BAC Information

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BAC

Clone NameB6Ng01-201K11
Chromosome10 (Build37)
Map Location 108,214,708 - 108,357,373
singlet/doubletdoublet
Overlap geneSyt1
Upstream geneEG628870, Ppp1r12a, Pawr, EG667814, EG368203
Downstream geneNav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201K11.bB6Ng01-201K11.g
ACCGA022367GA022368
length1,1131,060
definitionB6Ng01-201K11.b B6Ng01-201K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,356,250 - 108,357,373)(108,214,708 - 108,215,776)
sequence
gaattcaaagtaatatatggagatctgacaatcttacacttgtctgataa
gtctacactagccagctttatgctagcaaagaaatttaacaaaatggcaa
tgtatctacatatgtgctggaggtttcaattgttatgaaggaaaatgaca
ggtagatataaaaaagacatgaatttttctggatgtcagccctggtaaag
ttcatttctttataaatcttttagacatccttgatttccctaggtgacta
ttttacgtagcagcatgaattccagaattttctgtcatgtaatttttttg
ctataactttataaatatatagtgcaatcttcaaagccaagactacattc
ttaagtaaataaatgtatataaaacttaaagtagaaacatctttctgatg
tttcatttacactttcccatttagtgtccttcactgtagagagatagaga
gagaagaagattagcaatcagaacaggaaagagaaggaagagaaagagga
ggaaggaggaaggtcctctagcaactaattaaaccatttggtgagctagc
tggaagggacagatcgactttctcactgcttcaacaacatcatgtttttt
ctaaataggaccctagatgaagaagccaatacagagtgaaaccattagtg
tcttgttaaaacaaggtcacggcatatgatgacgtttccaggaagactcg
tctccagccattcagctaaatatggcatctgggagatatgccctgcaatg
atggatgtctttgaaatttttcaaagaaccaatgggctagctaaaaattg
aaaagaaagaccttccatgttttccctggagaactaaataatattagttt
atgctgtaatgataaagttttattaagcctaatggtcagtggctacgtat
tggccccaaggaacatgtggaaggggcagaaagcaatataaactattaga
atccttctttatgacttcttcaacattattagctaaaacttctttagtac
acatctatctcatctgtcctctctaaagtagactgtgcctgcgtctgtgc
ccaagtgcccattgttggaagcatttagtatttccttacgttggatagtt
aactcctgctagc

gaattcctattgattagtttcagatttatcaggaattactaattggagct
tgtaatggtctgacaccaaaaaggaaaaataaaccattagacacctgctg
acaattgagttaatataaaatactttggttttatttcagttagagggtaa
aataaagtaaggttatatgtacaaaagcactgctttatgctctaatgtgt
ttctaaattataaataagcagaatgcttttgatgcaattaggaattgcta
ttgatagtagtacaaccttttaaaaggttacacaattcctagtggcctca
gcttccttgtctgtagaatggaggcgttgtgagcacctctggcctcaaat
caagttgatatcaagatgttgttaattttaagtatttgtatctcgtttct
ttcttctaggacttacttcattagactctaaggaatctcaaattcaattt
taatttgctaagtagctcttcatgtcctttctttttttttttttctgtaa
ttacccctcttatgcctgcacacacacgagtgcacactctgagttattgg
agagcatccgttggaaacaatggaatgctcaaaggactgaagaaatggag
aataagggtaatttcaaggctgtcaatctaagacacacactggacataga
aactcgagcctcagagacatatgtggaaaaataggcaagttggcaagaaa
aacttaaaatatattccatttttccatcatagtgaattaaaaacacatct
ctgtaggtaggtatagatttgaaagttgacagcactcttgtaaaatcatg
atttctttcataaatcttaatttccagtggcacaatttttattaataatg
gatgctcataattaccttatgatgtggtatcatttattaaaaataatgca
gtgaattagataaatgattacatattaaagtgaaggttcagcaaattggg
gatgatatatctacatttctgaaaaaaaagatgtattttattttatttat
ttgtttttatcgagacagctttctcttgtgtagcctgctgtctgcactca
ctgtgtagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_108356250_108357373
seq2: B6Ng01-201K11.b_44_1156 (reverse)

seq1  GCTAGCA-GAGTTAAAACTATCACAACGTAA-GAAATACTAAATGCTTCC  48
      ||||||| |||||  ||||||| |||||||| ||||||||||||||||||
seq2  GCTAGCAGGAGTT--AACTATC-CAACGTAAGGAAATACTAAATGCTTCC  47

seq1  AAACAATGGGCACTTGGGCACAGACGCAGGCACAGTCTACTTTAGAGAGG  98
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AACAATGGGCACTTGGGCACAGACGCAGGCACAGTCTACTTTAGAGAGG  96

