MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-200F18
Chromosome	10 (Build37)	9 (Build37)
Map Location	86,091,441 - 86,091,550	45,771,274 - 45,772,292
singlet/doublet	singlet	singlet
Overlap gene	none
Upstream gene	Btbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3, Timp3, EG627035, LOC672902, LOC100041419
Downstream gene	EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2, 1700113H08Rik, Ascl1, Pah
Link	Open Mouse BAC browser

Click to get alignment info.

name	Btbd11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74007 MGI:1921257
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	EG626858 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:626858 MGI:3645890
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 69 Proteins

name	LOC626878 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:626878
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC669723 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669723
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC626940 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:626940
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 67 Proteins pseudo : _no_value

name	Pwp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:103136 MGI:1914735
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prdm4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72843 MGI:1920093
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ascl4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67341 MGI:1914591
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins

name	D10Wsu52e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:28088 MGI:106379
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bpil2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270757 MGI:3026884
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fbxo7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69754 MGI:1917004
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Syn3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27204 MGI:1351334
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Timp3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21859 MGI:98754
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG627035 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:627035 MGI:3646339
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 63 Proteins

name	LOC672902 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:672902
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC100041419 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041419
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	EG382395 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382395 MGI:3646116
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 73 Proteins

name	Hsp90b1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22027 MGI:98817
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nt5dc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:103220 MGI:3513266
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Fabp3-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14074 MGI:101929
definition	gene_synonym : Fabph-3; Fabph-ps1; Fabph3 note : fatty acid binding protein 3, muscle and heart, pseudogene 1 pseudo : _no_value

name	C630002B14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:103466 MGI:2143852
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Stab2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192188 MGI:2178743
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700113H08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76640 MGI:1923890
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 1 Protein

name	Ascl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17172 MGI:96919
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pah (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18478 MGI:97473
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Btbd11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62953117 GeneID:74007 MGI:1921257
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : BTB (POZ) domain containing 11 transcript_id : NM_028709.1

name	Btbd11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62953119 GeneID:74007 MGI:1921257
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : BTB (POZ) domain containing 11 transcript_id : NM_001017525.1

name	EG626858 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260990 GeneID:626858 MGI:3645890
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 69 Proteins product : predicted gene, EG626858 transcript_id : XM_891465.2

name	Pwp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386883 GeneID:103136 MGI:1914735
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PWP1 homolog (S. cerevisiae) transcript_id : NM_133993.2

name	Prdm4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61676180 GeneID:72843 MGI:1920093
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PR domain containing 4 transcript_id : NM_181650.2

name	Ascl4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260995 GeneID:67341 MGI:1914591
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins product : achaete-scute complex homolog 4 (Drosophila) transcript_id : XM_986783.2

name	D10Wsu52e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370951 GeneID:28088 MGI:106379
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 10, Wayne State University 52, expressed transcript_id : NM_145422.2

name	Bpil2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802277 GeneID:270757 MGI:3026884
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bactericidal/permeability-increasing protein-like 2 transcript_id : NM_177772.3

name	Fbxo7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116686125 GeneID:69754 MGI:1917004
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box protein 7 transcript_id : NM_153195.2

name	Syn3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142378140 GeneID:27204 MGI:1351334
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synapsin III transcript_id : NM_013722.2

name	Timp3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119637812 GeneID:21859 MGI:98754
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tissue inhibitor of metalloproteinase 3 transcript_id : NM_011595.2

name	EG627035 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83027556 GeneID:627035 MGI:3646339
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 63 Proteins product : predicted gene, EG627035 transcript_id : XM_891676.1

name	EG382395 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388519 GeneID:382395 MGI:3646116
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 73 Proteins product : predicted gene, EG382395 transcript_id : XM_487135.3

name	Hsp90b1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755862 GeneID:22027 MGI:98817
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heat shock protein 90kDa beta (Grp94), member 1 transcript_id : NM_011631.1

name	Nt5dc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51556238 GeneID:103220 MGI:3513266
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5'-nucleotidase domain containing 3 transcript_id : NM_001003939.1

name	Nt5dc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51491846 GeneID:103220 MGI:3513266
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5'-nucleotidase domain containing 3 transcript_id : NM_001003910.1

name	Nt5dc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51491877 GeneID:103220 MGI:3513266
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5'-nucleotidase domain containing 3 transcript_id : NM_153595.2

