BAC Information

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BAC

Clone NameB6Ng01-204G17
Chromosome10 (Build37)
Map Location 36,395,729 - 36,530,345
singlet/doubletdoublet
Overlap geneHs3st5
Upstream geneLOC100041585, LOC667860
Downstream geneHdac2, Marcks, LOC100040846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204G17.bB6Ng01-204G17.g
ACCGA024372GA024373
length1,199960
definitionB6Ng01-204G17.b B6Ng01-204G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,395,729 - 36,396,921)(36,529,386 - 36,530,345)
sequence
gaattccaatatggaaaaaagggagaccatcccaacctcagtacacaggt
ttctagagattttcaggcctgcataatggcttcaaaatctcccatggaat
gtggcttgttgtgtctttttattctctcaaaatgtccacttaatattgtt
cagtgaacaggagccagcttttagagaattaattatttatggccttgcag
attttgtgaatgaaaggataaaatgtctaaatgaattcagttagaattag
agagttgggttttaagctaattatcccaaattgaatttgtttctatcaat
atgatttttttctccaaaaatatgccttgtatttttttctttcttttttt
attttctttttttaaaattagatattttctttatttacatttcaaatgct
atcccaaaagttccctataccctcccaccaccctgctcccctacccaccc
actcctacttcttggccctggcattcccctgtactggggcatagaaagtt
tgcaagtcctagggacctctcttcccaatgatggcaggctaggccatctt
ctgctacatatgcagctagagacacgagctctgggggtactggttagttc
atactgttgttccacccatagggttgccaaccacatcagctccttgagta
ctttctctaggaggtatatacacaaggaatctagtgacatctattaaggt
taggtctgggtgcatttctctttactatacatttaggtgagcaggatact
tccttgaactaagcagaatatgttcagaaattatatttgtgctgggatat
taccttgtaggaatagctttctgatttacagaagagagtaattgaccaaa
agaatataggaacataatctcatatttgttactattatgatgatgttgca
tttatataaaatgtcattcaactgatgatatttattatttataaatgaga
tgtctgattaggaaagtataacaattaacacttatgaatgtccaactgac
atttatgaactaattatggctaaggaatttgttaatactatttcacttta
tgccttgaaaaatccttcaggtttataaccttttttttcttccattattt
attataccatattattgataataatgggcctgacacaaacactactttaa
aggttaatgacaatttgtataacatgatgtgaatttaacctaaaatctc

gaattctatttaacccccaaatggcttacttgtgtgttcttctctaatgt
cactttcccagattaagaatgtgtcttttcattattgaattatcacccgc
acttaaggtggcagatgctcagcaaacaattgctgaataatcaagtcagt
tagatggggaaggactttaatatcctgaaagctgtgacgcctggttgctg
cctctttttaactgaatagagacactttatctttacctgctgttggcagg
ctcatcaagtgctgtgcatctgaaagtgatctcattttcctgcctttttg
agaaaacctgggtgcttatgtatcccttgcctagattccacagttgttaa
cattttggtatctatatgctttatgtcccacttattgctatgtaagcaca
tactaattttactaagccatttaaaaacaaatggccgaacccagccttgc
atcatccgaaggccccttatgatgaccaccagacttgagagggaagaagg
gcagtgacattcctgtctcagaggcttaggaggtgacatggcccagggag
agcttcaaactgtctagtctaatgactgtaagctgctaaccttgggatcc
ctagggcgccacttttccttctagggaacgttgcaaacgtttacaggtcc
cactggtagaatttgtgtagtcccacctttgcataaattcaacttatgaa
gtatggtgagctgtgtcacaaaaacaaaacaaaattgaaaaaattaatga
agacgaaagccagccagacagaggggtatggggtggagaaaatattccct
ggagagtttttgtctcatgcattttactcccccttttatttctctagaga
aagaaatctgaaaaagcaagttgttattctacacgagtttgggtggcaga
tgatacccatccattggcatttcttacagctgactcctgcagcaagccag
ttggtgtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_36395729_36396921
seq2: B6Ng01-204G17.b_44_1242

seq1  GAATTCCAATATGGAAAAAAGGGAGACCATCCCAACCTCAGTACACAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATATGGAAAAAAGGGAGACCATCCCAACCTCAGTACACAGGT  50

seq1  TTCTAGAGATTTTCAGGCCTGCATAATGGCTTCAAAATCTCCCATGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGATTTTCAGGCCTGCATAATGGCTTCAAAATCTCCCATGGAAT  100

seq1  GTGGCTTGTTGTGTCTTTTTATTCTCTCAAAATGTCCACTTAATATTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTGTTGTGTCTTTTTATTCTCTCAAAATGTCCACTTAATATTGTT  150