seq1  ACAGATGAAGATAGATGTGTTACTAAAGAAAGTTTTAGCTAATTAATGGT  148
      ||||||| ||||||||||| |||||||| ||||||||||||| |||| ||
seq2  ACAGATG-AGATAGATGTG-TACTAAAG-AAGTTTTAGCTAA-TAAT-GT  141

seq1  TGAAGAAGTCATAAAAGAAAGGATTCTAATAGTTTTATATTGCTTTCTGC  198
      |||||||||||||||   |||||||||||||| |||||||||||||||||
seq2  TGAAGAAGTCATAAA--GAAGGATTCTAATAG-TTTATATTGCTTTCTGC  188

seq1  CCCTTCCACATGTTCCTTGGGGCCAATACGTAGCCACTGACCATTAGGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCACATGTTCCTTGGGGCCAATACGTAGCCACTGACCATTAGGCT  238

seq1  TAATAAAACTTTTATCATTACAGCATAAACTAATATTATTTAGTTCTCCA  298
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAC-TTTATCATTACAGCATAAACTAATATTATTTAGTTCTCCA  287

seq1  GGGAAAACATGGAAGGTCTTTCTTTTCAATTTTTAGCTAGCCCATTGGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACATGGAAGGTCTTTCTTTTCAATTTTTAGCTAGCCCATTGGTT  337

seq1  CTTTGAAAAATTTCAAAGACATCCATCATTGCAGGGCATATCTCCCAGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAAATTTCAAAGACATCCATCATTGCAGGGCATATCTCCCAGAT  387

seq1  GCCATATTTAGCTGAATGGCTGGAGACGAGTCTTCCTGGAAACGTCATCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATTTAGCTGAATGGCTGGAGACGAGTCTTCCTGGAAACGTCATCA  437

seq1  TATGCCGTGACCTTGTTTTAACAAGACACTAATGGTTTCACTCTGTATTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCGTGACCTTGTTTTAACAAGACACTAATGGTTTCACTCTGTATTG  487

seq1  GCTTCTTCATCTAGGGTCCTATTTAGAAAAAACATGATGTTGTTGAAGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTCATCTAGGGTCCTATTTAGAAAAAACATGATGTTGTTGAAGCA  537

seq1  GTGAGAAAGTCGATCTGTCCCTTCCAGCTAGCTCACCAAATGGTTTAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAAGTCGATCTGTCCCTTCCAGCTAGCTCACCAAATGGTTTAATT  587

seq1  AGTTGCTAGAGGACCTTCCTCCTTCCTCCTCTTTCTCTTCCTTCTCTTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTAGAGGACCTTCCTCCTTCCTCCTCTTTCTCTTCCTTCTCTTTC  637

seq1  CTGTTCTGATTGCTAATCTTCTTCTCTCTCTATCTCTCTACAGTGAAGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGATTGCTAATCTTCTTCTCTCTCTATCTCTCTACAGTGAAGGA  687

seq1  CACTAAATGGGAAAGTGTAAATGAAACATCAGAAAGATGTTTCTACTTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAATGGGAAAGTGTAAATGAAACATCAGAAAGATGTTTCTACTTTA  737

seq1  AGTTTTATATACATTTATTTACTTAAGAATGTAGTCTTGGCTTTGAAGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATATACATTTATTTACTTAAGAATGTAGTCTTGGCTTTGAAGAT  787

seq1  TGCACTATATATTTATAAAGTTATAGCAAAAAAATTACATGACAGAAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTATATATTTATAAAGTTATAGCAAAAAAATTACATGACAGAAAAT  837

seq1  TCTGGAATTCATGCTGCTACGTAAAATAGTCACCTAGGGAAATCAAGGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATTCATGCTGCTACGTAAAATAGTCACCTAGGGAAATCAAGGAT  887

seq1  GTCTAAAAGATTTATAAAGAAATGAACTTTACCAGGGCTGACATCCAGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAAAGATTTATAAAGAAATGAACTTTACCAGGGCTGACATCCAGAA  937

seq1  AAATTCATGTCTTTTTTATATCTACCTGTCATTTTCCTTCATAACAATTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATGTCTTTTTTATATCTACCTGTCATTTTCCTTCATAACAATTG  987

seq1  AAACCTCCAGCACATATGTAGATACATTGCCATTTTGTTAAATTTCTTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCCAGCACATATGTAGATACATTGCCATTTTGTTAAATTTCTTTG  1037

seq1  CTAGCATAAAGCTGGCTAGTGTAGACTTATCAGACAAGTGTAAGATTGTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATAAAGCTGGCTAGTGTAGACTTATCAGACAAGTGTAAGATTGTC  1087

seq1  AGATCTCCATATATTACTTTGAATTC  1124
      ||||||||||||||||||||||||||
seq2  AGATCTCCATATATTACTTTGAATTC  1113


seq1: chr10_108214708_108215776
seq2: B6Ng01-201K11.g_61_1120

seq1  GAATTCCTATTGATTAGTTTCAGATTTATCAGGAATTACTAATTGGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTGATTAGTTTCAGATTTATCAGGAATTACTAATTGGAGCT  50

