BAC Information

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BAC

Clone NameB6Ng01-203C22
Chromosome4 (Build37)10 (Build37)
Map Location 146,091,131 - 146,092,268129,315,744 - 129,316,707
singlet/doubletsingletsinglet
Overlap geneMGC117846
Upstream geneLOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445
Downstream geneOTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203C22.bB6Ng01-203C22.g
ACCGA023469GA023470
length1,133769
definitionB6Ng01-203C22.b B6Ng01-203C22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,091,131 - 146,092,268)(129,315,744 - 129,316,707)
sequence
gaattctctgatgaatactaagattggattgtttggtaaagcatttgtca
cattcactgcatttgtaaggtttctctcctgtatgaattctctgatgcat
agtaagattgaatttgtttttaaaacatttgtcacattcactacatttgt
aaattttctcttctgtatgaatttcctgatgaatactaagatggatctga
tgggtaaagcatttgtcacttttactacttttgtaaggtttctttccatg
ataaattctctgctgactttgtaggttttctctctgggtaagatatttgt
gaaattcactacatttgtaagggttccctgcaatattgtcttttttcacc
atgactttatgtttagaaacaaaaatcttgtctaattctgcatttcggtt
gtgttttttcttctgcatgttaattccttgattgagactaatggtagaaa
acaaacttaaactgtttacagagtcattgtatttgcaaacttctttagtg
ttcctgggcttaagtcttttttggttcgagaattgaagagcatcagagct
gtgattagttttgtaaggtgtacactggagggattcaagaatgacattgc
taagcttgtcccatttagaagacttctcttgaatattcatgtgttcatgg
acaatgtactggctgtcttgatccaataccttcccattctttccacgtat
gcaatgattttctgaaaaaaaagggggggcaattagaggtgacatgaatt
acttatataaggagtaagggactcaataatcagtgagcttatggattcgt
actctcaagaaaggtctctctctctctctctctctctctctctctctctc
tctgtgaatcattacatgtatcctcagaagaacctcaatatgatctatat
caaatgactggaaatgataataccctgctaatgttattttcaattagaca
tcataccacctcaaatatataacccagaattgctccaaagagtgacatga
tatgtaccccactgatagtggattattagcccagaaccttaggaataccc
aggattatcataccatttgtgaaccacatgaccactctcaggagatgaga
ccaagtattggaccactttgcccctcttagaat
gaattcatacaggagagaaaccttacaaatagtttgtacgtgacaaatac
aataatcacaatgtcagtctgagaaatgatcagttatttcatacagtaga
gaatctttataaatgaagtgaatgagacaatcctttaccaagatacatca
tcttaaaattcattagagaatagttacagaagagaaacttttcaaatgta
tcaaaggtatgaattcttattttttgcctgtttcttagaatgtaacagtg
aatacttataggctagaaacaacgcatgtattgtatgaagaaatatcttt
gacttcatttttggtcagagaaaacatctaagacctttttaagggaacat
atttctgttgagaaaaaggtggcatttgttttattcatggcatattcttg
gcaatactcaaggctccacactagagaattagtatgattatgaaaatctt
gtgaaaattttcatgcaatgttcaaatcttaaataatgtcaactatgttg
ggagaaactctgacaatatgaaaatgtagcaagcatttctttctttcttt
ctttctttctttttttttttttttttggttgggttttagagacagggttt
ctcagtatatccatggccgtcctggaactcactctgtagaccaggctggg
cttcgactcaaaaatccgcctgcctctgcctcggagtgctgggattaaga
catgtgccaccatgcccagatgtagaaagcttttcatgacacctttttta
tttgttcaccctgaaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146091131_146092268
seq2: B6Ng01-203C22.b_49_1181 (reverse)

seq1  ATTCTAAGAAGGGGCAAAGT-GTCC-ATACTTTGGTCTTCATTCTTCT-T  47
      |||||||| ||||||||||| |||| |||| |||||| ||| ||| ||  
seq2  ATTCTAAG-AGGGGCAAAGTGGTCCAATAC-TTGGTC-TCA-TCTCCTGA  46

seq1  GAGT-GTCATGTGTTTCACAAATTGTATGATATATCTTGGGTATT-CTAA  95
      |||| |||||||| ||||||||| |||||||| ||| |||||||| ||||
seq2  GAGTGGTCATGTGGTTCACAAATGGTATGATA-ATCCTGGGTATTCCTAA  95

seq1  GTTTCTGGGCTAAT-ATCCACTTATCAGT-GAGTACATATCATGTCACTT  143
      | |||||||||||| |||||| ||||||| | ||||||||||||||||| 
seq2  GGTTCTGGGCTAATAATCCAC-TATCAGTGGGGTACATATCATGTCACT-  143

