BAC Information

Click to search

BAC

Clone NameB6Ng01-200K14
Chromosome10 (Build37)
Map Location 11,034,384 - 11,035,430
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665110, 9130014G24Rik, Rab32, EG382450, Grm1, Shprh, Fbxo30
Downstream geneEpm2a, EG666732, LOC100039343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200K14.bB6Ng01-200K14.g
ACCGA021660GA021661
length1,0691,177
definitionB6Ng01-200K14.b B6Ng01-200K14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcttcactctcctatgctgttttctcctttagatattacccct
cctcaatttcaaatgtaatttctttgccagttctttccatatactctctc
tttctctgtgtatgtgtgtctttgtctctgtctctctttgtctctgtatc
tctctgtgtgtgtctctctttgtctctgtctctctctgtatctctgtgtg
tctctgtgtctgtctctctgtctctgtctctttcctacacccctctctcc
aatcttcaggggaaaatctgcttcatgaagcagcattccttgctctgttc
attcaaatcctatctctgcattaactttccccagcatgtaaatacgcgca
cctttcaccacaccaatgagaatgttgttgccctcagttcatcccatttc
ttagttcttcatgtcaagtcttgaaagagtagtttactctcctatttttg
aaaagtgattgttatttatttttgaattatcttacaaggtatggtatggg
actttgccatataggaacttcattacctttactcttaaatcgattaagta
tcacttaccagccaccttgaacaatttgattttctttacagaatgccaat
gaaagcatttaaacatgctttgacttgccaagttccaagcgatattttct
gtccttatcctgatcctattcaaactatatgactctgaaaacttttgatt
gccaagcttccctctcctctatcctctcttgctttgctgtttgcttatct
atttagactacttcccagctggatctctcaaggatgtggccccagttttt
cttattcaaggccatttcttacttgtgttcctaagttcagtgcaccaccc
agggataaacacctcaaatactgccgcagacccctctgggtttcctgtgt
ctgcgtggaaacagggtcttctcgacacgggtgggcaagcgtggaataag
cggacaaacagaccacacacaggataagttccgtgtggaattctgagttg
taatcttgttcaaatctcgaaacatcagaacttttttatgcagaagacaa
caagggtactttggggtga

gaattcttacccgaggaataccgaatggcagaggagcacctgaaaaaatg
ttcaacatccttaatcatcaggaaaacgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatgaaaaattcaggtgacagc
agatgctggtgaagatgtggaggaagaggaacgttcctccattgttggtg
ggattgcaagtttgtacaaccactctggaaatcagtctggcgattcctca
gaaaattggacataatactaccagaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccgataagaaggacacatgctccactgt
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaacaatgaatttataaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaagtaacccaatcacaaa
ggaactctcacaatatgtactcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaatttgctaaacacattaaactcaa
gagaacgaagaccaaagtgtggacactttgccccttcttagaataggaaa
caaaacacccatggaaggagttagagagacaaaatttggaagtatgacga
aaggatggaccatctagtgattgccatatccagagatccatcccatgatc
agcttccaaacgctgacaccattgcatacactagctagattttgctgaaa
ggacccagatatagctgtctcttgtgagactatgccagagcctagcaaac
acagaagttggatgatcacagtcagctattgaatggatcacaggggcccc
aatggaagggagcttagattaaacacccaaggaactaagggatctgcacc
tatagtggaacacaatatgaacctaaccagtacccagagccttcttgtcc
tctaagcttgcataattgtatcaagatgggccctaataaggccatcactg
aagagaaggccattgggacttgcaccttatatggccaagtaaggttaacg
tccagggccaaatagtgcagttggcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_11034384_11035430
seq2: B6Ng01-200K14.b_48_1116

seq1  GAATTCATCTTCACTCTCCTATGCTGTTTTCTCCTTTAGATATTACCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTCACTCTCCTATGCTGTTTTCTCCTTTAGATATTACCCCT  50

seq1  CCTCAATTTCAAATGTAATTTCTTTGCCAGTTCTTTCCATATACTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATTTCAAATGTAATTTCTTTGCCAGTTCTTTCCATATACTCTCTC  100

seq1  TTTCTCTGTGTATGTGTGTCTTTGTCTCTGTCTCTCTTTGTCTCTGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTGTATGTGTGTCTTTGTCTCTGTCTCTCTTTGTCTCTGTATC  150

seq1  TCTCTGTGTGTGTCTCTCTTTGTCTCTGTCTCTCTCTGTATCTCTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTGTGTCTCTCTTTGTCTCTGTCTCTCTCTGTATCTCTGTGTG  200

