BAC Information

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BAC

Clone NameB6Ng01-204P11
Chromosome10 (Build37)
Map Location 33,584,243 - 33,585,412
singlet/doubletsinglet
Overlap geneSult3a1
Upstream geneTcba1, EG667761, Trdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399
Downstream geneRshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204P11.bB6Ng01-204P11.g
ACCGA024770GA024771
length1,1671,040
definitionB6Ng01-204P11.b B6Ng01-204P11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatttaatctatttcactaggtttcatttactaaattaaattca
ttatatagataataagtttattattaataatagataaattatttttataa
tttatcatttattaatgtttttcccattaaattcactgcataaaaataaa
aataatgtattaattaattattgcttattgatggttacctcagataatta
actggtggacttgatttgcttggtcactacttccaagaagtgtgatgagt
cttaaattttgtaagaactgctcatgacatcagtcctcagagcttgtaat
aatgtatgtgtctggtatcctgcattgcacaagatgaacagccattgtcc
atttcaatcttactgaggaccttcataagctcctagtgaatgtttagtgg
ctgagttatttagttattacctacagtgaaacagatttcttttctcacag
agtttttcaagttctgtaacatattctacattgcaaggatgaaaagcaaa
gtagaatttagtacaaacaaatatttttgcaaactatccttactaaaatg
gtctaacatgacataaaagcttggtgttattatgtaaggacaagaatact
ttgagagaagcatgagaaatattagcagctgtagctttactctttagtct
gtgtcaaaaactcaaaccaagacatccaagtttcatcttctgctgaagat
atacttttgctatgaaaataagaaaaatccttaaggaatatgcttcaatt
ctttacaaatggaatttgagaggatgtacctgcttaaaaggactatacaa
taaaacagaagtttttatgactagcttgtcctgattaggcttcacaaacc
taaaaaataatcctaggaaaccccactgctcaagaattttttcctgcttt
ctgagaatttgaagaatattacagttatctcagaaatctttgtcaacaaa
ttaaatgtattggaaattgaatcattgtttgagaaaaagcctctaaataa
taaagcatttttcttttgcagaaaaagttttggactagcctcagtctcat
tcaacagctaagcattcatcatcattacaggtagcctgctattggtcaga
acttttaccttctcttattttcccaccatataaaataattgcataggcaa
atgtgtcccatagggac
gaattcctggaagttttgagttaggatctttttgcattttgcattttctt
tgattgtcgtttccatgttccctatggaatcttctgcacctgagattctc
tcttccatctcttgtattctgttcctgatgctcgtatctatggttcctga
tttctttcctagggtttctatctccagagttgtctcccttttggttttct
ttattgtttctacttcaatttttagatcctggatggatttgttcatttcc
atcaccttttgggtagtgttttcctgtaatgctctcagacatttttgtgt
ttcctctttaaaggcttctagctgtttacctgtgtttttctgtatttcct
tcttaaagtcctccatcatcatcatcagaagtgactttagagccatgtct
tgtttttctggtgtgatggtgtatctaggacttgctattgtgggagagtt
tgattctgatgatgccaactaaccttgatttctgttgcttctgttcttat
acttgcctcctgccctctgattatctcaagtatttgctgtcctcaatata
tctgattggaacctgtccttcctataatcccagttgattcaggactcgtc
agagtccagctttctctgtgatcctttgcttgtgggctccagtgaaactg
aaattgcggatgtgtcagagttcttggcagtcaagttcctctgagaccct
gaaatactggtgtgaccaagatccttttatcctaggatcctgttgtcaaa
gatcctgggtctgttacagtgcctggaagtggtgtctcctttgaggaggg
tggagctgtctggtccgttggtcctaagatcgcatagagagtcctctaaa
ggaccattggggggtttctgctgactccgcacataaagtgacccagtgct
ggcaccgaccagaagggaactttgtgcccctgggccaggccggttttctg
cttccctaatgctgtctcagtcccacctgattggaattggaacagaagtt
ggtttccactcaccagtggttcctaagattgagctgtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_33584243_33585412
seq2: B6Ng01-204P11.b_48_1214 (reverse)

seq1  GTCCCTATGG--CACATTTTGCTATGCATATATTTTAATTTATTGTGGAA  48
      ||||||||||  |||||||  |||||||  |||||||   ||| |||| |
seq2  GTCCCTATGGGACACATTTGCCTATGCAATTATTTTA---TATGGTGGGA  47

seq1  AAAT-AGAGAGGTAAAAAGTCCTTGGCCAATAGCA-GCTACTTGGTAAAT  96
      |||| ||||| |  |||||| | || ||||||||| ||||| ||   |||
seq2  AAATAAGAGAAGGTAAAAGTTC-TGACCAATAGCAGGCTACCTG--TAAT  94

