BAC Information

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BAC

Clone NameB6Ng01-201H09
Chromosome10 (Build37)
Map Location 61,596,778 - 61,743,654
singlet/doubletdoublet
Overlap geneNeurog3, Tspan15, Tacr2, Hk1
Upstream geneSgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik
Downstream gene2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201H09.bB6Ng01-201H09.g
ACCGA022224GA022225
length1,146986
definitionB6Ng01-201H09.b B6Ng01-201H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,742,506 - 61,743,654)(61,596,778 - 61,597,761)
sequence
gaattctgtataaaggcaggctacaccccagcatgctacaaatccgttag
gattggaccgtcagtcaggaagctctctaggaatgaggcacaaaaaaaag
ctcatgtgtcctgggtagatggagtggggtgcctggaaccagaccatgcg
caagagcctcagagctgcaaactcaagggctaaaaaggaagtagagacca
tctccactcctgaccatgtttaacttggaagggccactgtgctcctgggg
accattcatcgtctgtagccactgtctaagtgaccccaaccctgtaggtt
gtcgtcttgtgaggtctacacctcaagaggattaaactgtatgtgtgtgt
gccacacagtgcctatggaggtccaagagcaaccatggatgttggatgtt
ggtcctcacctccacctgctgatataataaaatagcctaacagaagcaac
ctaggggagaaagggtttattctggctgccggttccaggttacaaatagg
caagaacttgagacaactagtcacattatagagtagaaagaaatgaatgt
acagattcacttatgctcaacttgatttttcccccctcttacccagttag
gacccttgcctaggggatggtgctgcccacagtgggctgggtcttcaatt
cacataagatgctctttccacccaatgcagacagtccctcattgagactc
tcttcccagggtgattctaagttgtgtcaggttgacagttcacgttaacc
actgcactccccaaacactttctcagtcactaatacctgcaagcacttat
aggacatcttgaaatgtcactgccgcctcaagatcatttccagcatctga
agatcaggatgctactcacacaggctgccctctgttactggggaaagcct
ttgtatttgttattaagctacttgaaacaactgttgaatagaaatcagga
agcacaatctatctgaaagtatttggcttctgcccagagattttattacc
tttcttccttttgggcaaagcaattcaccaccgagccttgccagcccagc
cttttgccctgtggatggcgtaggtgagacctgcaacccagctgactgac
catattcctctttagagccaggcctcacttccgtcctatgagggga
gaattccctggcctgcaggtgcccagctccccatcctatctgctcccggg
agcactggtgttctcagacttcttgtgaagagacctgtctggctctgggt
ggtgggtgctagtggaaagggaggggaccagagccgtctggagtgggagg
tagtggaggctctcaagcatctcgcctcttctggctttcactacttggat
ccctagccctctcacagggcttaactaggcttctcatcggtacccttgct
gctgcgcacagcagacattgggggctgctcttctcttaactctcctcggt
gcagccacatcaaactctcgctccaagcatttgagaatggtagcactacc
tagttggagactcccatacttcctggtgagtctgccctcattcaaatctg
ccggcctccgaccatccatcactttttccagggtgacctaatccagtgtt
gcgtcttacctcactggctcctccatccagctcttggcccatagatgatg
ttcgtcgtctttactgcccgctacatgcagggtttctgagcttctccatt
ctgccttagtccacgaaggtgatctgccttcttctgcacttttcaagtcg
ttacccttcccccaagggagaccaggctgtgaaccggaaagccctagcct
atggctagagcatctctccaacttgtctcccgtgtctaaagtgtgagttg
cagggacggttcctgaagcactgttttgtctccctaaaaaggaaaaaaaa
agaaaaagaaatcagtttgtaaatgatataatgccttttgaaatgaattt
tgttatggtaaattatatgcctcctgccccatttttacacatttgtattt
attgatgctatttcggggtaggagaggttatattttgtacataagagtat
caacggactggtgattgagattttgagctaacaaataaagatgaacgtcg
agatcttcccaaggtgactcccattgtggcgcagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61742506_61743654
seq2: B6Ng01-201H09.b_49_1194 (reverse)

seq1  TCCCCTCATAGGGCAGGAAGGTGAGGCCTGGCCTCT-AAGA-GAATATGC  48
      |||||||||||| | |||| ||||||||||| |||| |||| ||||||| 
seq2  TCCCCTCATAGGAC-GGAA-GTGAGGCCTGG-CTCTAAAGAGGAATATGG  47

seq1  CCAGTCACGCTGGGTTTGCAGGTCTCACCTACGCCCATCCACA-GGCAAA  97
       |||||| |||||| |||||||||||||||||| ||||||||| ||||||
seq2  TCAGTCA-GCTGGG-TTGCAGGTCTCACCTACG-CCATCCACAGGGCAAA  94