seq1  TCTCTGTGTCTGTCTCTCTGTCTCTGTCTCTTTCCTACACCCCTCTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTCTGTCTCTCTGTCTCTGTCTCTTTCCTACACCCCTCTCTCC  250

seq1  AATCTTCAGGGGAAAATCTGCTTCATGAAGCAGCATTCCTTGCTCTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCAGGGGAAAATCTGCTTCATGAAGCAGCATTCCTTGCTCTGTTC  300

seq1  ATTCAAATCCTATCTCTGCATTAACTTTCCCCAGCATGTAAATACGCGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATCCTATCTCTGCATTAACTTTCCCCAGCATGTAAATACGCGCA  350

seq1  CCTTTCACCACACCAATGAGAATGTTGTTGCCCTCAGTTCATCCCATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACCACACCAATGAGAATGTTGTTGCCCTCAGTTCATCCCATTTC  400

seq1  TTAGTTCTTCATGTCAAGTCTTGAAAGAGTAGTTTACTCTCCTATTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCTTCATGTCAAGTCTTGAAAGAGTAGTTTACTCTCCTATTTTTG  450

seq1  AAAAGTGATTGTTATTTATTTTTGAATTATCTTACAAGGTATGGTATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGATTGTTATTTATTTTTGAATTATCTTACAAGGTATGGTATGGG  500

seq1  ACTTTGCCATATAGGAACTTCATTACCTTTACTCTTAAATCGATTAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCCATATAGGAACTTCATTACCTTTACTCTTAAATCGATTAAGTA  550

seq1  TCACTTACCAGCCACCTTGAACAATTTGATTTTCTTTACAGAATGCCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTACCAGCCACCTTGAACAATTTGATTTTCTTTACAGAATGCCAAT  600

seq1  GAAAGCATTTAAACATGCTTTGACTTGCCAAGTTCCAAGCGATATTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCATTTAAACATGCTTTGACTTGCCAAGTTCCAAGCGATATTTTCT  650

seq1  GTCCTTATCCTGATCCTATTCAAACTATATGACTCTGAAAACTTTTGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTATCCTGATCCTATTCAAACTATATGACTCTGAAAACTTTTGATT  700

seq1  GCCAAGCTTCCCTCTCCTCTATCCTCTCTTGCTTTGCTGTTTGCTTATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCTTCCCTCTCCTCTATCCTCTCTTGCTTTGCTGTTTGCTTATCT  750

seq1  ATTTAGACTACTTCCCAGCTGGATCTCTCAAGGATGTGGCCCCAGTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGACTACTTCCCAGCTGGATCTCTCAAGGATGTGGCCCCAGTTTTT  800

seq1  CTTATTCAAGGCCATTTCTTACTTGTGTTCCTAAGTTCAGTGCACCACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCAAGGCCATTTCTTACTTGTGTTCCTAAGTTCAGTGCACCACCC  850

seq1  A-GGATAAACA-CTCAAATACTGCCGCAGA-CCCTCTGGG-TTCCTGTGT  896
      | ||||||||| |||||||||||||||||| ||||||||| |||||||||
seq2  AGGGATAAACACCTCAAATACTGCCGCAGACCCCTCTGGGTTTCCTGTGT  900

seq1  CTGCGTGG-AACAGGGTC-TCTCGACACGGGTGGGCAAAGCGTGG-ATAA  943
      |||||||| ||||||||| ||||||||||||||||| |||||||| ||||
seq2  CTGCGTGGAAACAGGGTCTTCTCGACACGGGTGGGC-AAGCGTGGAATAA  949

seq1  GC-GACAAACAGA-CACACACAGGA-GAGTT-CGTGTGGAA-TCTGAG-T  987
      || |||||||||| |||||||||||  |||| ||||||||| |||||| |
seq2  GCGGACAAACAGACCACACACAGGATAAGTTCCGTGTGGAATTCTGAGTT  999

seq1  GTAATCT--GTCAAATC---GAACATCAGA--CTTTTTATGCAGAAGACA  1030
      |||||||   |||||||    |||||||||   |||||||||||||||||
seq2  GTAATCTTGTTCAAATCTCGAAACATCAGAACTTTTTTATGCAGAAGACA  1049

seq1  ACAA-GGTACTT--GGGTGA  1047
      |||| |||||||  ||||||
seq2  ACAAGGGTACTTTGGGGTGA  1069


| Home | SequenceCutter | Blast | Download |