name	C630002B14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111494222 GeneID:103466 MGI:2143852
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C630002B14 gene transcript_id : NM_175331.3

name	Stab2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801480 GeneID:192188 MGI:2178743
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : stabilin 2 transcript_id : NM_138673.2

name	1700113H08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388521 GeneID:76640 MGI:1923890
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 1 Protein product : RIKEN cDNA 1700113H08 gene transcript_id : XM_354556.5

name	Ascl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802882 GeneID:17172 MGI:96919
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : achaete-scute complex homolog-like 1 (Drosophila) transcript_id : NM_008553.4

name	Pah (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367614 GeneID:18478 MGI:97473
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phenylalanine hydroxylase transcript_id : NM_008777.2

name	Btbd11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62953118 CCDS:CCDS24091.1 GeneID:74007 MGI:1921257
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : BTB (POZ) domain containing 11 isoform 1 protein_id : NP_082985.1

name	Btbd11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62953120 GeneID:74007 MGI:1921257
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : BTB (POZ) domain containing 11 isoform 2 protein_id : NP_001017525.1

name	EG626858 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260991 GeneID:626858 MGI:3645890
definition	codon_start : 1 product : hypothetical protein protein_id : XP_896558.2

name	Pwp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19923062 CCDS:CCDS24092.1 GeneID:103136 MGI:1914735
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 exception : mismatches in translation note : nuclear phosphoprotein similar to S. cerevisiae PWP1 product : periodic tryptophan protein 1 homolog protein_id : NP_598754.1

name	Prdm4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61676181 CCDS:CCDS24093.1 GeneID:72843 MGI:1920093
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : PR domain containing 4 protein_id : NP_857633.2

name	Ascl4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260996 GeneID:67341 MGI:1914591
definition	codon_start : 1 product : achaete-scute complex homolog 4 protein_id : XP_991877.2

name	D10Wsu52e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21703842 CCDS:CCDS24094.1 GeneID:28088 MGI:106379
definition	GO_function : GO:0003674 - molecular_function [Evidence IEA] codon_start : 1 product : hypothetical protein LOC28088 protein_id : NP_663397.1

name	Bpil2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244288 GeneID:270757 MGI:3026884
definition	GO_component : GO:0005576 - extracellular region [Evidence ISS] GO_function : GO:0008289 - lipid binding [Evidence IEA]; GO:0001530 - lipopolysaccharide binding [Evidence ISS]; GO:0005543 - phospholipid binding [Evidence ISS] codon_start : 1 product : bactericidal/permeability-increasing protein-like 2 protein_id : NP_808440.1

name	Fbxo7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116686126 CCDS:CCDS24095.1 GeneID:69754 MGI:1917004
definition	codon_start : 1 product : F-box only protein 7 protein_id : NP_694875.2

name	Syn3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305535 CCDS:CCDS24096.1 GeneID:27204 MGI:1351334
definition	GO_component : GO:0045202 - synapse [Evidence IDA]; GO:0008021 - synaptic vesicle [Evidence IEA]; GO:0030672 - synaptic vesicle membrane [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007269 - neurotransmitter secretion [Evidence IEA] codon_start : 1 exception : mismatches in translation note : synapsin 3; Synapsin IIIa product : synapsin III protein_id : NP_038750.1

name	Timp3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755793 CCDS:CCDS24097.1 GeneID:21859 MGI:98754
definition	GO_component : GO:0005604 - basement membrane [Evidence IDA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0004857 - enzyme inhibitor activity [Evidence IEA]; GO:0008191 - metalloendopeptidase inhibitor activity [Evidence IEA] GO_process : GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence NAS] codon_start : 1 product : tissue inhibitor of metalloproteinase 3 protein_id : NP_035725.1

name	EG627035 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83027557 GeneID:627035 MGI:3646339
definition	codon_start : 1 product : hypothetical protein protein_id : XP_896769.1

name	EG382395 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94388520 GeneID:382395 MGI:3646116
definition	codon_start : 1 product : hypothetical protein protein_id : XP_487135.3

name	Hsp90b1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755863 GeneID:22027 MGI:98817
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0050750 - low-density lipoprotein receptor binding [Evidence ISS]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA] codon_start : 1 note : tumor rejection antigen (gp96) 1; endoplasmin; transforming growth factor alpha regulated gene 2 product : tumor rejection antigen gp96 protein_id : NP_035761.1

