BAC Information

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BAC

Clone NameB6Ng01-202C16
Chromosome10 (Build37)
Map Location 127,749,775 - 127,902,397
singlet/doubletdoublet
Overlap geneUsp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2
Upstream geneLOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a
Downstream geneMyl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202C16.bB6Ng01-202C16.g
ACCGA022736GA022737
length978758
definitionB6Ng01-202C16.b B6Ng01-202C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,749,775 - 127,750,740)(127,901,642 - 127,902,397)
sequence
gaattccaggccaaccagggctacatagtgagactgtctcagaacaaaac
aaaataaaaaacatcagaaaggaaaaaagaaggggaagccaaagatatta
aacagtccattggagtttctttctctcttttttttttttaaaaaacccaa
aacccctagattccctatcgactaaaggagtcagaccatgaatttgacaa
cttcagccaagtcacggagtcaccgacagggcgagaagaggagcctctcc
acacagtttctaagaaataccggaaggtgctggggacactgagtcggggt
cttgtgggacttgtgggggaagggtatcacgagggattgaatgtggtcca
taaagtcttcctccacagtctagacccaggaggccctctgtcctcatcct
gctccaactgtctgtgccttaggtaaccatcaaatattccaagctaggcc
tggaagactttgacttcaaacactacaataagactctgtttgctgggtta
gagcctcacatccccaatgcctactgtaactgcatgatccaggtaagggc
aggctctccatgcctgagcctgcacatgtctcctgctctctgtatccctc
ccctgctctccctaggtcaccttggtgcctcccctggaccttggcctcat
ctactgtgtacccttcccttgtaccactgtcttctctgtgagctccattg
ctttacttggagtcccgcttttgtatccagcgctcacagatcgctcctcc
cacccccatctttccccactcccagtttccgcaccagctctcctgctcac
cccccccgcccctgcccctgcaccaactctcctgcccctgcccgcaccag
ttttccctgctccccctgcctcaccaccagctctccttgttaacccctcc
aggtgctctattttcttggagccctgttcccttcctgatccagaacctac
cttttgtccaaaaggagtttctgcctag
gaattcaggatttcgaggctcataaccataggtgttatatcaggatgtaa
gtagtcctttatgtgacagaaagcccaagttatcacagcagaggccacaa
aaacccaagtctcaccttcttctaggttccctgggacaggatacacaaca
tgggaggcattgctcttatcctcagagatggttccctggaagcacaagga
aaagcagtaaatctacttccttttgaagtattctctagtagcctttaatc
ccagcactcaagaggcagaggcaggcaggtttctgagtttgaggccaccc
cggtctacagagtgagttccaggacagccagggctacacagagaaaccct
atctcaaaaaaaaaaaaaaaaaaaagaaaaagaaagaaagaaaataaaaa
caactaaaatgtaaccagatctgcctttcaaattacatctttcctgaagt
ggtattaaaattagtttgtattttcttgcaacaccacctaagtggcaaag
aagcacagtattaatgatgtgttagcactggagaaaagctaaagactaac
cctctgcacagatgtgtagtatactgtctgtggtcatgcacaagctacag
gtcaaccacaagtgtcccttattactctctaccagtcacctacttcagaa
atgtgacagtgaactggggggcttgtctttcagctaggctggctggctta
atgagccctcaggatctacctgcttcctctctcctggctggcacttctag
gtatgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_127749775_127750740
seq2: B6Ng01-202C16.b_43_1020

seq1  GAATTCCAGGCCAACCAGGGCTACATAGTGAGACTGTCTCAGAACAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAACCAGGGCTACATAGTGAGACTGTCTCAGAACAAAAC  50

seq1  AAAATAAAAAACATCAGAAAGGAAAAAAGAAGGGGAAGCCAAAGATATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAAACATCAGAAAGGAAAAAAGAAGGGGAAGCCAAAGATATTA  100

