BAC Information

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BAC

Clone NameB6Ng01-204J08
Chromosome10 (Build37)
Map Location 52,938,158 - 53,042,471
singlet/doubletdoublet
Overlap genenone
Upstream geneDcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1
Downstream genePln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204J08.bB6Ng01-204J08.g
ACCGA024486GA024487
length757693
definitionB6Ng01-204J08.b B6Ng01-204J08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,938,158 - 52,938,909)(53,041,902 - 53,042,471)
sequence
gaattccacattagaaatcatgataaaataagaatcaatgcatcatatga
tgggaccacaatttgaggacagggcgaagaagttcaaaaacttgctagca
agtaactcccatcctttttccaagaaagaggtccaaaagaggccagaagg
acctttttttttttaaactaccttctgcaaattcttgcagcccacatgga
taggttgaaagtgctcagattaaagtgagaaaagttgtcagggagagaac
ttgtattgccaagtaagttatttttaattaatatgtgttagaaccaagag
catgtcaggaagctagaatgaggatgcgctctcactgtctggcagaaaat
ttttagctctaaccttcatttttacatttatacagtttgcaacttgtgcc
agtcactttcctgggtaaactatcaagtgtagagttgttccctggccata
attaagaatgtctgtagcaagaaaaatggaagaactatcacatcatttta
ggagtcaagagttatctgtaacctttgttctctgtgcagtagaatctagc
cataagcaatagaaggctttccctttatttttcagtgagtagtctatgtt
atatagtatttgaccagtattcatctacattgaaatggattcagtgctcc
ataatgtgaagtttattgttgttcagctgtttgcttgggaaatggtcatg
atgttatacagagagtctaatgactttatataaaaaacagaaaaaagact
gagaggt
gaattctttatttccctctctgtcttctatctgtccaaagtctgtgtttc
ctgataaatacatggatagtttgctgtgtgcatcagatctgtctgtccat
gtgcctgtgtttgctctgtgtctttcacctgtctgggtcttgtacctatc
ccctaatcaaggacttttctttgtgtttgttaaacagtaaagaaaacatg
gcatgggaaaaaattagggattcttgacagaaatctttaatagaattttg
caagtatagaaatgaactgacccagaatagcacaatcctctcacagattt
tatcaacctatatctacttccaacatttatggtagatatttgttttgctt
acttgtaacctgttggctgctattagcaaatgattaccataacatacata
tacatgcatatatacatgtattccgagtcagggctatgcctggatttatt
tcagttgtagttccttctactgaatgtagtcagtcttctagtattgtttg
gagagctgttttacacaggaagtaactagccaaaaaaggtgccattcata
gctagaatagagtcctcaaaaatcctttgtatgctggaatatagctcctt
attgtggggtgtactaaacagtgggttcagtgtggaaagggaaaaaaaat
gaaaggaggggggtggagctaagttatcaaccacatgggaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_52938158_52938909
seq2: B6Ng01-204J08.b_48_804

seq1  GAATTCCACA-TAGAAATCATGATAAAATAAGAATCAATGCATCATATGA  49
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATTAGAAATCATGATAAAATAAGAATCAATGCATCATATGA  50

seq1  TGGGACCACAATTTGAGGACAGGGCGAAGAAGTTCAAAAACTTGCTAGCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCACAATTTGAGGACAGGGCGAAGAAGTTCAAAAACTTGCTAGCA  100

seq1  AGTAACTCCCATCCTTTTTCCAAGAAAGAGGTCCAAAAGAGGCCAGAAGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTCCCATCCTTTTTCCAAGAAAGAGGTCCAAAAGAGGCCAGAAGG  150

seq1  ACCTTTTTTTTTTTAAACTACCTTCTGCAAATTCTTGCAGCCCACATGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTTTTTTTAAACTACCTTCTGCAAATTCTTGCAGCCCACATGGA  200

seq1  TAGGTTGAAAGTGCTCAGATTAAAGTGAGAAAAGTTGTCAGGGAGAGAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGAAAGTGCTCAGATTAAAGTGAGAAAAGTTGTCAGGGAGAGAAC  250

seq1  TTGTATTGCCAAGTAAGTTATTTTTAATTAATATGTGTTAGAACCAAGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTGCCAAGTAAGTTATTTTTAATTAATATGTGTTAGAACCAAGAG  300

seq1  CATGTCAGGAAGCTAGAATGAGGATGCGCTCTCACTGTCTGGCAGAAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGGAAGCTAGAATGAGGATGCGCTCTCACTGTCTGGCAGAAAAT  350

seq1  TTTTAGCTCTAACCTTCATTTTTACATTTATACAGTTTGCAACTTGTGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTCTAACCTTCATTTTTACATTTATACAGTTTGCAACTTGTGCC  400