seq1  AGGCTGGGCTGGGCAAGGCTCGGTGGTGAA-TGCTTTG-CCAAAAGGAAG  145
      |||||||||| ||||||||||||||||||| ||||||| |||||||||||
seq2  AGGCTGGGCT-GGCAAGGCTCGGTGGTGAATTGCTTTGCCCAAAAGGAAG  143

seq1  AAAGGT-ATAAAATCTCTGGGGCAGAAGCCAAATACCTTTCAGATAGA-T  193
      |||||| ||||||||||| |||||||||||||||| |||||||||||| |
seq2  AAAGGTAATAAAATCTCT-GGGCAGAAGCCAAATA-CTTTCAGATAGATT  191

seq1  GTGCTTCCTGATTTTCTATTTCAACAGTTGTTTCAAGTAGCTTAATAACA  243
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  GTGCTTCCTGA-TTTCTA-TTCAACAGTTGTTTCAAGTAGCTTAATAACA  239

seq1  AATACAAAGGCTTTCCCCAGT-ACAGAGGGCAGCCTGTGTGAGTAGCATC  292
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AATACAAAGGCTTTCCCCAGTAACAGAGGGCAGCCTGTGTGAGTAGCATC  289

seq1  CTGATCTTCAGATGCTGGAAATGATCTTGAGGCGGCAGTGACATTTCAAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTTCAGATGCTGGAAATGATCTTGAGGCGGCAGTGACATTTCAAG  339

seq1  ATGTCCTATAAGTGCTTGCAGGTATTAGTGACTGAGAAAGTGTTTGGGGA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTATAAGTGCTTGCAGGTATTAGTGACTGAGAAAGTGTTTGGGGA  389

seq1  GTGCAGTGGTTAACGTGAACTGTCAACCTGACACAACTTAGAATCACCCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTGGTTAACGTGAACTGTCAACCTGACACAACTTAGAATCACCCT  439

seq1  GGGAAGAGAGTCTCAATGAGGGACTGTCTGCATTGGGTGGAAAGAGCATC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGAGTCTCAATGAGGGACTGTCTGCATTGGGTGGAAAGAGCATC  489

seq1  TTATGTGAATTGAAGACCCAGCCCACTGTGGGCAGCACCATCCCCTAGGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGAATTGAAGACCCAGCCCACTGTGGGCAGCACCATCCCCTAGGC  539

seq1  AAGGGTCCTAACTGGGTAAGAGGGGGGAAAAATCAAGTTGAGCATAAGTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCCTAACTGGGTAAGAGGGGGGAAAAATCAAGTTGAGCATAAGTG  589

seq1  AATCTGTACATTCATTTCTTTCTACTCTATAATGTGACTAGTTGTCTCAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTACATTCATTTCTTTCTACTCTATAATGTGACTAGTTGTCTCAA  639

seq1  GTTCTTGCCTATTTGTAACCTGGAACCGGCAGCCAGAATAAACCCTTTCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGCCTATTTGTAACCTGGAACCGGCAGCCAGAATAAACCCTTTCT  689

seq1  CCCCTAGGTTGCTTCTGTTAGGCTATTTTATTATATCAGCAGGTGGAGGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAGGTTGCTTCTGTTAGGCTATTTTATTATATCAGCAGGTGGAGGT  739

seq1  GAGGACCAACATCCAACATCCATGGTTGCTCTTGGACCTCCATAGGCACT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCAACATCCAACATCCATGGTTGCTCTTGGACCTCCATAGGCACT  789

seq1  GTGTGGCACACACACATACAGTTTAATCCTCTTGAGGTGTAGACCTCACA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCACACACACATACAGTTTAATCCTCTTGAGGTGTAGACCTCACA  839

seq1  AGACGACAACCTACAGGGTTGGGGTCACTTAGACAGTGGCTACAGACGAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGACAACCTACAGGGTTGGGGTCACTTAGACAGTGGCTACAGACGAT  889

seq1  GAATGGTCCCCAGGAGCACAGTGGCCCTTCCAAGTTAAACATGGTCAGGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTCCCCAGGAGCACAGTGGCCCTTCCAAGTTAAACATGGTCAGGA  939

seq1  GTGGAGATGGTCTCTACTTCCTTTTTAGCCCTTGAGTTTGCAGCTCTGAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGATGGTCTCTACTTCCTTTTTAGCCCTTGAGTTTGCAGCTCTGAG  989

seq1  GCTCTTGCGCATGGTCTGGTTCCAGGCACCCCACTCCATCTACCCAGGAC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGCGCATGGTCTGGTTCCAGGCACCCCACTCCATCTACCCAGGAC  1039

seq1  ACATGAGCTTTTTTTTGTGCCTCATTCCTAGAGAGCTTCCTGACTGACGG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGCTTTTTTTTGTGCCTCATTCCTAGAGAGCTTCCTGACTGACGG  1089

seq1  TCCAATCCTAACGGATTTGTAGCATGCTGGGGTGTAGCCTGCCTTTATAC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCCTAACGGATTTGTAGCATGCTGGGGTGTAGCCTGCCTTTATAC  1139