name	Nt5dc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51491847 CCDS:CCDS24098.1 GeneID:103220 MGI:3513266
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 3 is encoded by transcript variant 3; Grp94 neighboring nucleotidase variant 4 product : 5'-nucleotidase domain containing 3 isoform 3 protein_id : NP_001003910.1

name	Nt5dc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51491878 GeneID:103220 MGI:3513266
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2; Grp94 neighboring nucleotidase variant 4 product : 5'-nucleotidase domain containing 3 isoform 2 protein_id : NP_705823.2

name	Nt5dc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51556239 CCDS:CCDS24099.1 GeneID:103220 MGI:3513266
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1; Grp94 neighboring nucleotidase variant 4 product : 5'-nucleotidase domain containing 3 isoform 1 protein_id : NP_001003939.1

name	C630002B14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111494223 GeneID:103466 MGI:2143852
definition	codon_start : 1 note : TU12B1-TY protein homolog product : hypothetical protein LOC103466 protein_id : NP_780540.2

name	Stab2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20149764 GeneID:192188 MGI:2178743
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008368 - Gram-negative bacterial binding [Evidence ISS]; GO:0005540 - hyaluronic acid binding [Evidence ISS] [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006897 - endocytosis [Evidence ISS] [Evidence IEA] codon_start : 1 product : stabilin-2 protein_id : NP_619614.1

name	1700113H08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94388522 GeneID:76640 MGI:1923890
definition	codon_start : 1 product : hypothetical protein LOC76640 protein_id : XP_354556.4

name	Ascl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254630 CCDS:CCDS24101.1 GeneID:17172 MGI:96919
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0010001 - glial cell differentiation [Evidence IGI]; GO:0007399 - nervous system development [Evidence IEA]; GO:0007400 - neuroblast fate determination [Evidence IMP]; GO:0043350 - neuroblast proliferation (sensu Vertebrata) [Evidence IGI]; GO:0030182 - neuron differentiation [Evidence IMP] [Evidence IGI]; GO:0048663 - neuron fate commitment [Evidence IMP] [Evidence IGI]; GO:0001764 - neuron migration [Evidence IMP] [Evidence IGI]; GO:0007219 - Notch signaling pathway [Evidence IGI]; GO:0007389 - pattern specification [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA] codon_start : 1 note : mammalian achaete scute homolog 1 product : achaete-scute complex homolog-like 1 protein_id : NP_032579.2

name	Pah (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679203 CCDS:CCDS24102.1 GeneID:18478 MGI:97473
definition	GO_function : GO:0016597 - amino acid binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0004505 - phenylalanine 4-monooxygenase activity [Evidence IMP] GO_process : GO:0009072 - aromatic amino acid family metabolism [Evidence IEA]; GO:0006559 - L-phenylalanine catabolism [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : phenylalanine hydroxylase protein_id : NP_032803.1

name	Fabp3-ps1 (CDS detail)
type	TATA_signal
link	vega ensembl
xref
definition	gene_synonym : Fabph-3; Fabph-ps1; Fabph3

name	LOC626878 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626878
definition	number : 3 pseudo : _no_value

name	LOC626878 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626878
definition	number : 2 pseudo : _no_value

name	LOC626878 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626878
definition	number : 1 pseudo : _no_value

name	LOC669723 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669723
definition	number : 1 pseudo : _no_value

name	LOC669723 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669723
definition	number : 2 pseudo : _no_value

name	LOC669723 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669723
definition	number : 3 pseudo : _no_value

name	LOC669723 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669723
definition	number : 4 pseudo : _no_value

name	LOC669723 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:669723
definition	number : 5 pseudo : _no_value

name	LOC626940 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:626940
definition	number : 1 pseudo : _no_value

name	LOC672902 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672902
definition	number : 2 pseudo : _no_value

name	LOC672902 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672902
definition	number : 1 pseudo : _no_value

name	LOC100041419 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041419
definition	number : 1 pseudo : _no_value

name	LOC100041419 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041419
definition	number : 2 pseudo : _no_value

name	LOC100041419 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041419
definition	number : 3 pseudo : _no_value

name	LOC100041419 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041419
definition	number : 4 pseudo : _no_value

name	LOC100041419 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041419
definition	number : 5 pseudo : _no_value

name	LOC100041419 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041419
definition	number : 6 pseudo : _no_value

