BAC Information

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BAC

Clone NameB6Ng01-200J01
Chromosome10 (Build37)
Map Location 114,611,519 - 114,612,632
singlet/doubletsinglet
Overlap geneTph2
Upstream geneTrhde, 4930473D10Rik
Downstream geneTbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200J01.bB6Ng01-200J01.g
ACCGA021588GA021589
length1,1391,202
definitionB6Ng01-200J01.b B6Ng01-200J01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcagctctcccatcccaggtagcccgttctactagtgagtgag
tgaaaaaccccctctccagcatgaacctgctactgtctacgcagccaaag
acccgtatgtcaatgtggtaactatgctcacaagctttgcttctagacat
tgtagggttttaggagcctgcctaaagagccttaggttaaacgatctgaa
ttgtaatagcaagggggaaaaatactagttacagtcccttttacagtctt
gagagagattttcctctctcccctcgttagtacctcttttgttattccaa
gaagaagggcaattcttctgttatggccagcacacagccttatgaaggaa
gatttctagccttgagcttcatactctttcagctagacaagagaactggg
ctgttttctgctgagcttgagttccctttgaacaccccaccttgcagaaa
tgtttatattgctacttcggtagcctaggtcacagtggacacctcttaat
taccgctgatttttatggtcctcgaggcttgtcttctgtggtttgctgcc
tcagcttcatggtcattcttggtggtacaggtgtatacacttaaggagca
gacacagtccctgcccctccccccccccccccgacttttgacagcttgaa
gaaacaagtccagcaaggattggttgtgtttggatgaaaagacaaggcaa
gtaaggagcttggccatgaggagagacggtttagtagaccaggaagtcct
ctcacgcgtccacgtggttgataagtggcagcctccgtgtttaatttccc
aagtggataaggttagataaaataattttttaaaaattattatttatatt
tttaaataaaaatcttgcagttggctgagacacatttagactgagagtcc
ctcagtgggatgactttgccgcaggaagattcaccctagagtcgcaccgt
gtgatcataaaaatacagcaaaatctacttcagcccctgcttatcttggc
gatctgataattaacgcgggagtggaccgaagtcttggatagaatgcctt
acatttattagctatttaccccccagccgataaaattggtgggggatgaa
acatgtcaaacctgacttgtccttatagggtaacaggct
gaattctcacctgaggtaataccgaatggcagagaagcacctgaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcctccattgttggt
gggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctc
agaaaattggacatagtactaccggaggatccagcaatacctctcctggg
catatatccagaagaagccccaactggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaaactggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctagcca
aatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaa
aggaactcacacaatatgtactcactgataagtggatactagcccaaaac
ctaggatacccacgatataagatacaatttcctaaacacatgaaactcaa
gaaaaatgaagactgaagtgtggacactatgcccctccttagaagtggga
acaaaacacccatggaaggagtttacagaaacaaagtatggagctgagat
gaaaggatggaccatgtagagactgccatatccagggatccaccccataa
tcaggcttccaaatgctgacaccattgcatacactagcaagattttactg
aaaggacccagatgtagctgtctcttgtgagactatgccggggccctagc
aaaacacaagaagtggatgctcacagtcagctaaatggatggattaccag
ggtccccaatggaaggagctagagaaagtaccccaggaagctaaagggga
ttctttcaacccttatagttggaacaaccattatggaacttaatcaagta
ccccttgagctcctttgacctcctggctgtccattatgttatccaaagaa
tggcctaagccggccaatcactgaagagaagtccaattgacgctgacttg
tggtggctctgattcagtgtaaacgctcgtgagtccaaaagtagtggtag
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_114611519_114612632
seq2: B6Ng01-200J01.b_46_1184 (reverse)

seq1  AGCCTGTT--CCTTTAA-GACAGGTCAGTTTTG-CATG-TTCATCCCCC-  44
      ||||||||  ||| ||| |||| ||||| |||| |||| |||||||||| 
seq2  AGCCTGTTACCCTATAAGGACAAGTCAGGTTTGACATGTTTCATCCCCCA  50

seq1  ---ATTTTAATCGCT-GTGTGTAAATAACTAATAAATGTA--GCA-TCTA  87
         ||||||   ||| | | ||||||| ||||||||||||  ||| ||||
seq2  CCAATTTTATCGGCTGGGGGGTAAATAGCTAATAAATGTAAGGCATTCTA  100

seq1  TCAAAGAC-TCGGT-CACT-CCGCG-TAATTATCAGATCGCCAAG-TTAG  132
      || ||||| ||||| |||| ||||| ||||||||||||||||||| | ||
seq2  TCCAAGACTTCGGTCCACTCCCGCGTTAATTATCAGATCGCCAAGATAAG  150