seq1  TGTAATGGTCTGACACCAAAAAGGAAAAATAAACCATTAGACACCTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGGTCTGACACCAAAAAGGAAAAATAAACCATTAGACACCTGCTG  100

seq1  ACAATTGAGTTAATATAAAATACTTTGGTTTTATTTCAGTTAGAGGGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGAGTTAATATAAAATACTTTGGTTTTATTTCAGTTAGAGGGTAA  150

seq1  AATAAAGTAAGGTTATATGTACAAAAGCACTGCTTTATGCTCTAATGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGTAAGGTTATATGTACAAAAGCACTGCTTTATGCTCTAATGTGT  200

seq1  TTCTAAATTATAAATAAGCAGAATGCTTTTGATGCAATTAGGAATTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATTATAAATAAGCAGAATGCTTTTGATGCAATTAGGAATTGCTA  250

seq1  TTGATAGTAGTACAACCTTTTAAAAGGTTACACAATTCCTAGTGGCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGTAGTACAACCTTTTAAAAGGTTACACAATTCCTAGTGGCCTCA  300

seq1  GCTTCCTTGTCTGTAGAATGGAGGCGTTGTGAGCACCTCTGGCCTCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTTGTCTGTAGAATGGAGGCGTTGTGAGCACCTCTGGCCTCAAAT  350

seq1  CAAGTTGATATCAAGATGTTGTTAATTTTAAGTATTTGTATCTCGTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGATATCAAGATGTTGTTAATTTTAAGTATTTGTATCTCGTTTCT  400

seq1  TTCTTCTAGGACTTACTTCATTAGACTCTAAGGAATCTCAAATTCAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTAGGACTTACTTCATTAGACTCTAAGGAATCTCAAATTCAATTT  450

seq1  TAATTTGCTAAGTAGCTCTTCATGTCCTTTCTTTTTTTTTTTTTCTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGCTAAGTAGCTCTTCATGTCCTTTCTTTTTTTTTTTTTCTGTAA  500

seq1  TTACCCCTCTTATGCCTGCACACACACGAGTGCACACTCTGAGTTATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCTCTTATGCCTGCACACACACGAGTGCACACTCTGAGTTATTGG  550

seq1  AGAGCATCCGTTGGAAACAATGGAATGCTCAAAGGACTGAAGAAATGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATCCGTTGGAAACAATGGAATGCTCAAAGGACTGAAGAAATGGAG  600

seq1  AATAAGGGTAATTTCAAGGCTGTCAATCTAAGACACACACTGGACATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGGTAATTTCAAGGCTGTCAATCTAAGACACACACTGGACATAGA  650

seq1  AACTCGAGCCTCAGAGACATATGTGGAAAAATAGGCAAGTTGGCAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGAGCCTCAGAGACATATGTGGAAAAATAGGCAAGTTGGCAAGAAA  700

seq1  AACTTAAAATATATTCCATTTTTCCATCATAGTGAATTAAAAACACATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAATATATTCCATTTTTCCATCATAGTGAATTAAAAACACATCT  750

seq1  CTGTAGGTAGGTATAGATTTGAAAGTTGACAGCACTCTTGTAAAATCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGTAGGTATAGATTTGAAAGTTGACAGCACTCTTGTAAAATCATG  800

seq1  ATTTCTTTCATAAATCTTAATTTCCAGTGGCACAATTTTTATTAATAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTCATAAATCTTAATTTCCAGTGGCACAATTTTTATTAATAATG  850

seq1  GATGCTCATAATTACCTTATGATGTGGTATCATTTATTAAAAATAATGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCATAATTACCTTATGATGTGGTATCATTTATTAAAAATAATGCA  900

seq1  GTGAATTAGATAAATGATTACAATATTAAAGTGAAGGTTCAGGCAAAATG  950
      ||||||||||||||||||||| ||||||||||||||||||| ||||| ||
seq2  GTGAATTAGATAAATGATTAC-ATATTAAAGTGAAGGTTCA-GCAAATTG  948

seq1  GGGATGATAATATCTACATTTCTGAAAAAAAAGATGTTATTTTA-TTTAT  999
      |||||||| ||||||||||||||||||||||||||| ||||||| |||||
seq2  GGGATGAT-ATATCTACATTTCTGAAAAAAAAGATG-TATTTTATTTTAT  996

seq1  TTATTTTGTTTTTTATCGAGACAGGGTTTCTC-TGTGTAGCCCTGGCTGT  1048
      ||||||   |||||||||||||| | |||||| |||||||||   |||||
seq2  TTATTT--GTTTTTATCGAGACA-GCTTTCTCTTGTGTAGCC--TGCTGT  1041

seq1  CCTGGAACTCACTGTGTAGAC  1069
      |   | |||||||||||||||
seq2  C--TGCACTCACTGTGTAGAC  1060


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