name	Fabp3-ps1 (CDS detail)
type	polyA_signal
link	vega ensembl
xref
definition	gene_synonym : Fabph-3; Fabph-ps1; Fabph3

name	Fabp3-ps1 (CDS detail)
type	misc_recomb
link	vega ensembl
xref
definition	gene_synonym : Fabph-3; Fabph-ps1; Fabph3 note : putative pseudogene (retroposon)

clone name	MSMg01-478M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429N20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-446E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455H20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-113P22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-519P11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-190I02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-386P18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-105O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-500E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160O03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-422A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-322B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352D22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-429G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312J03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-121B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141C23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182E19
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-200F18.b	B6Ng01-200F18.g
ACC	GA021444	GA021445
length	123	1,029
definition	B6Ng01-200F18.b	B6Ng01-200F18.g
singlet/doublet	singlet	singlet
BLAST hit	unique	unique
Map location.	(86,091,441 - 86,091,550)	(45,771,274 - 45,772,292)
sequence	cagtcttgccttcctcctttggtgatgaacagcagtgtggaaagtgtaag ctgaataaaccctttcctccccaacttgcttcttgatcatgttttgtgaa ggaatagaaaccctgactaagac	gaattctctgcatatcaaatccttttaatacccaacaagatgatttgttt gtgatttttggcatgtagctcaggctggcttggaatcccttgtgtagcta aagatgatctggagcgaatcatctgcttctatttcccaagtgctgagggt acagtgtttaccaccacacctagccagaaagaaagctttaaagtaggcag tttgtctgcttccaatgacattggggtggagatggggacataatcacaga tgaaacctcacatgaggtcttattcagacctctagaagccatgactgcgt cctttggcatccttcatacggggaaggctagaattgttttgcagatagtt tagtctgaatgtgtgctgtagactgtcttatcagaactgagtgagtgtca tcagtcccagtatgacacatgatgatgccagcataggatgtgaaccttgg acggagcctcattgcccatgtctcccaagcggagggactagaccaaggta ctcgtcctgatgacacagcacggcagcagtagttacagctggaagatatg gctacaaatttctgtggcatattcccttaaccactctgccatagtcctgc tgcattaaaatgcaggctacaaatgtttatagaaataataattcaggatg gttttgtttatgacacgttaatgcaaagttcttctccacccaagttccca caggccttacctttgtcagttgccctaagaggccctcttagattattttt agatgaggtctcctcctgctggaattacagactttggaccacttgcctct gcctgatcacattatgtagccatttctgaatgaaagatgtttagtgttta gctgaacaattgttttgtctttgatacagtgtaatcccacataggcctct ggcctcattttcctggctcattaaacttagttttatttattaaacacatt ttctaaaccaggttttgctatatagcccctggctgggcctcccactgaat ggacttgccttcaggcctcttaggttctg
quality values	Open. Hide. 36 10 38 49 59 59 59 59 59 59 59 62 59 62 59 62 62 59 62 62 62 49 31 59 30 22 49 50 45 45 29 23 34 43 46 59 54 59 62 59 62 62 62 49 43 59 59 62 59 59 62 59 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 44 48 56 56 62 62 62 62 62 62 62 62 62 59 59 59 59 59 59 62 62 54 62 59 59 59 62 59 62 62 62 59 59 62 56 62 62 62 62 62 62 62 62 59 59 62 59 59 49 62 62	Open. Hide. 62 47 56 47 62 62 62 62 62 56 26 17 25 20 21 21 22 22 32 45 32 32 32 49 56 59 43 62 62 62 62 62 59 62 62 59 62 62 62 59 59 62 59 59 62 62 62 62 62 62 62 62 62 62 62 59 59 56 56 54 35 46 51 59 62 59 59 51 62 62 62 59 59 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 54 54 54 59 59 59 62 59 62 59 62 62 62 54 54 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 59 59 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 46 62 59 62 62 59 62 62 62 62 62 59 62 62 62 59 62 62 59 59 59 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 54 54 62 54 49 54 54 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 59 62 59 59 62 62 59 62 62 62 62 62 62 62 62 62 59 51 62 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 54 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 44 59 62 62 59 62 59 59 59 51 59 43 38 50 56 62 56 62 56 62 56 56 56 56 62 62 56 62 47 39 62 62 62 62 62 62 62 62 62 62 62 47 62 56 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 56 43 56 56 62 62 49 42 62 62 54 62 62 62 62 47 47 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 56 62 56 56 56 47 62 56 62 62 62 62 56 62 56 62 56 62 62 62 54 62 62 49 62 62 62 62 62 54 62 62 62 52 62 52 52 42 62 54 47 62 54 62 33 52 52 54 17 15 13 12 19 18 62 54 50 52 54 52 54 58 58 58 58 54 58 54 58 58 43 54 54 58 58 58 28 18 17 9 21 20 47 54 58 58 54 58 42 58 58 40 52 47 54 50 52 52 54 42 54 42 58 48 58 54 47 52 53 46 52 52 54 58 52 58 52 46 47 54 54 58 58 52 52 47 40 40 50 46 52 58 45 42 50 58 54 52 37 34 29 42 34 58 34 26 58 35 39 47 35 51 39 52 47 46 51 41 39 58 47 58 47 45 49 46 46 50 58 53 58 53 53 53 50 58 27 48 37 25 11 40 46 50 41 46 51 49 46 52 41 40 58 50 50 58 47 46 39 51 37 50 48 50 50 39 35 19 17 32 36 14 42 13 24 38 36 37 46 19 40 24 26 26 50 47 22 17 23 16 43 39 20 52 22 58 53 50 50 40 23 28 29 38 39 10 44 30 53 52 47 49 34 46 39 35 49 31 45 32 46 33 32 40 29 38 49 35 18 50 21 19 54 8 19 40 49 33 31 33 53 51 53 29 17 18 47 37 37 30 42 13 17 37 41 32 39 40 33 10 9 25 34 25 32 10 14 12 22 14 16 11 54 31 52 32 32 51 41 32 34 24 49 30 15 41 12 29 25 26 33 31 39 31 53 18 52 42 38 15 25 32 25 41 29 17 6 13 8 10 24 8 45 31 19 28 25 38 46 51 26 28 32 21 13 21 24 18 21 33 18 31 27 34 29 40 29 28 30 18 28 14 22 31 30 32 31 22 26 22 46 31 27 30 23 19 31 42 29 15 11 21 28 19 33 18 46 36 23 30 46 13 46 21 25 29 22 8 5 20 39 46 7 25 30 48 33 7 5 8 27 41 15 31 24 27 37 12 41 44 37 39 24 36 46 46 19 10 9 26 17 14 36 44 9 37 32 21 10 20 8 11 13 27 14 30 27 7 16 31 22 6 14 13 44 20 7 9 27 8 6 4 6 9 12 22 9 6 6 7 10 30 7 9 4 6 18 22 16 14 10 5 5 6 32 13 6 4 6 33 22 10 9 6 11 8 6 5

