BAC Information

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BAC

Clone NameB6Ng01-203C20
Chromosome10 (Build37)
Map Location 114,108,830 - 114,109,890
singlet/doubletsinglet
Overlap geneTrhde
Upstream geneLOC100042666
Downstream gene4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203C20.bB6Ng01-203C20.g
ACCGA023465GA023466
length1,2071,062
definitionB6Ng01-203C20.b B6Ng01-203C20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattatcccc
tatctgatttaggataagtaaagatcctttcccaatctgttggtggtcct
tttgtcctattgacggtgtcttttgccttgcagaaactttggagtttcat
gaggtcccatttgtcaattcttgatcttacagtacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgattcgca
ttcttctacatgataacaaccagttgtgccagcactaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgttgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctgttccattggt
ctacttgtctgtctctataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtcaggtatggtgattccaccagaggttctttt
atccttgagaaaagttcttgctatcctcggttttttgttattccagatga
atttgcaaatttctccttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttctttcttcagagacttgaagttttatcatata
gatctttcacttcccttagttagagtcacgctgagatattttatattatt
tgtgactattgagaagggtgtgtttccctaatttcttttcttcagcctgt
ttattcttgtgtagaagaaaggccattgactggtttgagtaattttataa
tccagctacttcatcggagctgttatcaagaattaggaagtactctggtg
gattttaggtcacttaatatactatcatatcatcctgccaaaggggaatt
tgacttccttctttgcaagtgtgtaatccactgtcgatatctcactactg
atcgctc
gaattctctagctatactttgaagtctccagcctctaacacttggctaat
tcctaattatacttgttacccaagttgtcacttatgctgaatgtatctcc
ctacctgcctgtcaaactcatctcttctatccaaaacttctttaatgtgt
gttccccaagtactttgagcactggaatgaaatcgaaaacaagtaaataa
ccacttggattattccaaaagatttcagggagactggcttaaaaaccgca
cataaagtcctttgtgatggtttgtgaagggtgaacgcttggttggtgga
aaggaaaacacagcgttttatgaggatcagattcatgagcaagctggcag
cctcacaggcacggagtacacaattctgggatgtgagtgttaaataggtg
gtcagtggctgttttcagttcatgcctctattccctttgcacccaccttt
tctttgtaggacttgtcaactgaaacagctctttctctgagtcactaatt
cccttcaatgtcaaataaccctttgtcagtggtctaagtaatcctgcctc
cccagcttcaccaaaaagcagcagctgaaacagccgcttaagtaacttgg
ctgttttactagaaagcgctcagggatgcagggccctggggcttttatat
aaaataatgtgttattacttcaaatactgtgtttacagagctcgtgctgc
taaggattaagggaatgcaccatgacaaatctgattccgggcaggattgc
cttttctaaaatagatcaagtagaacttctgacttaagagaattagggtc
tctgcgtatgttgtatagcactctgtgtggtatcagcaggtttttgtttc
ccttgagatgtcttgtggcagtctggcaaggtctagtgtgaaatctcagg
gcttgacgtatcactgcattcaaacacaagtcagcaatatatttggggtt
gtcctcatgttaaagttcatggcttttagaaaataggggtttgggggaag
atgttgccatcttactaagggatccagtgaaggtggtacccacacgttcc
ttgggtgaggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_114108830_114109890
seq2: B6Ng01-203C20.g_66_1127 (reverse)

seq1  ATCCTCACC--AAGAACGTGTGGGTA-CACCTTCACTGAATCCC-TAGTA  46
      |||||||||  | ||||||||||||| ||||||||||| ||||| |||||
seq2  ATCCTCACCCAAGGAACGTGTGGGTACCACCTTCACTGGATCCCTTAGTA  50

seq1  AGATGGCAAACATCTTCCCCC-AACCCCTATTTTTCTAAAAGCCATGAAC  95
      ||||||| ||||||||||||| |||||||| |||||||||||||||||| 
seq2  AGATGGC-AACATCTTCCCCCAAACCCCTA-TTTTCTAAAAGCCATGAA-  97

seq1  CTTTAACATGAGGACAACCCCAAATATATTGCCTGACTTGTGTTTGAATG  145
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTTAACATGAGGACAACCCCAAATATATTG-CTGACTTGTGTTTGAATG  146