seq1  GATGATGAATGCCTTAGCCTGTTGAATGAGACTGA-GCTAGTCCAAAACC  145
      ||||||||||| ||||| ||||||||||||||||| |||||||||||| |
seq2  GATGATGAATG-CTTAG-CTGTTGAATGAGACTGAGGCTAGTCCAAAA-C  141

seq1  TTTTTCTGCAAAAGAAAAATGCTTTATTATTTAGAGGCTTTTTCTCAAAC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGCAAAAGAAAAATGCTTTATTATTTAGAGGCTTTTTCTCAAAC  191

seq1  AATGATTCAATTTCCAATACATTTAATTTGTTGAC-AAGATTTCTGAGAT  244
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATGATTCAATTTCCAATACATTTAATTTGTTGACAAAGATTTCTGAGAT  241

seq1  AACTGTAATATTCTTCAAATTCTCAGAAAGCAGGAAAAAATTCTTGAGCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAATATTCTTCAAATTCTCAGAAAGCAGGAAAAAATTCTTGAGCA  291

seq1  GTGGGGTTTCCTAGGATTATTTTTTAGGTTTGTGAAGCCTAATCAGGACA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTTTCCTAGGATTATTTTTTAGGTTTGTGAAGCCTAATCAGGACA  341

seq1  AGCTAGTCATAAAAACTTCTGTTTTATTGTATAGTCCTTTTAAGCAGGTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTCATAAAAACTTCTGTTTTATTGTATAGTCCTTTTAAGCAGGTA  391

seq1  CATCCTCTCAAATTCCATTTGTAAAGAATTGAAGCATATTCCTTAAGGAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTCAAATTCCATTTGTAAAGAATTGAAGCATATTCCTTAAGGAT  441

seq1  TTTTCTTATTTTCATAGCAAAAGTATATCTTCAGCAGAAGATGAAACTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTATTTTCATAGCAAAAGTATATCTTCAGCAGAAGATGAAACTTG  491

seq1  GATGTCTTGGTTTGAGTTTTTGACACAGACTAAAGAGTAAAGCTACAGCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTTGGTTTGAGTTTTTGACACAGACTAAAGAGTAAAGCTACAGCT  541

seq1  GCTAATATTTCTCATGCTTCTCTCAAAGTATTCTTGTCCTTACATAATAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATATTTCTCATGCTTCTCTCAAAGTATTCTTGTCCTTACATAATAA  591

seq1  CACCAAGCTTTTATGTCATGTTAGACCATTTTAGTAAGGATAGTTTGCAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGCTTTTATGTCATGTTAGACCATTTTAGTAAGGATAGTTTGCAA  641

seq1  AAATATTTGTTTGTACTAAATTCTACTTTGCTTTTCATCCTTGCAATGTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTGTTTGTACTAAATTCTACTTTGCTTTTCATCCTTGCAATGTA  691

seq1  GAATATGTTACAGAACTTGAAAAACTCTGTGAGAAAAGAAATCTGTTTCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGTTACAGAACTTGAAAAACTCTGTGAGAAAAGAAATCTGTTTCA  741

seq1  CTGTAGGTAATAACTAAATAACTCAGCCACTAAACATTCACTAGGAGCTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGTAATAACTAAATAACTCAGCCACTAAACATTCACTAGGAGCTT  791

seq1  ATGAAGGTCCTCAGTAAGATTGAAATGGACAATGGCTGTTCATCTTGTGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGTCCTCAGTAAGATTGAAATGGACAATGGCTGTTCATCTTGTGC  841

seq1  AATGCAGGATACCAGACACATACATTATTACAAGCTCTGAGGACTGATGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGGATACCAGACACATACATTATTACAAGCTCTGAGGACTGATGT  891

seq1  CATGAGCAGTTCTTACAAAATTTAAGACTCATCACACTTCTTGGAAGTAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCAGTTCTTACAAAATTTAAGACTCATCACACTTCTTGGAAGTAG  941

seq1  TGACCAAGCAAATCAAGTCCACCAGTTAATTATCTGAGGTAACCATCAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAGCAAATCAAGTCCACCAGTTAATTATCTGAGGTAACCATCAAT  991

seq1  AAGCAATAATTAATTAATACATTATTTTTATTTTTATGCAGTGAATTTAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATAATTAATTAATACATTATTTTTATTTTTATGCAGTGAATTTAA  1041

seq1  TGGGAAAAACATTAATAAATGATAAATTATAAAAATAATTTATCTATTAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAAACATTAATAAATGATAAATTATAAAAATAATTTATCTATTAT  1091

seq1  TAATAATAAACTTATTATCTATATAATGAATTTAATTTAGTAAATGAAAC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAAACTTATTATCTATATAATGAATTTAATTTAGTAAATGAAAC  1141

seq1  CTAGTGAAATAGATTAAATAGAATTC  1170
      ||||||||||||||||||||||||||
seq2  CTAGTGAAATAGATTAAATAGAATTC  1167