BAC Information

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BAC

Clone NameB6Ng01-206I15
Chromosome10 (Build37)3 (Build37)
Map Location 49,959,185 - 49,959,24137,218,563 - 37,219,769
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGrik2
Downstream geneLOC629652, Ascc3, Sim1, LOC268300
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206I15.bB6Ng01-206I15.g
ACCGA025929GA025930
length3921,187
definitionB6Ng01-206I15.b B6Ng01-206I15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,959,185 - 49,959,241)(37,218,563 - 37,219,769)
sequence
acacatccataaagcaagagctttgagggagctggtcatgttacaactgc
agccaagaagcagagagcaacatctgtagtactaagtttttaataaatcc
tgacacagggttcctctcccgctttagaccatttatgttcccaaaactga
agatgtatatatagcaggaagttagctgatgttggttgctatgtgtattc
taaggctaattttagttccccaaaactgtttgcacaagaggggttgcatg
tagcttcttggaacctgcctccagtaaatttggattggtaaataaaaatg
ccagaagcctatagctggggagaaaggcggggtttaggagtatgtatcca
tatatatatatatatatatatatatatatatattatatatat

gaattcatgccacccacctgccagggacttcagcacagtaggtctgtaga
cggacagagatgaggccatccaagaggaagaatcaggaagccatcctaaa
caagcatggtttcctctatttaaagattgctcagcaagaatttgaagatg
gctaagacataaaaattcaacagcaccaccgccaaggaagaccttctctt
cttttagggcatgatataaacgatacacacaagaccagaacctgtcttcc
ttggtttccatctgagcacttgctggactagtaagtactgctgtaatcaa
attaattccttctgctgttaacaagattgctattctgttgctcctgttta
tatcatgaggactcatccagaaggtcacagagaccccgctgcctacacag
tcttcattcacttgtgtaacataggctactggcactgctcttgtggcctc
tgcaaatgcctgcaacacactgccattcactgccccaattaccagccgct
tactgtgcatgcatttttcagtcaagtgttctgatacacttccttgtacc
aagatgagggtcacattgaactggattaacacctgtaacacatgatttgt
ccacagttcttctgcactatcttctgaaagctccccactatctaacttag
tcttaatatttacagacttattaaatcccaggtgtcggtaactctctgtg
aggtcaccctcaatgagaatcactcggaaaggctgatcctgcaattcctt
gataagagtaatactagacatggtaacaaaagtgacatatcctagaccaa
cacgggaaaaagtttcaggtagacctggaatacagcaagtgagaagtctt
gaaatatcaaacataaagggtgccatccagttggcttgctgcagacacag
actctgccactgcacctcactgctgctttggccaatgccatgctgctgtg
atctccatggctcaagccaactgctactccccaaaatcattacatctaag
tactttcggagttgattcagtgtctaagaaatcatcatgtcgctatcagt
ggcctatatctgtctataaaatgctactgtggacctagtgctgacttttg
cgaagatctgtttatagatgtttttccaacttgcaatgtggctctccggt
caagatattctgaagcttgaagaatttgggtgactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_49959185_49959241
seq2: B6Ng01-206I15.b_395_440 (reverse)

seq1  ATATATATATATATACATATATATATATATATATATATATATATATATAT  50
            |||||||||     ||||||||||||||||||||||||||||||
seq2  ------ATATATATA-----ATATATATATATATATATATATATATATAT  39

seq1  ATATGGA  57
      |||||||
seq2  ATATGGA  46


seq1: chr3_37218563_37219769
seq2: B6Ng01-206I15.g_64_1250 (reverse)

seq1  TGAGTCACCCAAATTCTTCAAACCTCAGAATAATCTTGAAACAGAAAAAA  50
      ||||||||||||||||||||| | ||||||| ||||||  || |  | | 
seq2  TGAGTCACCCAAATTCTTCAAGCTTCAGAAT-ATCTTG--ACCG-GAGAG  46

seq1  ACACATTGCAAGTTTTGAAAAACAATCTATATACAGATTCCTTCTGCAAA  100
       ||||||||||| || ||||||| ||||||| ||||||  |||| || ||
seq2  CCACATTGCAAG-TTGGAAAAAC-ATCTATAAACAGAT--CTTC-GC-AA  90

seq1  AAGTCAGCACTAGCT-CACAGTAGGCATTTTAATAGGACAGATAATAGCC  149
      ||||||||||||| | ||||||| ||||||| ||| ||||||||   |||
seq2  AAGTCAGCACTAGGTCCACAGTA-GCATTTT-ATA-GACAGATATAGGCC  137

seq1  ACTGGATAAGCCGACATGATGGATTTCTAGAACAACTTGAATCAACTCCG  199
      ||| ||||   ||||||||| |||||||   |||   |||||||||||||
seq2  ACT-GATA--GCGACATGAT-GATTTCTTAGACA--CTGAATCAACTCCG  181