seq1  CAGTGAACAGGAGCCAGCTTTTAGAGAATTAATTATTTATGGCCTTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAACAGGAGCCAGCTTTTAGAGAATTAATTATTTATGGCCTTGCAG  200

seq1  ATTTTGTGAATGAAAGGATAAAATGTCTAAATGAATTCAGTTAGAATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGAATGAAAGGATAAAATGTCTAAATGAATTCAGTTAGAATTAG  250

seq1  AGAGTTGGGTTTTAAGCTAATTATCCCAAATTGAATTTGTTTCTATCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGGGTTTTAAGCTAATTATCCCAAATTGAATTTGTTTCTATCAAT  300

seq1  ATGATTTTTTTCTCCAAAAATATGCCTTGTATTTTTTTCTTTCTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTTTTCTCCAAAAATATGCCTTGTATTTTTTTCTTTCTTTTTTT  350

seq1  ATTTTCTTTTTTTAAAATTAGATATTTTCTTTATTTACATTTCAAATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTTTTTAAAATTAGATATTTTCTTTATTTACATTTCAAATGCT  400

seq1  ATCCCAAAAGTTCCCTATACCCTCCCACCACCCTGCTCCCCTACCCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAAAGTTCCCTATACCCTCCCACCACCCTGCTCCCCTACCCACCC  450

seq1  ACTCCTACTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCATAGAAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTACTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCATAGAAAGTT  500

seq1  TGCAAGTCCTAGGGACCTCTCTTCCCAATGATGGCAGGCTAGGCCATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTCCTAGGGACCTCTCTTCCCAATGATGGCAGGCTAGGCCATCTT  550

seq1  CTGCTACATATGCAGCTAGAGACACGAGCTCTGGGGGTACTGGTTAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACATATGCAGCTAGAGACACGAGCTCTGGGGGTACTGGTTAGTTC  600

seq1  ATACTGTTGTTCCACCCATAGGGTTGCCAACCACATCAGCTCCTTGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTTGTTCCACCCATAGGGTTGCCAACCACATCAGCTCCTTGAGTA  650

seq1  CTTTCTCTAGGAGGTATATACACAAGGAATCTAGTGACATCTATTAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTAGGAGGTATATACACAAGGAATCTAGTGACATCTATTAAGGT  700

seq1  TAGGTCTGGGTGCATTTCTCTTTACTATACATTTAGGTGAGCAGGATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTGGGTGCATTTCTCTTTACTATACATTTAGGTGAGCAGGATACT  750

seq1  TCCTTGAACTAAGCAGAATATGTTCAGAAATTATATTTGTGCTGGGATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAACTAAGCAGAATATGTTCAGAAATTATATTTGTGCTGGGATAT  800

seq1  TACCTTGTAGGAATAGCTTTCTGATTTACAGAAGAGAGTAATTGACCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGTAGGAATAGCTTTCTGATTTACAGAAGAGAGTAATTGACCAAA  850

seq1  AGAATATAGGAACATAATCTCATATTTGTTACTATTATGATGATGTTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAGGAACATAATCTCATATTTGTTACTATTATGATGATGTTGCA  900

seq1  TTTATATAAAATGTCATTCAACTGATGATATTTATTATTTATAAATGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAAAATGTCATTCAACTGATGATATTTATTATTTATAAATGAGA  950

seq1  TGTCTGATTAGGAAAGTAATAACAATTAACACTTATGAATGTCC-ACTGA  999
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  TGTCTGATTAGGAAAGT-ATAACAATTAACACTTATGAATGTCCAACTGA  999

seq1  CATTTATGAACTAATTAT-GCTAAGGAATTTG-TAATACTATTTCAC-TT  1046
      |||||||||||||||||| ||||||||||||| |||||||||||||| ||
seq2  CATTTATGAACTAATTATGGCTAAGGAATTTGTTAATACTATTTCACTTT  1049

seq1  ATGCC-TGAAAAATCCTTCA-GTTTATAAAC--TTTTTTCTTCCA-TATA  1091
      ||||| |||||||||||||| |||||||| |  |||||||||||| ||| 
seq2  ATGCCTTGAAAAATCCTTCAGGTTTATAACCTTTTTTTTCTTCCATTATT  1099

seq1  TA-TATA-CATATATATATGAAAATAA-AGGCATGACAAAACAAACTACT  1138
      || |||| ||||| ||| ||| |||||  ||| ||||| || | ||||||
seq2  TATTATACCATAT-TAT-TGATAATAATGGGCCTGACACAA-ACACTACT  1146

seq1  TTTACAAGGTTAATGACAATATTTGATAGAATGATGTGAATAT-ACCTAA  1187
      ||   ||||||||||||||| ||  |||  ||||||||||| | ||||||
seq2  TT--AAAGGTTAATGACAAT-TTGTATAACATGATGTGAATTTAACCTAA  1193