seq1  CAGTGATACGTCAAGCCCTGAGATTTCACACTAGACCTTGCCAGACTGCC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATACGTCAAGCCCTGAGATTTCACACTAGACCTTGCCAGACTGCC  196

seq1  ACAAGACATCTCAAGGGAAACAAAAACCTGCTGATACCACACAGAGTGCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACATCTCAAGGGAAACAAAAACCTGCTGATACCACACAGAGTGCT  246

seq1  ATACAACATACGCAGAGACCCTAATTCTCTTAAGTCAGAAGTTCTACTTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACATACGCAGAGACCCTAATTCTCTTAAGTCAGAAGTTCTACTTG  296

seq1  ATCTATTTTAGAAAAGGCAATCCTGCCCGGAATCAGATTTGTCATGGTGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTTAGAAAAGGCAATCCTGCCCGGAATCAGATTTGTCATGGTGC  346

seq1  ATTCCCTTAATCCTTAGCAGCACGAGCTCTGTAAACACAGTATTTGAAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTTAATCCTTAGCAGCACGAGCTCTGTAAACACAGTATTTGAAGT  396

seq1  AATAACACATTATTTTATATAAAAGCCCCAGGGCCCTGCATCCCTGAGCG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACACATTATTTTATATAAAAGCCCCAGGGCCCTGCATCCCTGAGCG  446

seq1  CTTTCTAGTAAAACAGCCAAGTTACTTAAGCGGCTGTTTCAGCTGCTGCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGTAAAACAGCCAAGTTACTTAAGCGGCTGTTTCAGCTGCTGCT  496

seq1  TTTTGGTGAAGCTGGGGAGGCAGGATTACTTAGACCACTGACAAAGGGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTGAAGCTGGGGAGGCAGGATTACTTAGACCACTGACAAAGGGTT  546

seq1  ATTTGACATTGAAGGGAATTAGTGACTCAGAGAAAGAGCTGTTTCAGTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACATTGAAGGGAATTAGTGACTCAGAGAAAGAGCTGTTTCAGTTG  596

seq1  ACAAGTCCTACAAAGAAAAGGTGGGTGCAAAGGGAATAGAGGCATGAACT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCCTACAAAGAAAAGGTGGGTGCAAAGGGAATAGAGGCATGAACT  646

seq1  GAAAACAGCCACTGACCACCTATTTAACACTCACATCCCAGAATTGTGTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGCCACTGACCACCTATTTAACACTCACATCCCAGAATTGTGTA  696

seq1  CTCCGTGCCTGTGAGGCTGCCAGCTTGCTCATGAATCTGATCCTCATAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTGCCTGTGAGGCTGCCAGCTTGCTCATGAATCTGATCCTCATAAA  746

seq1  ACGCTGTGTTTTCCTTTCCACCAACCAAGCGTTCACCCTTCACAAACCAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGTGTTTTCCTTTCCACCAACCAAGCGTTCACCCTTCACAAACCAT  796

seq1  CACAAAGGACTTTATGTGCGGTTTTTAAGCCAGTCTCCCTGAAATCTTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGACTTTATGTGCGGTTTTTAAGCCAGTCTCCCTGAAATCTTTT  846

seq1  GGAATAATCCAAGTGGTTATTTACTTGTTTTCGATTTCATTCCAGTGCTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAATCCAAGTGGTTATTTACTTGTTTTCGATTTCATTCCAGTGCTC  896

seq1  AAAGTACTTGGGGAACACACATTAAAGAAGTTTTGGATAGAAGAGATGAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTTGGGGAACACACATTAAAGAAGTTTTGGATAGAAGAGATGAG  946

seq1  TTTGACAGGCAGGTAGGGAGATACATTCAGCATAAGTGACAACTTGGGTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGGCAGGTAGGGAGATACATTCAGCATAAGTGACAACTTGGGTA  996

seq1  ACAAGTATAATTAGGAATTAGCCAAGTGTTAGAGGCTGGAGACTTCAAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTATAATTAGGAATTAGCCAAGTGTTAGAGGCTGGAGACTTCAAAG  1046

seq1  TATAGCTAGAGAATTC  1061
      ||||||||||||||||
seq2  TATAGCTAGAGAATTC  1062