seq1  AAAGTACTTAGATGTAATGATTTTGGGGAGTTAGCAGTTGGCTTGAGCCA  249
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAGTACTTAGATGTAATGATTTTGGGGAG-TAGCAGTTGGCTTGAGCCA  230

seq1  TGGAGATCACAGCAGCATGGCATTGGCCAAAGCAGCAGTGAGGTTGCAGT  299
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGAGATCACAGCAGCATGGCATTGGCCAAAGCAGCAGTGAGG-TGCAGT  279

seq1  GGCAGAGTCTGTGTCTGCAGCAAGCCAACTGGATGGCACCCTTTATGTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGTCTGTGTCTGCAGCAAGCCAACTGGATGGCACCCTTTATGTTT  329

seq1  GATATTTCAAGACTTCTCACTTGCTGTATTCCAGGTCTACCTGAAACTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTCAAGACTTCTCACTTGCTGTATTCCAGGTCTACCTGAAACTTT  379

seq1  TTCCCGTGTTGGTCTAGGATATGTCACTTTTGTTACCATGTCTAGTATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGTGTTGGTCTAGGATATGTCACTTTTGTTACCATGTCTAGTATTA  429

seq1  CTCTTATCAAGGAATTGCAGGATCAGCCTTTCCGAGTGATTCTCATTGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATCAAGGAATTGCAGGATCAGCCTTTCCGAGTGATTCTCATTGAG  479

seq1  GGTGACCTCACAGAGAGTTACCGACACCTGGGATTTAATAAGTCTGTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCTCACAGAGAGTTACCGACACCTGGGATTTAATAAGTCTGTAAA  529

seq1  TATTAAGACTAAGTTAGATAGTGGGGAGCTTTCAGAAGATAGTGCAGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGACTAAGTTAGATAGTGGGGAGCTTTCAGAAGATAGTGCAGAAG  579

seq1  AACTGTGGACAAATCATGTGTTACAGGTGTTAATCCAGTTCAATGTGACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGGACAAATCATGTGTTACAGGTGTTAATCCAGTTCAATGTGACC  629

seq1  CTCATCTTGGTACAAGGAAGTGTATCAGAACACTTGACTGAAAAATGCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTTGGTACAAGGAAGTGTATCAGAACACTTGACTGAAAAATGCAT  679

seq1  GCACAGTAAGCGGCTGGTAATTGGGGCAGTGAATGGCAGTGTGTTGCAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTAAGCGGCTGGTAATTGGGGCAGTGAATGGCAGTGTGTTGCAGG  729

seq1  CATTTGCAGAGGCCACAAGAGCAGTGCCAGTAGCCTATGTTACACAAGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCAGAGGCCACAAGAGCAGTGCCAGTAGCCTATGTTACACAAGTG  779

seq1  AATGAAGACTGTGTAGGCAGCGGGGTCTCTGTGACCTTCTGGATGAGTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGACTGTGTAGGCAGCGGGGTCTCTGTGACCTTCTGGATGAGTCC  829

seq1  TCATGATATAAACAGGAGCAACAGAATAGCAATCTTGTTAACAGCAGAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATATAAACAGGAGCAACAGAATAGCAATCTTGTTAACAGCAGAAG  879

seq1  GAATTAATTTGATTACAGCAGTACTTACTAGTCCAGCAAGTGCTCAGATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAATTTGATTACAGCAGTACTTACTAGTCCAGCAAGTGCTCAGATG  929

seq1  GAAACCAAGGAAGACAGGTTCTGGTCTTGTGTGTATCGTTTATATCATGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAAGGAAGACAGGTTCTGGTCTTGTGTGTATCGTTTATATCATGC  979

seq1  CCTAAAAGAAGAGAAGGTCTTCCTTGGCGGTGGTGCTGTTGAATTTTTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAGAAGAGAAGGTCTTCCTTGGCGGTGGTGCTGTTGAATTTTTAT  1029

seq1  GTCTTAGCCATCTTCAAATTCTTGCTGAGCAATCTTTAAATAGAGGAAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGCCATCTTCAAATTCTTGCTGAGCAATCTTTAAATAGAGGAAAC  1079

seq1  CATGCTTGTTTAGGATGGCTTCCTGATTCTTCCTCTTGGATGGCCTCATC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTGTTTAGGATGGCTTCCTGATTCTTCCTCTTGGATGGCCTCATC  1129

seq1  TCTGTCCGTCTACAGACCTACTGTGCTGAAGTCCCTGGCAGGTGGGTGGC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCGTCTACAGACCTACTGTGCTGAAGTCCCTGGCAGGTGGGTGGC  1179

seq1  ATGAATTC  1207
      ||||||||
seq2  ATGAATTC  1187


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