seq1  AGTCACTTTCCTGGGTAAACTATCAAGTGTAGAGTTGTTCCCTGGCCATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTTCCTGGGTAAACTATCAAGTGTAGAGTTGTTCCCTGGCCATA  450

seq1  ATTAAGAATGTCTGTAGCAAGAAAAATGGAAGAACTATCACATCATTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAATGTCTGTAGCAAGAAAAATGGAAGAACTATCACATCATTTTA  500

seq1  GGAGTCAAGAGTTATCTGTAACCTTTGTTCTCTGTGCAGTAGAATCTAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAAGAGTTATCTGTAACCTTTGTTCTCTGTGCAGTAGAATCTAGC  550

seq1  CATAAGCAATAGAAGGCTTTCCCTTTATTTTTCAGTGAGTAGTCTATGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCAATAGAAGGCTTTCCCTTTATTTTTCAGTGAGTAGTCTATGTT  600

seq1  ATATAGTATTTGACCAGTATTCATCTACATTG-AATGGATTCAGTGCTCC  648
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATATAGTATTTGACCAGTATTCATCTACATTGAAATGGATTCAGTGCTCC  650

seq1  ATAATGTGAAGTTTATTGTTGTTCAGCTG-TTGCTTGGGAAATGGTCATG  697
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATAATGTGAAGTTTATTGTTGTTCAGCTGTTTGCTTGGGAAATGGTCATG  700

seq1  ATGTTATACAGAGAGTCTAATGACTTTATAT-AAAAACAG-AAAAAGACT  745
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  ATGTTATACAGAGAGTCTAATGACTTTATATAAAAAACAGAAAAAAGACT  750

seq1  GAGAGGT  752
      |||||||
seq2  GAGAGGT  757

seq1: chr10_53041902_53042471
seq2: B6Ng01-204J08.g_194_766 (reverse)

seq1  -TTTTCCATGTGGTTGATGACTTAGCTCCA-CCCCCTCCTTTCA-TTTTT  47
       ||| ||||||||||||| ||||||||||| ||||||||||||| |||||
seq2  TTTTCCCATGTGGTTGATAACTTAGCTCCACCCCCCTCCTTTCATTTTTT  50

seq1  TTCCCTTTCCACACTGAACCCACTGTTTAGTACACCCCACAATAAGGAGC  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTCCACACTGAACCCACTGTTTAGTACACCCCACAATAAGGAGC  100

seq1  TATATTCCAGCATACAAAGGATTTTTGAGGACTCTATTCTAGCTATGAAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCAGCATACAAAGGATTTTTGAGGACTCTATTCTAGCTATGAAT  150

seq1  GGCACCTTTTTTGGCTAGTTACTTCCTGTGTAAAACAGCTCTCCAAACAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTTTTTTGGCTAGTTACTTCCTGTGTAAAACAGCTCTCCAAACAA  200

seq1  TACTAGAAGACTGACTACATTCAGTAGAAGGAACTACAACTGAAATAAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGAAGACTGACTACATTCAGTAGAAGGAACTACAACTGAAATAAAT  250

seq1  CCAGGCATAGCCCTGACTCGGAATACATGTATATATGCATGTATATGTAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCATAGCCCTGACTCGGAATACATGTATATATGCATGTATATGTAT  300

seq1  GTTATGGTAATCATTTGCTAATAGCAGCCAACAGGTTACAAGTAAGCAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGTAATCATTTGCTAATAGCAGCCAACAGGTTACAAGTAAGCAAA  350

seq1  ACAAATATCTACCATAAATGTTGGAAGTAGATATAGGTTGATAAAATCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATCTACCATAAATGTTGGAAGTAGATATAGGTTGATAAAATCTG  400

seq1  TGAGAGGATTGTGCTATTCTGGGTCAGTTCATTTCTATACTTGCAAAATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGATTGTGCTATTCTGGGTCAGTTCATTTCTATACTTGCAAAATT  450

seq1  CTATTAAAGATTTCTGTCAAGAATCCCTAATTTTTTCCCATGCCATGTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAAGATTTCTGTCAAGAATCCCTAATTTTTTCCCATGCCATGTTT  500

seq1  TCTTTACTGTTTAACAAACACAAAGAAAAGTCCTTGATTAGGGGATAGGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTGTTTAACAAACACAAAGAAAAGTCCTTGATTAGGGGATAGGT  550

seq1  ACAAGACCCAGACAGGTGAAAGA  570
      |||||||||||||||||||||||
seq2  ACAAGACCCAGACAGGTGAAAGA  573