccagttcaaaggcttgcttt
tccttaagtctagtctctcctgtgcgtaataagcatgtggcagatacata
gaaagtattgaaatgctgctgatgaatgcatttgggtgctgccagcttct
gggcagccactcataccccaggatagtcagtgttaatgggaaatacagaa
caaagagatcccaagccccagtggaatgtaagaaaattatctcagaaatt
catcttaggttcagtgtctctgtgagtttccgccccagcaaggttttgga
ctgttttgcgttgaaaattttcaagtaaattggtttgtgttaaagtcaac
tgcattaaacatttaaaaaacatttaatacggaagtatcccataagagca
taaatgagagaattgtatagcacagatggcgttcgaacagaacgtactag
gttttaaagtttttatttacacttgtaacaatggtgttttttaaagttat
ttgatagagaaatatttgattccaaccttgtggcgggggagtttgtttcg
ttcttgtacagttgggtaaatttgagtttgttgtgtgtggataaagagga
atgagaggtctctgtcaagtttgttcattgtctctaaaacaggactggaa
gaggaactatgatttgggggtgcaggaagctgaagcaaacatgctatgaa
acataatgtgtgggtggttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18191340_18192359
seq2: B6Ng01-199J23.g_67_1087

seq1  GAATTCATTGTCTGGGCCACAGCCTTGCTTTATTTATTACGTTACTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTCTGGGCCACAGCCTTGCTTTATTTATTACGTTACTTTAT  50

seq1  GAGCCACCTTAGTCTACTTGGGCTCTACAGTAGTCGTCTTATTACTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCTTAGTCTACTTGGGCTCTACAGTAGTCGTCTTATTACTGCAT  100

seq1  TATAGGGTGTGTTTAGTTAATTTTAAGTATGTTCAAACAGAGTCATTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGTGTGTTTAGTTAATTTTAAGTATGTTCAAACAGAGTCATTAGT  150

seq1  TCACTTATTTTTCTTTTCATGTTCTTTTGAGATTGCGTTTCATCATCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTATTTTTCTTTTCATGTTCTTTTGAGATTGCGTTTCATCATCTAG  200

seq1  TTCCCAGGTCTACACTCTGCCGTTCTGGGCAACTGTCTGTTGCAGAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGGTCTACACTCTGCCGTTCTGGGCAACTGTCTGTTGCAGAGCAG  250

seq1  TCAGGGTAGACGTACTTCTGACTCATAGTCATAGCATTTCCGGGCTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTAGACGTACTTCTGACTCATAGTCATAGCATTTCCGGGCTCTGC  300

seq1  TTGAGTTAGGTTTGCCACCCTGGTACATGCCCAGTTCAAAGGCTTGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTAGGTTTGCCACCCTGGTACATGCCCAGTTCAAAGGCTTGCTTT  350

seq1  TCCTTAAGTCTAGTCTCTCCTGTGCGTAATAAGCATGTGGCAGATACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAGTCTAGTCTCTCCTGTGCGTAATAAGCATGTGGCAGATACATA  400

seq1  GAAAGTATTGAAATGCTGCTGATGAATGCATTTGGGTGCTGCCAGCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATTGAAATGCTGCTGATGAATGCATTTGGGTGCTGCCAGCTTCT  450

seq1  GGGCAGCCACTCATACCCCAGGATAGTCAGTGTTAATGGGAAATACAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCCACTCATACCCCAGGATAGTCAGTGTTAATGGGAAATACAGAA  500

seq1  CAAAGAGATCCCAAGCCCCAGTGGAATGTAAGAAAATTATCTCAGAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGATCCCAAGCCCCAGTGGAATGTAAGAAAATTATCTCAGAAATT  550

seq1  CATCTTAGGTTCAGTGTCTCTGTGAGTTTCCGCCCCAGCAAGGTTTTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAGGTTCAGTGTCTCTGTGAGTTTCCGCCCCAGCAAGGTTTTGGA  600

seq1  CTGTTTTGCGTTGAAAATTTTCAAGTAAATTGGTTTGTGTTAAAGTCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGCGTTGAAAATTTTCAAGTAAATTGGTTTGTGTTAAAGTCAAC  650

seq1  TGCATTAAACATTTAAAAAACATTTAATACGGAAGTATCCCATAAGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAAACATTTAAAAAACATTTAATACGGAAGTATCCCATAAGAGCA  700

seq1  TAAATGAGAGAATTGTATAGCACAGATGGCGTTCGAACAGAACGTACTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAGAGAATTGTATAGCACAGATGGCGTTCGAACAGAACGTACTAG  750

seq1  GTTTTAAAGTTTTTATTTACACTTGTAACAATGGTGTTTTTTAAAGTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAGTTTTTATTTACACTTGTAACAATGGTGTTTTTTAAAGTTAT  800

seq1  TTGATAGAGAAATATTTGATTCCAACCTTGTGGCGGGGGAGTTTGTTTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGAGAAATATTTGATTCCAACCTTGTGGCGGGGGAGTTTGTTTCG  850

seq1  TTCTTGTACAGTT-GGTAAATTTGAGTTTGTTGTGTGTGGATAAAGAGGA  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTACAGTTGGGTAAATTTGAGTTTGTTGTGTGTGGATAAAGAGGA  900

seq1  ATGAGAGGTCTCTGTCAAGTTTGTCCATTGTTCTTCTAAAACAAGAACTG  949
      |||||||||||||||||||||||| ||||||   |||||||| || ||||
seq2  ATGAGAGGTCTCTGTCAAGTTTGTTCATTGT--CTCTAAAAC-AGGACTG  947

seq1  GAAGAGGAACTATGATTTTGGGGTGCAGGAAGCTG-AGCAAACATGCTAT  998
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  GAAGAGGAACTATGATTTGGGGGTGCAGGAAGCTGAAGCAAACATGCTAT  997

seq1  G-AACATATTGTGT-GGTGGTTGG  1020
      | |||||| ||||| |||||||||
seq2  GAAACATAATGTGTGGGTGGTTGG  1021