seq1  AACAGTCCATTGGAGTTTCTTTCTCTCTTTTTTTTTTTTAAAAAACCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCCATTGGAGTTTCTTTCTCTCTTTTTTTTTTTTAAAAAACCCAA  150

seq1  AACCCCTAGATTCCCTATCGACTAAAGGAGTCAGACCATGAATTTGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTAGATTCCCTATCGACTAAAGGAGTCAGACCATGAATTTGACAA  200

seq1  CTTCAGCCAAGTCACGGAGTCACCGACAGGGCGAGAAGAGGAGCCTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCCAAGTCACGGAGTCACCGACAGGGCGAGAAGAGGAGCCTCTCC  250

seq1  ACACAGTTTCTAAGAAATACCGGAAGGTGCTGGGGACACTGAGTCGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTTCTAAGAAATACCGGAAGGTGCTGGGGACACTGAGTCGGGGT  300

seq1  CTTGTGGGACTTGTGGGGGAAGGGTATCACGAGGGATTGAATGTGGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGGACTTGTGGGGGAAGGGTATCACGAGGGATTGAATGTGGTCCA  350

seq1  TAAAGTCTTCCTCCACAGTCTAGACCCAGGAGGCCCTCTGTCCTCATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCTTCCTCCACAGTCTAGACCCAGGAGGCCCTCTGTCCTCATCCT  400

seq1  GCTCCAACTGTCTGTGCCTTAGGTAACCATCAAATATTCCAAGCTAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAACTGTCTGTGCCTTAGGTAACCATCAAATATTCCAAGCTAGGCC  450

seq1  TGGAAGACTTTGACTTCAAACACTACAATAAGACTCTGTTTGCTGGGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGACTTTGACTTCAAACACTACAATAAGACTCTGTTTGCTGGGTTA  500

seq1  GAGCCTCACATCCCCAATGCCTACTGTAACTGCATGATCCAGGTAAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCACATCCCCAATGCCTACTGTAACTGCATGATCCAGGTAAGGGC  550

seq1  AGGCTCTCCATGCCTGAGCCTGCACATGTCTCCTGCTCTCTGTATCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTCCATGCCTGAGCCTGCACATGTCTCCTGCTCTCTGTATCCCTC  600

seq1  CCCTGCTCTCCCTAGGTCACCTTGGTGCCTCCCCTGGACCTTGGCCTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTCTCCCTAGGTCACCTTGGTGCCTCCCCTGGACCTTGGCCTCAT  650

seq1  CTACTGTGTACCC-TCCCTTGTACCACTGTCTTCTCTGTGAGCTCCATTG  699
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGTACCCTTCCCTTGTACCACTGTCTTCTCTGTGAGCTCCATTG  700

seq1  CTTTAC-TGGAGTCCCGC-TTTGTATCCAGCGCTCACAGATCGCTCCTCC  747
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTTACTTGGAGTCCCGCTTTTGTATCCAGCGCTCACAGATCGCTCCTCC  750

seq1  CACCCCCATCTTTCCCCACTCCCAGTTTCCGCACCAGCTCTCCTGCTCA-  796
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACCCCCATCTTTCCCCACTCCCAGTTTCCGCACCAGCTCTCCTGCTCAC  800

seq1  CCCCCCCGCCCCTGCCCCTGCACCAGCTCTCCTGCCCCTGCCCGCACCAG  846
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCCCCCGCCCCTGCCCCTGCACCAACTCTCCTGCCCCTGCCCGCACCAG  850

seq1  TTTT-CCTGCTCCCCCTGCCCCACCACCAGCTCTCC-TGCTAACCCCTCC  894
      |||| ||||||||||||||| ||||||||||||||| || ||||||||||
seq2  TTTTCCCTGCTCCCCCTGCCTCACCACCAGCTCTCCTTGTTAACCCCTCC  900

seq1  AGGTGCTCTA-TTTCTTGGAG-CCTGTTCGCTGTCTGATCCAGAACC-AC  941
      |||||||||| |||||||||| ||||||| ||  ||||||||||||| ||
seq2  AGGTGCTCTATTTTCTTGGAGCCCTGTTCCCTTCCTGATCCAGAACCTAC  950