seq1  CAGGGGCTG-AGTAGATTTTGCTGTA-TTTTATGATCACACGGTGCGACT  180
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  CAGGGGCTGAAGTAGATTTTGCTGTATTTTTATGATCACACGGTGCGACT  200

seq1  CTA-GGTGAATC-TCCTGC-GCAAGTTCATCCCACTGAGGGACTCTCAGT  227
      ||| |||||||| |||||| ||||  ||||||||||||||||||||||||
seq2  CTAGGGTGAATCTTCCTGCGGCAAAGTCATCCCACTGAGGGACTCTCAGT  250

seq1  CT-AATGTGTCTCAGCCAACTGCAAGATTTTTATTTAAAATATA-AAATA  275
      || ||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  CTAAATGTGTCTCAGCCAACTGCAAGATTTTTATTTAAAA-ATATAAATA  299

seq1  ATAATTTTTAAAAAATATTTTAATCTAACCTTATCCACTTGGGAAATTAA  325
      ||||||||||||||||  ||| ||||||||||||||||||||||||||||
seq2  ATAATTTTTAAAAAATTATTTTATCTAACCTTATCCACTTGGGAAATTAA  349

seq1  ACACGGAGGCTGCCACTTATCAACCACGTGGACGCGTGAGAGGACTTCCT  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGAGGCTGCCACTTATCAACCACGTGGACGCGTGAGAGGACTTCCT  399

seq1  GGTCTACTAAACCGTCTCTCCTCATGGCCAAGCTCCTTACTTGCCTTGTC  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACTAAACCGTCTCTCCTCATGGCCAAGCTCCTTACTTGCCTTGTC  449

seq1  TTTTCATCCAAACACAACCAATCCTTGCTGGACTTGTTTCTTCAAGCTGT  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCCAAACACAACCAATCCTTGCTGGACTTGTTTCTTCAAGCTGT  499

seq1  CAAAAGTC-GGGGGGGGGGGGGAGGGGCAGGGACTGTGTCTGCTCCTTAA  524
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTCGGGGGGGGGGGGGGAGGGGCAGGGACTGTGTCTGCTCCTTAA  549

seq1  GTGTATACACCTGTACCACCAAGAATGACCATGAAGCTGAGGCAGCAAAC  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATACACCTGTACCACCAAGAATGACCATGAAGCTGAGGCAGCAAAC  599

seq1  CACAGAAGACAAGCCTCGAGGACCATAAAAATCAGCGGTAATTAAGAGGT  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGACAAGCCTCGAGGACCATAAAAATCAGCGGTAATTAAGAGGT  649

seq1  GTCCACTGTGACCTAGGCTACCGAAGTAGCAATATAAACATTTCTGCAAG  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTGTGACCTAGGCTACCGAAGTAGCAATATAAACATTTCTGCAAG  699

seq1  GTGGGGTGTTCAAAGGGAACTCAAGCTCAGCAGAAAACAGCCCAGTTCTC  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTGTTCAAAGGGAACTCAAGCTCAGCAGAAAACAGCCCAGTTCTC  749

seq1  TTGTCTAGCTGAAAGAGTATGAAGCTCAAGGCTAGAAATCTTCCTTCATA  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAGCTGAAAGAGTATGAAGCTCAAGGCTAGAAATCTTCCTTCATA  799

seq1  AGGCTGTGTGCTGGCCATAACAGAAGAATTGCCCTTCTTCTTGGAATAAC  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGTGCTGGCCATAACAGAAGAATTGCCCTTCTTCTTGGAATAAC  849

seq1  AAAAGAGGTACTAACGAGGGGAGAGAGGAAAATCTCTCTCAAGACTGTAA  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGTACTAACGAGGGGAGAGAGGAAAATCTCTCTCAAGACTGTAA  899

seq1  AAGGGACTGTAACTAGTATTTTTCCCCCTTGCTATTACAATTCAGATCGT  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACTGTAACTAGTATTTTTCCCCCTTGCTATTACAATTCAGATCGT  949

seq1  TTAACCTAAGGCTCTTTAGGCAGGCTCCTAAAACCCTACAATGTCTAGAA  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTAAGGCTCTTTAGGCAGGCTCCTAAAACCCTACAATGTCTAGAA  999

seq1  GCAAAGCTTGTGAGCATAGTTACCACATTGACATACGGGTCTTTGGCTGC  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCTTGTGAGCATAGTTACCACATTGACATACGGGTCTTTGGCTGC  1049

seq1  GTAGACAGTAGCAGGTTCATGCTGGAGAGGGGGTTTTTCACTCACTCACT  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAGTAGCAGGTTCATGCTGGAGAGGGGGTTTTTCACTCACTCACT  1099

seq1  AGTAGAACGGGCTACCTGGGATGGGAGAGCTGAAGAATTC  1114
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAACGGGCTACCTGGGATGGGAGAGCTGAAGAATTC  1139