seq1  AGAATTC  1149
      |||||||
seq2  AGAATTC  1146

seq1: chr10_61596778_61597761
seq2: B6Ng01-201H09.g_66_1051

seq1  GAATTCCCTGGCCTGCAGGTGCCCAGCTCCCCATCCTATCTGCTCCCGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGCCTGCAGGTGCCCAGCTCCCCATCCTATCTGCTCCCGGG  50

seq1  AGCACTGGTGTTCTCAGACTTCTTGTGAAGAGACCTGTCTGGCTCTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGTGTTCTCAGACTTCTTGTGAAGAGACCTGTCTGGCTCTGGGT  100

seq1  GGTGGGTGCTAGTGGAAAGGGAGGGGACCAGAGCCGTCTGGAGTGGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTGCTAGTGGAAAGGGAGGGGACCAGAGCCGTCTGGAGTGGGAGG  150

seq1  TAGTGGAGGCTCTCAAGCATCTCGCCTCTTCTGGCTTTCACTACTTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAGGCTCTCAAGCATCTCGCCTCTTCTGGCTTTCACTACTTGGAT  200

seq1  CCCTAGCCCTCTCACAGGGCTTAACTAGGCTTCTCATCGGTACCCTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCCCTCTCACAGGGCTTAACTAGGCTTCTCATCGGTACCCTTGCT  250

seq1  GCTGCGCACAGCAGACATTGGGGGCTGCTCTTCTCTTAACTCTCCTCGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGCACAGCAGACATTGGGGGCTGCTCTTCTCTTAACTCTCCTCGGT  300

seq1  GCAGCCACATCAAACTCTCGCTCCAAGCATTTGAGAATGGTAGCACTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCACATCAAACTCTCGCTCCAAGCATTTGAGAATGGTAGCACTACC  350

seq1  TAGTTGGAGACTCCCATACTTCCTGGTGAGTCTGCCCTCATTCAAATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGAGACTCCCATACTTCCTGGTGAGTCTGCCCTCATTCAAATCTG  400

seq1  CCGGCCTCCGACCATCCATCACTTTTTCCAGGGTGACCTAATCCAGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCTCCGACCATCCATCACTTTTTCCAGGGTGACCTAATCCAGTGTT  450

seq1  GCGTCTTACCTCACTGGCTCCTCCATCCAGCTCTTGGCCCATAGATGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTTACCTCACTGGCTCCTCCATCCAGCTCTTGGCCCATAGATGATG  500

seq1  TTCGTCGTCTTTACTGCCCGCTACATGCAGGGTTTCTGAGCTTCTCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTCGTCTTTACTGCCCGCTACATGCAGGGTTTCTGAGCTTCTCCATT  550

seq1  CTGCCTTAGTCCACGAAGGTGATCTGCCTTCTTCTGCACTTTTCAAGTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTAGTCCACGAAGGTGATCTGCCTTCTTCTGCACTTTTCAAGTCG  600

seq1  TTACCCTTCCCCCAAGGGAGACCAGGCTGTGAACCGGAAAGCCCTAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTTCCCCCAAGGGAGACCAGGCTGTGAACCGGAAAGCCCTAGCCT  650

seq1  ATGGCTAGAGCATCTCTCCAACTTGTCTCCCGTGTCTAAAGTGTGAGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAGAGCATCTCTCCAACTTGTCTCCCGTGTCTAAAGTGTGAGTTG  700

seq1  CAGGGACGGTTCCTGAAGCACTG-TTTGTCTCCCTAAAAAGGAAAAAAAA  749
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGGGACGGTTCCTGAAGCACTGTTTTGTCTCCCTAAAAAGGAAAAAAAA  750

seq1  AGAAAAAGAAATCAGTTTGTAAATGATATAATGCCTTTTGAAATGAATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGAAATCAGTTTGTAAATGATATAATGCCTTTTGAAATGAATTT  800

seq1  TGTTATGGTAAATTATATGCCTCCTGCCCCATTTTTACACATTTGTATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGGTAAATTATATGCCTCCTGCCCCATTTTTACACATTTGTATTT  850

seq1  ATTGATGCTATTTCGTGGTAGGAGAGTTTATATTTTGTACATAAGAGTAT  899
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  ATTGATGCTATTTCGGGGTAGGAGAGGTTATATTTTGTACATAAGAGTAT  900

seq1  CAA-GGACTGGTGATTGAGATTTTGAGCTAACAAATAAAAGATGAACGTC  948
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAACGGACTGGTGATTGAGATTTTGAGCTAACAAAT-AAAGATGAACGTC  949

seq1  GAGAATCTTCACAAGGTGACT-CCATTGT-GCGCAGAG  984
      ||| |||||| |||||||||| ||||||| ||||||||
seq2  GAG-ATCTTCCCAAGGTGACTCCCATTGTGGCGCAGAG  986