seq1  CTTT--GCCAAAAGGAG-TTCTGCCTAG  966
      ||||   |||||||||| ||||||||||
seq2  CTTTTGTCCAAAAGGAGTTTCTGCCTAG  978

seq1: chr10_127901642_127902397
seq2: B6Ng01-202C16.g_67_824 (reverse)

seq1  GCTCATACCTAGAAGTGCCAGCCAGGAGGGAGG-AGCAGGTAGATCCTGA  49
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  GCTCATACCTAGAAGTGCCAGCCAGGAGAGAGGAAGCAGGTAGATCCTGA  50

seq1  GGGCTCATT-AGCCAGCCAGCCTAGCTGAAAAGACAAG-CCCCCAGTTCA  97
      ||||||||| |||||||||||||||||| ||||||||| |||||||||||
seq2  GGGCTCATTAAGCCAGCCAGCCTAGCTG-AAAGACAAGCCCCCCAGTTCA  99

seq1  CTGTCACATTTCTGAAGTAGGTGACTGGTAGAGAGTAATAAGGGACACTT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACATTTCTGAAGTAGGTGACTGGTAGAGAGTAATAAGGGACACTT  149

seq1  GTGGTTGACCTGTAGCTTGTGCATGACCACAGACAGTATACTACACATCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGACCTGTAGCTTGTGCATGACCACAGACAGTATACTACACATCT  199

seq1  GTGCAGAGGGTTAGTCTTTAGCTTTTCTCCAGTGCTAACACATCATTAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGGGTTAGTCTTTAGCTTTTCTCCAGTGCTAACACATCATTAAT  249

seq1  ACTGTGCTTCTTTGCCACTTAGGTGGTGTTGCAAGAAAATACAAACTAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCTTCTTTGCCACTTAGGTGGTGTTGCAAGAAAATACAAACTAAT  299

seq1  TTTAATACCACTTCAGGAAAGATGTAATTTGAAAGGCAGATCTGGTTACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATACCACTTCAGGAAAGATGTAATTTGAAAGGCAGATCTGGTTACA  349

seq1  TTTTAGTTGTTTTTATTTTCTTTCTTTCTTTTTCTTTTTTTTTTTTTTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTGTTTTTATTTTCTTTCTTTCTTTTTCTTTTTTTTTTTTTTTT  399

seq1  TTTTGAGATAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGATAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTC  449

seq1  TGTAGACCGGGGTGGCCTCAAACTCAGAAACCTGCCTGCCTCTGCCTCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCGGGGTGGCCTCAAACTCAGAAACCTGCCTGCCTCTGCCTCTT  499

seq1  GAGTGCTGGGATTAAAGGCTACTAGAGAATACTTCAAAAGGAAGTAGATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGGGATTAAAGGCTACTAGAGAATACTTCAAAAGGAAGTAGATT  549

seq1  TACTGCTTTTCCTTGTGCTTCCAGGGAACCATCTCTGAGGATAAGAGCAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTTTTCCTTGTGCTTCCAGGGAACCATCTCTGAGGATAAGAGCAA  599

seq1  TGCCTCCCATGTTGTGTATCCTGTCCCAGGGAACCTAGAAGAAGGTGAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCATGTTGTGTATCCTGTCCCAGGGAACCTAGAAGAAGGTGAGA  649

seq1  CTTGGGTTTTTGTGGCCTCTGCTGTGATAACTTGGGCTTTCTGTCACATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTTTTTGTGGCCTCTGCTGTGATAACTTGGGCTTTCTGTCACATA  699

seq1  AAGGACTACTTACATCCTGATATAACACCTATGGTTATGAGCCTCGAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTACTTACATCCTGATATAACACCTATGGTTATGAGCCTCGAAAT  749

seq1  CCTGAATTC  756
      |||||||||
seq2  CCTGAATTC  758