seq1  CTTTTGGAGCAATTCTGGGTTATTATATTTGAGGTGGTATGATGTCTAAT  193
        |||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  -CTTTGGAGCAATTCTGGGTTA-TATATTTGAGGTGGTATGATGTCTAA-  190

seq1  TTGAAAATAACATTTAGCAGGGTATTATCATTTCCAGTCATTTGATATAG  243
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATAACA-TTAGCAGGGTATTATCATTTCCAGTCATTTGATATAG  239

seq1  ATCATATTTGAGGTTCTTCTGAGGATACATGTAATGATTCACAGAGAGAG  293
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATA-TTGAGGTTCTTCTGAGGATACATGTAATGATTCACAGAGAGAG  288

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTTTCTTGAGAGTACGAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTTTCTTGAGAGTACGAA  338

seq1  TCCATAAGCTCACTGATTATTGAGTCCCTTACTCCTTATATAAGTAATTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAGCTCACTGATTATTGAGTCCCTTACTCCTTATATAAGTAATTC  388

seq1  ATGTCACCTCTAATTGCCCCCCCTTTTTTTTCAGAAAATCATTGCATACG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACCTCTAATTGCCCCCCCTTTTTTTTCAGAAAATCATTGCATACG  438

seq1  TGGAAAGAATGGGAAGGTATTGGATCAAGACAGCCAGTACATTGTCCATG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAATGGGAAGGTATTGGATCAAGACAGCCAGTACATTGTCCATG  488

seq1  AACACATGAATATTCAAGAGAAGTCTTCTAAATGGGACAAGCTTAGCAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGAATATTCAAGAGAAGTCTTCTAAATGGGACAAGCTTAGCAAT  538

seq1  GTCATTCTTGAATCCCTCCAGTGTACACCTTACAAAACTAATCACAGCTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCTTGAATCCCTCCAGTGTACACCTTACAAAACTAATCACAGCTC  588

seq1  TGATGCTCTTCAATTCTCGAACCAAAAAAGACTTAAGCCCAGGAACACTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTCTTCAATTCTCGAACCAAAAAAGACTTAAGCCCAGGAACACTA  638

seq1  AAGAAGTTTGCAAATACAATGACTCTGTAAACAGTTTAAGTTTGTTTTCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTTGCAAATACAATGACTCTGTAAACAGTTTAAGTTTGTTTTCT  688

seq1  ACCATTAGTCTCAATCAAGGAATTAACATGCAGAAGAAAAAACACAACCG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAGTCTCAATCAAGGAATTAACATGCAGAAGAAAAAACACAACCG  738

seq1  AAATGCAGAATTAGACAAGATTTTTGTTTCTAAACATAAAGTCATGGTGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGAATTAGACAAGATTTTTGTTTCTAAACATAAAGTCATGGTGA  788

seq1  AAAAAGACAATATTGCAGGGAACCCTTACAAATGTAGTGAATTTCACAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACAATATTGCAGGGAACCCTTACAAATGTAGTGAATTTCACAAA  838

seq1  TATCTTACCCAGAGAGAAAACCTACAAAGTCAGCAGAGAATTTATCATGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTACCCAGAGAGAAAACCTACAAAGTCAGCAGAGAATTTATCATGG  888

seq1  AAAGAAACCTTACAAAAGTAGTAAAAGTGACAAATGCTTTACCCATCAGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCTTACAAAAGTAGTAAAAGTGACAAATGCTTTACCCATCAGA  938

seq1  TCCATCTTAGTATTCATCAGGAAATTCATACAGAAGAGAAAATTTACAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTAGTATTCATCAGGAAATTCATACAGAAGAGAAAATTTACAAA  988

seq1  TGTAGTGAATGTGACAAATGTTTTAAAAACAAATTCAATCTTACTATGCA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGAATGTGACAAATGTTTTAAAAACAAATTCAATCTTACTATGCA  1038

seq1  TCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACA  1088

seq1  AATGCTTTACCAAACAATCCAATCTTAGTATTCATCAGAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTACCAAACAATCCAATCTTAGTATTCATCAGAGAATTC  1133

seq1: chr10_129315744_129316707
seq2: B6Ng01-203C22.g_63_831 (reverse)

seq1  ACATTTGAGGGTGAACAAATAAAAAGGTGTCATGAAAAGCTTTCTACAGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCTGGTGAGATGGCTCAGTGGGTAAGAACACTGACTGCTCTTCCAAAGGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCAAAAAAAGAGATCTG  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACACCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACATTATTTATA  200
                               |||  | ||| ||            
seq2  -------------------------ACA-TTTCAGGGT------------  12