Alignment Information

BAC End 1

BAC End 2

seq1: chr10_86091441_86091550
seq2: B6Ng01-200F18.b_67_175 (reverse)

seq1  GTCTTAGTCAGGGTTTCTATTCCTACACAAACATCATGACCAAGAATCAA  50
      |||||||||||||||||||||||| |||||  | ||||| |||||| |||
seq2  GTCTTAGTCAGGGTTTCTATTCCTTCACAA--AACATGATCAAGAAGCAA  48

seq1  GTTGGGGAGGAAAGGATTTATTCAGCTTACAC-TTCCACACTGCTGTTCA  99
      ||||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  GTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTTCCACACTGCTGTTCA  98

seq1  TCACCAAAGGA  110
      |||||||||||
seq2  TCACCAAAGGA  109

seq1: chr9_45771274_45772292
seq2: B6Ng01-200F18.g_68_1096 (reverse)

seq1  CAGAACCTAAGAGG-CTGAGGCAAAGTC--ATCAGTGTGA-GCCCAGCCA  46
      |||||||||||||| |||| |  |||||   |||||| || |||||||||
seq2  CAGAACCTAAGAGGCCTGAAGGCAAGTCCATTCAGTGGGAGGCCCAGCCA  50

seq1  -GGGCTATATAGCAAAACCTGGTTTTAGAAAATTGTGTTT-ATAAAT-AA  93
       ||||||||||||||||||||| ||||||||| ||||||| |||||| ||
seq2  GGGGCTATATAGCAAAACCTGG-TTTAGAAAA-TGTGTTTAATAAATAAA  98

