BAC Information

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BAC

Clone NameB6Ng01-200J03
Chromosome10 (Build37)
Map Location 107,695,590 - 107,860,542
singlet/doubletdoublet
Overlap genePpp1r12a, Pawr, EG667814
Upstream geneLin7a, Myf5, Myf6, Ptprq, EG628870
Downstream geneSyt1, EG368203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200J03.bB6Ng01-200J03.g
ACCGA021592GA021593
length919569
definitionB6Ng01-200J03.b B6Ng01-200J03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,859,641 - 107,860,542)(107,695,590 - 107,696,163)
sequence
gaattctacgaagcaaattctccaaccacttttatttaaaaagcataaga
tgtaggactaatgaacaagttaaaaaaagacttagctatgccatatgctg
gggatgattctcaaaatagatccttacctgaataattcccttcagtgtct
agaggataaccgaacacacaatgtttgattgtggggctgcccacgatcgt
gaagttgtcagacgccagctttgatgtatgtgactgagggaaggatggct
gtccttggaacagggattcagtgtgggcttcaactgagagcaggtttctc
acaggcaatcaaagaacagagcagaactcaacagcaggtcacttcacaag
actcgggactcctcaacagcaagtatctttagctggaggattcttcatca
accttaagaacgtctctgcagaataacccttcctaacatggtccctctcc
cgttctccagtcagtcattctctgtcagcttgccccaccttttctgcact
ccctcttcattttgtaagaaaagttttcttctagtaagtctgatgtgact
gttttctcagagaaccccaccaaaatatgtagtgacatactctgtgccat
gacaataccatggttattattatcagtgttcacgataggagagccatcag
gaactactttgtagttcaattaagacttttaaaccaccacaggaaaagtg
gttagacttgcaaaaataagttgagtgagatatttgagattttctttgta
cttttgtgcgagccgtgcctaaaggaagaggtgacttgctcttgaaaact
gtctcggattatgcacatgaagggacttctgagatattgttcacagccag
gaggatgcttgatacataaagaactgagtgtaatttttcagtctggatta
agcttctgggagcaagttt
tgtaatgtctttcagacagagctgagttcagtgacaaaagcggtcatggt
ggaactaccccaagtaaccctggctactagaggcaaagcttcgtctcctt
ttgaaattcctagggttttgttcaaaatgtggacaaaactatgatttcta
ctctaactgtaaatagtaataggactgtgaagagtgtccccatgtcattg
cagacattccgacatttacagtaaagactttaagtcagacatttgcacaa
gtcatttaacactgttacagcaaagcaaaacaggccaaaatggatgtcat
aagggatttggagtcaggtttgtgaaggaagatgtacttaaaaatatttt
agttatagaaaagataaaaccttcactcccagtttttgtttgtttgtttt
ttggtttggtttggttcggttgtttgaaatagcctctttctgcatagccc
tgttgaccaggctggtctcaaacacacagagaaatgcttccttctgcctt
gcaggagctgggattaagaatatgggccaccacatgtccagccctccttt
ccttttttatataataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_107859641_107860542
seq2: B6Ng01-200J03.b_50_967 (reverse)

seq1  AACTTGCTCCAAG-AGC-TAATCCAGGCTG-TAAATTACACTCAGTTCTT  47
      |||||||||| || ||| |||||||| |||  ||||||||||||||||||
seq2  AACTTGCTCCCAGAAGCTTAATCCAGACTGAAAAATTACACTCAGTTCTT  50

seq1  TATGTCTC-AGCCTCCTCCTGGCTGTG-ACCATTTCTCAGAAGTCCCTTC  95
      ||||| || ||| |||||||||||||| || || ||||||||||||||||
seq2  TATGTATCAAGCATCCTCCTGGCTGTGAACAATATCTCAGAAGTCCCTTC  100

seq1  ATGTGCAT-ATCCGGGGCAGTTTTCAAGAGC-AGTCACCTCTTCCTTTAG  143
      |||||||| ||||| | |||||||||||||| ||||||||||||||||||
seq2  ATGTGCATAATCCGAGACAGTTTTCAAGAGCAAGTCACCTCTTCCTTTAG  150

seq1  GCACGGCTCGCACAAAAGTACAA--GAAATCTC-AATATCTCACTCAACT  190
      |||||||||||||||||||||||   ||||||| ||||||||||||||||
seq2  GCACGGCTCGCACAAAAGTACAAAGAAAATCTCAAATATCTCACTCAACT  200

seq1  TATTTTTGC-AGTCTAACCACTTTTCCTGTGGTGGTTT-AAAGTCTT-AT  237
      ||||||||| |||||||||||||||||||||||||||| |||||||| ||
seq2  TATTTTTGCAAGTCTAACCACTTTTCCTGTGGTGGTTTAAAAGTCTTAAT  250

seq1  TGAACTAC-AAGTAGTTCCTGATGGCTCTCCTATCGTGAACACTGATAAT  286
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTACAAAGTAGTTCCTGATGGCTCTCCTATCGTGAACACTGATAAT  300

seq1  AATAACCATGGTATTGTCATGGCACAGAGTATGTCACTACATATTTTGGT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCATGGTATTGTCATGGCACAGAGTATGTCACTACATATTTTGGT  350

seq1  GGGGTTCTCTGAG-AAACAGTCACATCAGACTTACTAGAAGAAAACTTTT  385
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCTCTGAGAAAACAGTCACATCAGACTTACTAGAAGAAAACTTTT  400