seq1  TAATAAATAAATAAATAAATCTTAAAAAAAAATGAAAGCTTTCTACAGCA  250
       || ||||||| |||    || | |         ||||||||||||| | 
seq2  GAACAAATAAA-AAAGGTGTCATGA---------AAAGCTTTCTACATCT  52

seq1  GGGCGTGGTGGCACATGTCTTTAATCCTAGCACTCAGGAGAGAGAGGCAG  300
      |||| |||||||||||||| ||||||| |||||||  |||  ||||||||
seq2  GGGCATGGTGGCACATGTC-TTAATCCCAGCACTC-CGAGGCAGAGGCAG  100

seq1  GCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTA------------CAGGA  338
      || ||||| |||||  ||| |||||||||||||            |||||
seq2  GCGGATTTTTGAGTCGAAGCCCAGCCTGGTCTACAGAGTGAGTTCCAGGA  150

seq1  TGGCCATGGATATACAGAGAATACCTGTCTCTAAAAACCAACCAAGAAAA  388
       |||||||||||||| |||||  ||||||||||||| ||||||||     
seq2  CGGCCATGGATATACTGAGAAACCCTGTCTCTAAAACCCAACCAA-----  195

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  438
                     ||| ||| ||| |||||||||||||||||||||||
seq2  ---------------AAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAA  230

seq1  GAAATGCTTGCTACATTTTCATATTGTCAG---------------AATTG  473
      ||||||||||||||||||||||||||||||               | |||
seq2  GAAATGCTTGCTACATTTTCATATTGTCAGAGTTTCTCCCAACATAGTTG  280

seq1  ACATTATTTAAGATTTGAACATTGCATGAAAATTTTCACAAGATTTTCAT  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTTAAGATTTGAACATTGCATGAAAATTTTCACAAGATTTTCAT  330

seq1  AATCATACTAATTCTCTAGTGTGGAGCCTTGAGTATTGCCAAGAATATGC  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATACTAATTCTCTAGTGTGGAGCCTTGAGTATTGCCAAGAATATGC  380

seq1  CATGAATAAAACATATGCCACCTTTTTCTCAACAGAAATAGTTTCCCTTA  623
      ||||||||||||| ||||||||||||||||||||||||||  ||||||||
seq2  CATGAATAAAACAAATGCCACCTTTTTCTCAACAGAAATATGTTCCCTTA  430

seq1  AAAAGTTCTTAGATGATTTCTCTGACCAAAAATGAATTCAAAAATATTTC  673
      ||||| ||||||||| |||||||||||||||||||| ||||| |||||||
seq2  AAAAGGTCTTAGATGTTTTCTCTGACCAAAAATGAAGTCAAAGATATTTC  480

seq1  TTCATACAATACATGCGTTAAGTTTCTAGCTTATAAGTATTCACTGTTAC  723
      |||||||||||||||||||  ||||||||| |||||||||||||||||||
seq2  TTCATACAATACATGCGTT--GTTTCTAGCCTATAAGTATTCACTGTTAC  528

seq1  ATTCTAGGAAATAGGTAAAAAATAAAGAATTCATACCTTCGATATATTTG  773
      |||||| |||| ||| ||||||| ||||||||||||||| |||| |||||
seq2  ATTCTAAGAAACAGGCAAAAAAT-AAGAATTCATACCTTTGATACATTTG  577

seq1  AAAAGTTCCTCTTCTGTAACTATTCTCTAATGAATTTTAAGATGATGTAT  823
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTCTCTTCTGTAACTATTCTCTAATGAATTTTAAGATGATGTAT  627

seq1  CTTGGTAAAGGATTGTCT-ATTCACTTCATTTATAAAGATTCTCTACTGT  872
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTGGTAAAGGATTGTCTCATTCACTTCATTTATAAAGATTCTCTACTGT  677

seq1  ATGAAATAACTGATGGTTTCTCAGACTGACATTGTGAGTATTGTATTTGT  922
      ||||||||||||||  ||||||||||||||||||||| ||||||||||||
seq2  ATGAAATAACTGATCATTTCTCAGACTGACATTGTGATTATTGTATTTGT  727

seq1  CACATACAATCTATTTGTAAGGTTTCTCTCCTGTATGAATTC  964
      ||| ||||| ||||||||||||||||||||||||||||||||
seq2  CACGTACAAACTATTTGTAAGGTTTCTCTCCTGTATGAATTC  769