seq1  AATCTC  1193
      ||||||
seq2  AATCTC  1199


seq1: chr10_36529386_36530345
seq2: B6Ng01-204G17.g_64_1022 (reverse)

seq1  ACACACCAACTGGCTTGCTGCAGGAGTCAGCTGTA--GAATGCCAATGGA  48
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  ACACACCAACTGGCTTGCTGCAGGAGTCAGCTGTAAGAAATGCCAATGGA  50

seq1  TGGGTATCATCCTGCCACCCAAACTCGTGTTAGAATAACAACTTGCTTTT  98
      |||||||||| |||||||||||||||||| |||||||||||||||| |||
seq2  TGGGTATCAT-CTGCCACCCAAACTCGTG-TAGAATAACAACTTGC-TTT  97

seq1  TTCAGATTTCTTTCTCTAGAGAAATTAAAAGGGGGAGTAAAATGCATGAG  148
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTCAGATTTCTTTCTCTAGAGAAA-TAAAAGGGGGAGTAAAATGCATGAG  146

seq1  ACAAAAACTCTCCAGGGAATATTTTCTCCACCCCATACCCCTCTGTCTGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACTCTCCAGGGAATATTTTCTCCACCCCATACCCCTCTGTCTGG  196

seq1  CTGGCTTTCGTCTTCATTAATTTTTTCAATTTTGTTTTGTTTTTGTGACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTCGTCTTCATTAATTTTTTCAATTTTGTTTTGTTTTTGTGACA  246

seq1  CAGCTCACCATACTTCATAAGTTGAATTTATGCAAAGGTGGGACTACACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCACCATACTTCATAAGTTGAATTTATGCAAAGGTGGGACTACACA  296

seq1  AATTCTACCAGTGGGACCTGT-AACGTTTGCAACGTTCCCTAGAAGGAAA  347
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AATTCTACCAGTGGGACCTGTAAACGTTTGCAACGTTCCCTAGAAGGAAA  346

seq1  AGTGGCGCCCTAGGGATCCCAAGGTTAGCAGCTTACAGTCATTAGACTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCGCCCTAGGGATCCCAAGGTTAGCAGCTTACAGTCATTAGACTAG  396

seq1  ACAGTTTGAAGCTCTCCCTGGGCCATGTCACCTCCTAAGCCTCTGAGACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTGAAGCTCTCCCTGGGCCATGTCACCTCCTAAGCCTCTGAGACA  446

seq1  GGAATGTCACTGCCCTTCTTCCCTCTCAAGTCTGGTGGTCATCATAAGGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTCACTGCCCTTCTTCCCTCTCAAGTCTGGTGGTCATCATAAGGG  496

seq1  GCCTTCGGATGATGCAAGGCTGGGTTCGGCCATTTGTTTTTAAATGGCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCGGATGATGCAAGGCTGGGTTCGGCCATTTGTTTTTAAATGGCTT  546

seq1  AGTAAAATTAGTATGTGCTTACATAGCAATAAGTGGGACATAAAGCATAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATTAGTATGTGCTTACATAGCAATAAGTGGGACATAAAGCATAT  596

seq1  AGATACCAAAATGTTAACAACTGTGGAATCTAGGCAAGGGATACATAAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCAAAATGTTAACAACTGTGGAATCTAGGCAAGGGATACATAAGC  646

seq1  ACCCAGGTTTTCTCAAAAAGGCAGGAAAATGAGATCACTTTCAGATGCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGTTTTCTCAAAAAGGCAGGAAAATGAGATCACTTTCAGATGCAC  696

seq1  AGCACTTGATGAGCCTGCCAACAGCAGGTAAAGATAAAGTGTCTCTATTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGATGAGCCTGCCAACAGCAGGTAAAGATAAAGTGTCTCTATTC  746

seq1  AGTTAAAAAGAGGCAGCAACCAGGCGTCACAGCTTTCAGGATATTAAAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAAGAGGCAGCAACCAGGCGTCACAGCTTTCAGGATATTAAAGT  796

seq1  CCTTCCCCATCTAACTGACTTGATTATTCAGCAATTGTTTGCTGAGCATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCATCTAACTGACTTGATTATTCAGCAATTGTTTGCTGAGCATC  846

seq1  TGCCACCTTAAGTGCGGGTGATAATTCAATAATGAAAAGACACATTCTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTTAAGTGCGGGTGATAATTCAATAATGAAAAGACACATTCTTA  896

seq1  ATCTGGGAAAGTGACATTAGAGAAGAACACACAAGTAAGCCATTTGGGGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGAAAGTGACATTAGAGAAGAACACACAAGTAAGCCATTTGGGGG  946

seq1  TTAAATAGAATTC  960
      |||||||||||||
seq2  TTAAATAGAATTC  959


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