BAC Information

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BAC

Clone NameB6Ng01-207B20
Chromosome10 (Build37)2 (Build37)
Map Location 60,323,916 - 60,324,031139,167,898 - 139,168,553
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCbara1, LOC664936, Dnajb12, Ddit4, D10Ertd641e, Ascc1, Spock2, Chst3, LOC100039080, Psap, Cdh23, 4632428N05Rik, Slc29a3, Unc5b
Downstream genePcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207B20.bB6Ng01-207B20.g
ACCGA026353GA026354
length1,026810
definitionB6Ng01-207B20.b B6Ng01-207B20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,323,916 - 60,324,031)(139,167,898 - 139,168,553)
sequence
gaattcactctgtagaccaggctggcctcgaacttagaaatccacctgcc
tctgcctcccaagtgctgggattaaaggcgtgcgccaccactgcccagcc
tcagaagagattttaaacctttaaattgtgttaagacattgaaagactat
tggagttgaactaaatgtattttgaattatgataaggccataagcctctt
gaggacagagagtagaatgtagtgactataacaagaataacttccataag
tacatatactggaatacttggtcaccagttcgtaggaatgtttggaaaag
ggggaggatttgtggcctttttggaagtgtgtcactgggaatagactttg
aggttttaaaaagccctttcccagtatatccatctctctgcctctttata
agcaagcagccaaaattggcagcagtgacatgtggctccctgtctcttac
ttgtggataaggatgtaaactctcagagattgctctagcctatgtctacc
tgcttgctgccatgttccccaccatgacagccatggactcatcctatgaa
actgtaactcttctacaagtttcctgatcgtagtatctcaccacataaat
catagaataactcagatatattagaaggtttatgtgaaacttatttgaga
ctgaagtatgaaacctttgagacctcatcataattcagtaatggtatttt
atatacattattacaaagatgcagactcctctgttcagaatcccaaagac
ttttctgcaaatctgtgggatgtaggcacaggacattatacttttggtag
tcaaatctacactagtacagcagtgaaatgtgatggttagatgcttgtga
caggtttctttgacagtgccatatcttgtgggtgctctttacctgctggc
ataagcacacaggatgagccagcaaaggtgatttcacagaattgcaaagt
caagtctttccttggactgatgctgaaggcctcctcttgttttgtagaca
agtgtgagatcaaaatttgtctaatt
gaattctcacctgaggaataccgaagggctgagaatcacctgaaaaaatg
ttcagcatccttaatcatgagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagt
agatgctggcaaggatgtggagaaagagaaaaactcctccactgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcttca
ggaaattggacataatactaccagaggatctcgcaatagctctcctgggc
atatatccagaagatgttccaaccagtaagaaggatacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gtccctcaaccgaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggacctggagggcatcatgttgagtgacataacccaatcacaaa
agaactcacatgatatatactcactgataagtggatattatcccagaaac
ttaaattcttcattttatttcaataagcattattgagtacatactacaaa
gtagacatcatgtaatatactgatggttctgttggcatcatttacaaata
tttaatatccagtatggtatacagactaaccaatcaaaaatgaacattat
tcttccatgggaagtagagttattctaggatatttcttttcttaaatcta
actgagaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_60323916_60324031
seq2: B6Ng01-207B20.b_49_450 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  CTTGCTTATAAAGAGGCAGAGAGATGGATATACTGGGAAAGGGCTTTTTA  50

seq1  --------------------------------------------------  0
                                                        
seq2  AAACCTCAAAGTCTATTCCCAGTGACACACTTCCAAAAAGGCCACAAATC  100

seq1  --------------------------------------------------  0
                                                        
seq2  CTCCCCCTTTTCCAAACATTCCTACGAACTGGTGACCAAGTATTCCAGTA  150

seq1  --------------------------------------------------  0
                                                        
seq2  TATGTACTTATGGAAGTTATTCTTGTTATAGTCACTACATTCTACTCTCT  200

seq1  --------------------------------------------------  0
                                                        
seq2  GTCCTCAAGAGGCTTATGGCCTTATCATAATTCAAAATACATTTAGTTCA  250

seq1  -----------CTT------GCTT------ATAAAGAGGCTTACA-----  22
                 |||       |||      ||  | ||| ||| |     
seq2  ACTCCAATAGTCTTTCAATGTCTTAACACAATTTAAAGGTTTAAAATCTC  300

seq1  --------CCAGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGT  64
              |  |||||||||||||||||||||||||||||||||||||| 
seq2  TTCTGAGGCTGGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGA  350

seq1  GGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGT  114
      ||||||||||||  ||||||| ||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGGTGGATTTCTAAGTTCGAGGCCAGCCTGGTCTACAGAGT  400

seq1  GA  116
      ||
seq2  GA  402

seq1: chr2_139167898_139168553
seq2: B6Ng01-207B20.g_216_875

seq1  AGATGCTGGCAAGGATGTGGAGAAAGAGAAAAACTCCTCCACTGTTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGCAAGGATGTGGAGAAAGAGAAAAACTCCTCCACTGTTGGTG  50

seq1  GGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCTTCA  100

seq1  GGAAATTGGACATAATACTACCAGAGGATCTCGCAATAGCTCTCCTGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTGGACATAATACTACCAGAGGATCTCGCAATAGCTCTCCTGGGC  150

seq1  ATATATCCAGAAGATGTTCCAACCAGTAAGAAGGATACATGCTCCACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCAGAAGATGTTCCAACCAGTAAGAAGGATACATGCTCCACTAT  200

seq1  GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT  250

seq1  GTCCCTCAACCGAGGAATGGATACAGAAAATGTGGTACATTTACACAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCAACCGAGGAATGGATACAGAAAATGTGGTACATTTACACAATG  300

seq1  GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAA  350

seq1  ATGGTTGGACCTGGAGGGCATCATGTTGAGTGACATAACCCAATCACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGGACCTGGAGGGCATCATGTTGAGTGACATAACCCAATCACAAA  400

seq1  AGAACTCACATGATATATACTCACTGATAAGTGGATATTATCCCAGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCACATGATATATACTCACTGATAAGTGGATATTATCCCAGAAAC  450

seq1  TTAAATTCTTCATTT--ATTCAATAAGCATTATTGAGTACATACTACAAA  498
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  TTAAATTCTTCATTTTATTTCAATAAGCATTATTGAGTACATACTACAAA  500

seq1  GTAGACATCATGTAATATACTGATGGTTCTGTTGGCATCATTTACAAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACATCATGTAATATACTGATGGTTCTGTTGGCATCATTTACAAATA  550

seq1  TTTAATATCCAGTATGGTATACAGACTAACCAATCAAAAATGAACATTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATCCAGTATGGTATACAGACTAACCAATCAAAAATGAACATTAT  600

seq1  TCTTCCATGGGAAGTAGAGTTATTCTAGAATATT--CTTTCTAAAATCTA  646
      |||||||||||||||||||||||||||| |||||   ||||| |||||||
seq2  TCTTCCATGGGAAGTAGAGTTATTCTAGGATATTTCTTTTCTTAAATCTA  650

seq1  ACTGAGAAAC  656
      ||||||||||
seq2  ACTGAGAAAC  660