seq1  CTTACAAAATGAAGAGGGAGT-TAGAAAAGGTGGGGCAAGCTGACAGAGA  434
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  CTTACAAAATGAAGAGGGAGTGCAGAAAAGGTGGGGCAAGCTGACAGAGA  450

seq1  ATGACTGACTGGAGAACGGGAGAGGGACCATGTTAGGAAGGGTTATTCTG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGACTGGAGAACGGGAGAGGGACCATGTTAGGAAGGGTTATTCTG  500

seq1  CAGAGACGTTCTTAAGGTTGATGAAGAATCCTCCAGCTAAAGATACTTGC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACGTTCTTAAGGTTGATGAAGAATCCTCCAGCTAAAGATACTTGC  550

seq1  TGTTGAGGAGTCCCGAGTCTTGTGAAGTGACCTGCTGTTGAGTTCTGCTC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGGAGTCCCGAGTCTTGTGAAGTGACCTGCTGTTGAGTTCTGCTC  600

seq1  TGTTCTTTGATTGCCTGTGAGAAACCTGCTCTCAGTTGAAGCCCACACTG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTGATTGCCTGTGAGAAACCTGCTCTCAGTTGAAGCCCACACTG  650

seq1  AATCCCTGTTCCAAGGACAGCCATCCTTCCCTCAGTCACATACATCAAAG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTGTTCCAAGGACAGCCATCCTTCCCTCAGTCACATACATCAAAG  700

seq1  CTGGCGTCTGACAACTTCACGATCGTGGGCAGCCCCACAATCAAACATTG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGTCTGACAACTTCACGATCGTGGGCAGCCCCACAATCAAACATTG  750

seq1  TGTGTTCGGTTATCCTCTAGACACTGAAGGGAATTATTCAGGTAAGGATC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCGGTTATCCTCTAGACACTGAAGGGAATTATTCAGGTAAGGATC  800

seq1  TATTTTGAGAATCATCCCCAGCATATGGCATAGCTAAGTCTTTTTTTAAC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAGAATCATCCCCAGCATATGGCATAGCTAAGTCTTTTTTTAAC  850

seq1  TTGTTCATTAGTCCTACATCTTATGCTTTTTAAATAAAAGTGGTTGGAGA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATTAGTCCTACATCTTATGCTTTTTAAATAAAAGTGGTTGGAGA  900

seq1  ATTTGCTTCGTAGAATTC  902
      ||||||||||||||||||
seq2  ATTTGCTTCGTAGAATTC  918

seq1: chr10_107695590_107696163
seq2: B6Ng01-200J03.g_71_645

seq1  GAATTCTGTAATGTC-TTCAGACAGAGCTGAGTTCAGTGACAAAAGCGGT  49
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAATGTCTTTCAGACAGAGCTGAGTTCAGTGACAAAAGCGGT  50

seq1  CATGGTGGAACTACCCCAAGTAACCCTGGCTACTAGAGGCAAAGCTTCGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGAACTACCCCAAGTAACCCTGGCTACTAGAGGCAAAGCTTCGT  100

seq1  CTCCTTTTGAAATTCCTAGGGTTTTGTTCAAAATGTGGACAAAACTATGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTGAAATTCCTAGGGTTTTGTTCAAAATGTGGACAAAACTATGA  150

seq1  TTTCTACTCTAACTGTAAATAGTAATAGGACTGTGAAGAGTGTCCCCATG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTCTAACTGTAAATAGTAATAGGACTGTGAAGAGTGTCCCCATG  200

seq1  TCATTGCAGACATTCCGACATTTACAGTAAAGACTTTAAGTCAGACATTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCAGACATTCCGACATTTACAGTAAAGACTTTAAGTCAGACATTT  250

seq1  GCACAAGTCATTTAACACTGTTACAGCAAAGCAAAACAGGCCAAAATGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGTCATTTAACACTGTTACAGCAAAGCAAAACAGGCCAAAATGGA  300

seq1  TGTCATAAGGGATTTGGAGTCAGGTTTGTGAAGGAAGATGTACTTAAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAAGGGATTTGGAGTCAGGTTTGTGAAGGAAGATGTACTTAAAAA  350

seq1  TATTTTAGTTATAGAAAAGATAAAACCTTCACTCCCAGTTTTTGTTTGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGTTATAGAAAAGATAAAACCTTCACTCCCAGTTTTTGTTTGTT  400

seq1  TGTTTTTTGGTTTGGTTTGGTTCGGTTGTTTGAAATAGCCTCTTTCTGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGGTTTGGTTTGGTTCGGTTGTTTGAAATAGCCTCTTTCTGCA  450

seq1  TAGCCCTGTTGACCAGGCTGGTCTCAAACACACAGAGAAATGCTTCCTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGTTGACCAGGCTGGTCTCAAACACACAGAGAAATGCTTCCTTC  500

seq1  TGCCTTGCAGGAGCTGGGATTAAGAACATGGGCCACCACATGTCCAGCCC  549
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGCCTTGCAGGAGCTGGGATTAAGAATATGGGCCACCACATGTCCAGCCC  550

seq1  TCCTTTCCTTTTTTATATAATAAAA  574
      |||||||||||||||||||||||||
seq2  TCCTTTCCTTTTTTATATAATAAAA  575