BAC Information

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BAC

Clone NameB6Ng01-202C20
Chromosome10 (Build37)
Map Location 56,216,268 - 56,217,393
singlet/doubletsinglet
Overlap geneEG668347
Upstream geneLOC100041927, D630037F22Rik, 1700060H10Rik, EG629732, Gja1
Downstream geneLOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363, Hsf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202C20.bB6Ng01-202C20.g
ACCGA022744GA022745
length1,1211,186
definitionB6Ng01-202C20.b B6Ng01-202C20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgaaaagaggcgaaggcagagtgctgtatgaaatggaaagcca
tggtaacaagcactcacagaaggactccaaagcctgaacaataccatcag
aaagaagcctgggggtatatttcaattgctagaatgcgtggctaggatgc
ctgaagcctaggattcagtccccagcatagtataaatcaggtctggtggc
acacacctgtaatcccagtattcaagagtggagggcggagaatcagagat
tcaaggccgtcttatgttccttatgaatttgaggctaaccggagctactt
gagacactaagaacaacaacaaccacatcaacacaaaagaacaacaacaa
cacaaaagaacaacaacaacaatacccccaaatcctaattacaacaacag
aggactctcggctatgtaataagcaactataagtgaatttcaaatgcctc
aaaaatgctaaaggaatgtgaggaaaatgtttccccaaaggagattgaaa
gatggttgagaaagccttacatggtgcatgtatcaggttgaagtctggac
ttagtttgcaggagatgggagaaataacttgtgagcaagtttgcttcttt
gttttggaatatcagtttgaaaactgcttataaaattaggaacaatgatc
tcgtaaattggggtttgtgatggaatgcagggagtgctgccttcctctgt
tatgtttctggcaatgcttgtctattcccatagcatcacaattctgcagc
actcatcatgggattttgttataaagaaacgtttcgggcgtgattccgtc
gtgcgcgtctgttctgtggaacaggaggcagttgttttctgtccggcttc
tcccacaccgaagtgcgcgcctccacctcatggaagactcgatggatatg
tacatgagtcctcttaggcctcagaactacctttttcggctgtgaactaa
aggctgacaaagactatcactttaaagtggatatgatgaaatgagcacca
gttgtcatttagaacggtcagtttaggagcagggccaaagatgagtacat
cgttagaggcagaagcaatgactaatgatgcagtcaattaagtaacacct
ggcaacttgaaaatgtctgta

gaattccttttcatgagctcatgagactagttaagatttgatgttctaat
gaatattcaggagtcaaaccatggttataaagttgtatctattcaaagta
gaccaatctaaaaatgatagaactataaggaagagacaaccggccacctt
cctggtgagagcacaggggtccgcctggcctgagaggtttctgcctcagg
ccccggcaggagccttggctctgggactccgcggagggcaggctgcacgg
gtgacggtgtggaatacagaggccagccatttctggaacaggcaagagcc
acagagcttctgaggcggcgccatcttcggctccagacaacctgccacct
tcctggccaaagcaacacagcttctgggaaagatcctgttttgggccttc
atcttcagccaggaggaggtccaaacaccagataactgtgcaccttccct
gaaagaggagaccttgcctgcagagactgctctgaccactgaaactcaga
ggagagagctagtctcccacgtctgctaatagagggtaacaaaatcaaca
aaggaacaatctctaaacaaagacaacaataacaactaaatccagagatt
gccagatggcgaaaggtaaacgtaagaatcctactaacagaaaccaggac
cactcaccatcatcagaacccagaatgcccacttcgcccactccagggca
ccctaacacacctgaaaaggtagacctggatttaaaagcatttctcatga
tgatggtagaggacataaagaaggaatttaataactcacttaaagaaata
caggagaacactgctaaagagttacaagtccttaaagaaaaacaggaaaa
cacaacccaaacaggtagaagtccttatagaaaaacaggaaacacatccc
aaacagatgatgggaaatgaacaaaaccatactagacctaaaaagggaag
tagacacaataaagaaaacccaaagtgaggcacgctggagatagaaacct
aggaaagaaatctgggaccatagatgccagcatcagcaacagaatacaga
gatggagagagaaattctcagtgcagagatcatggagaacatcagcacaa
caatcaagaaattggaaatgctaggatctaactcaaacattccaggaatt
ccaggaatacatggagaaacccaaaaactatccgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_56216268_56217393
seq2: B6Ng01-202C20.b_42_1162

seq1  GAATTCTTGAAAAGAGGCGAAGGCAGAGTGCTGTATGAAATGGAAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAAAGAGGCGAAGGCAGAGTGCTGTATGAAATGGAAAGCCA  50

seq1  TGGTAACAAGCACTCACAGAAGGACTCCAAAGCCTGAACAATACCATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACAAGCACTCACAGAAGGACTCCAAAGCCTGAACAATACCATCAG  100