seq1  ACTAAGTTTAAATGAGCCAGG-AAATGAGGCCAGAGGCCTATGTGGGATT  142
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  ACTAAGTTT-AATGAGCCAGGAAAATGAGGCCAGAGGCCTATGTGGGATT  147

seq1  ACACTGTATCAAAGACAAA--CATTGTTCAGCTAAACACTAAACATCTTT  190
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  ACACTGTATCAAAGACAAAACAATTGTTCAGCTAAACACTAAACATCTTT  197

seq1  CATTCAG-AATGGCTACATAATGTGATCAGGCAGAGGCAAGTGGTCC-AA  238
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  CATTCAGAAATGGCTACATAATGTGATCAGGCAGAGGCAAGTGGTCCAAA  247

seq1  GTCTGTAATTCCAGCAGGAGGAGACCTCATCTAAAAATAATCTAAGAGGG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTAATTCCAGCAGGAGGAGACCTCATCTAAAAATAATCTAAGAGGG  297

seq1  CCTCTTA-GGCAACTGACAAAGGTAAGGCCTGTGGGAACTTGGGTGGAGA  337
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAGGGCAACTGACAAAGGTAAGGCCTGTGGGAACTTGGGTGGAGA  347

seq1  AGAACTTTGCATTAACGTGTCATAAACAAAACCATCCTGAATTATTATTT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTGCATTAACGTGTCATAAACAAAACCATCCTGAATTATTATTT  397

seq1  CTATAAACATTTGTAGCCTGCATTTTAATGCAGCAGGACTATGGCAGAGT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAACATTTGTAGCCTGCATTTTAATGCAGCAGGACTATGGCAGAGT  447

seq1  GGTTAAGGGAATATGCCACAGAAATTTGTAGCCATATCTTCCAGCTGTAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGGGAATATGCCACAGAAATTTGTAGCCATATCTTCCAGCTGTAA  497

seq1  CTACTGCTGCCGTGCTGTGTCATCAGGACGAGTACCTTGGTCTAGTCCCT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCTGCCGTGCTGTGTCATCAGGACGAGTACCTTGGTCTAGTCCCT  547

seq1  CCGCTTGGGAGACATGGGCAATGAGGCTCCGTCCAAGGTTCACATCCTAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTTGGGAGACATGGGCAATGAGGCTCCGTCCAAGGTTCACATCCTAT  597

seq1  GCTGGCATCATCATGTGTCATACTGGGACTGATGACACTCACTCAGTTCT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCATCATCATGTGTCATACTGGGACTGATGACACTCACTCAGTTCT  647

seq1  GATAAGACAGTCTACAGCACACATTCAGACTAAACTATCTGCAAAACAAT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGACAGTCTACAGCACACATTCAGACTAAACTATCTGCAAAACAAT  697

seq1  TCTAGCCTTCCCCGTATGAAGGATGCCAAAGGACGCAGTCATGGCTTCTA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTTCCCCGTATGAAGGATGCCAAAGGACGCAGTCATGGCTTCTA  747

seq1  GAGGTCTGAATAAGACCTCATGTGAGGTTTCATCTGTGATTATGTCCCCA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTGAATAAGACCTCATGTGAGGTTTCATCTGTGATTATGTCCCCA  797

seq1  TCTCCACCCCAATGTCATTGGAAGCAGACAAACTGCCTACTTTAAAGCTT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACCCCAATGTCATTGGAAGCAGACAAACTGCCTACTTTAAAGCTT  847

seq1  TCTTTCTGGCTAGGTGTGGTGGTAAACACTGTACCCTCAGCACTTGGGAA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGGCTAGGTGTGGTGGTAAACACTGTACCCTCAGCACTTGGGAA  897

seq1  ATAGAAGCAGATGATTCGCTCCAGATCATCTTTAGCTACACAAGGGATTC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCAGATGATTCGCTCCAGATCATCTTTAGCTACACAAGGGATTC  947

seq1  CAAGCCAGCCTGAGCTACATGCCAAAAATCACAAACAAATCATCTTGTTG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAGCCTGAGCTACATGCCAAAAATCACAAACAAATCATCTTGTTG  997

seq1  GGTATTAAAAGGATTTGATATGCAGAGAATTC  1019
      ||||||||||||||||||||||||||||||||
seq2  GGTATTAAAAGGATTTGATATGCAGAGAATTC  1029

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information