seq1  AAAGAAGCCTGGGGGTATATTTCAATTGCTAGAATGCGTGGCTAGGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCCTGGGGGTATATTTCAATTGCTAGAATGCGTGGCTAGGATGC  150

seq1  CTGAAGCCTAGGATTCAGTCCCCAGCATAGTATAAATCAGGTCTGGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCCTAGGATTCAGTCCCCAGCATAGTATAAATCAGGTCTGGTGGC  200

seq1  ACACACCTGTAATCCCAGTATTCAAGAGTGGAGGGCGGAGAATCAGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCTGTAATCCCAGTATTCAAGAGTGGAGGGCGGAGAATCAGAGAT  250

seq1  TCAAGGCCGTCTTATGTTCCTTATGAATTTGAGGCTAACCGGAGCTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCGTCTTATGTTCCTTATGAATTTGAGGCTAACCGGAGCTACTT  300

seq1  GAGACACTAAGAACAACAACAACCACATCAACACAAAAGAACAACAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACTAAGAACAACAACAACCACATCAACACAAAAGAACAACAACAA  350

seq1  CACAAAAGAACAACAACAACAATACCCCCAAATCCTAATTACAACAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGAACAACAACAACAATACCCCCAAATCCTAATTACAACAACAG  400

seq1  AGGACTCTCGGCTATGTAATAAGCAACTATAAGTGAATTTCAAATGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTCGGCTATGTAATAAGCAACTATAAGTGAATTTCAAATGCCTC  450

seq1  AAAAATGCTAAAGGAATGTGAGGAAAATGTTTCCCCAAAGGAGATTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCTAAAGGAATGTGAGGAAAATGTTTCCCCAAAGGAGATTGAAA  500

seq1  GATGGTTGAGAAAGCCTTACATGGTGCATGTATCAGGTTGAAGTCTGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGAGAAAGCCTTACATGGTGCATGTATCAGGTTGAAGTCTGGAC  550

seq1  TTAGTTTGCAGGAGATGGGAGAAATAACTTGTGAGCAAGTTTGCTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTGCAGGAGATGGGAGAAATAACTTGTGAGCAAGTTTGCTTCTTT  600

seq1  GTTTTGGAATATCAGTTTGAAAACTGCTTATAAAATTAGGAACAATGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGAATATCAGTTTGAAAACTGCTTATAAAATTAGGAACAATGATC  650

seq1  TCGTAAATTGGGGTTTGTGATGGAATGCAGGGAGTGCTGCCTTCCTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAAATTGGGGTTTGTGATGGAATGCAGGGAGTGCTGCCTTCCTCTGT  700

seq1  TATGTTTCTGGCAATGCTTGTCTATTCCCATAGCATCACAATTCTGCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCTGGCAATGCTTGTCTATTCCCATAGCATCACAATTCTGCAGC  750

seq1  ACTCATCATGGGATTTTGTTATAAAGAAACGTTTCGGGCGTGATTCCGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCATGGGATTTTGTTATAAAGAAACGTTTCGGGCGTGATTCCGTC  800

seq1  GTGCGCGTCTGTTCTGTGGAACAGGAGGCAGTTGTTTTCTGTCCGGCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGCGTCTGTTCTGTGGAACAGGAGGCAGTTGTTTTCTGTCCGGCTTC  850

seq1  TCCCACACCGAAGTGCGCGCCTCCACCTCATGGAAGACTCGATGGATATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACACCGAAGTGCGCGCCTCCACCTCATGGAAGACTCGATGGATATG  900

seq1  TACATGAGTCCTCTTAGGCCTCAGAACTACC-TTTTCGGCTGTGAACTAA  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TACATGAGTCCTCTTAGGCCTCAGAACTACCTTTTTCGGCTGTGAACTAA  950

seq1  AGGCTGACAAAGACTATCACTTTAAAGTGGATAATGATGAAAATGAGCAC  999
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  AGGCTGACAAAGACTATCACTTTAAAGTGGAT-ATGATG-AAATGAGCAC  998

seq1  CAGTTGTCATTAAGAACGGTCAGTTTAGGAGCAGGGGCAAAAGATGAGTT  1049
      ||||||||||| ||||||||||||||||||||| |||| ||||||||| |
seq2  CAGTTGTCATTTAGAACGGTCAGTTTAGGAGCA-GGGCCAAAGATGAG-T  1046

seq1  ACATCG-TAGAGGCAGAAGCAATGAACTATGAAGGCAGTCCAATTAAAGT  1098
      |||||| ||||||||||||||||| ||||   | ||||| ||||| ||||
seq2  ACATCGTTAGAGGCAGAAGCAATG-ACTAATGATGCAGT-CAATT-AAGT  1093

seq1  AACA-CTGGCAACTTTGAAAATGTCTGTA  1126
      |||| |||||||| |||||||||||||||
seq2  AACACCTGGCAAC-TTGAAAATGTCTGTA  1121


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