BAC Information

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BAC

Clone NameB6Ng01-207P07
Chromosome10 (Build37)
Map Location 80,807,495 - 80,975,184
singlet/doubletdoublet
Overlap geneHmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15
Upstream geneAdamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3
Downstream geneGna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207P07.bB6Ng01-207P07.g
ACCGA026963GA026964
length546768
definitionB6Ng01-207P07.b B6Ng01-207P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,807,495 - 80,808,046)(80,974,418 - 80,975,184)
sequence
caggctagccttggctacatgagacattgtcacaaaacaaaactcagatg
aacttaatccttcctcagttgataagtggaggtgctcccctctctcccgg
ggctgtgggaggctgtcttcgactctggcagtccttgactggccttggcc
cacaggcctgttgtgcagtttctgcctctgttgtcactaagcccgctcct
aggcctgtgttaactttcctgttctcaaaatgatactcgctgctggcata
gtgcccactctaccccaacatgacctcactcaagttaatctcactgtttt
cctcctgattcccaataaggccatgcctgggggttctggggtgaggacag
gagcacatttggggggatacaattccttggcacagcatatgtgtgctgga
ttgggaagttttacaagatattctatctcattaattaaacagagtccctt
ggcagggctcttcaagtttgagccagaggtatcttccacagttatctgcc
acatcccacagctcctgccctggggcagggcaggggtggggggagg
gaattccaccttctggactccgcggtgtagtgagtctaggatttgtgggc
ggaggggtcatggagttggagcacagggatacggggccaatgggcatgtg
ggtaaggtctcaggggcctggcctcggggtgtggccgcggaagggacacg
cagaggaagggaggggcccagggagagaagtggtctgcaaggggtgtggc
cagagttggggcagagtctcagaatgtggagccagagagagaaggagcca
gggtggacagggagcacagaaaagacttcacccagcttcctcctcacaaa
gtctccctccacagttacctgtcacacctggagcgcatatcagaggacag
ctacatccccactgcgcaagacgtgctgcgcagtcgcatgcccaccacag
gcatcaatgagtactgcttctccgtgaagaaaaccaaactgcggtgagca
ctaaacagaggcctggcctggggagtccttgtataggagctgagttttct
ggtcctgtccttcacggaaggaaaagtccgacactgacccctctatgcgc
tatgtgggctagcctgagaccttgatggacagaatgaggtaccacaactg
gagagcagatattcctggagaatggcattgttatgatgttggaggatgaa
ccgaagttctttagtttctagtgctcaaaaggatgccgcgggggaagtga
ggacagattgtatggtcatcacagggatgcagggatggctctgggctgag
ggagtgtttagtgaatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_80807495_80808046
seq2: B6Ng01-207P07.b_45_596

seq1  GAATTCCAGGCTAGCCTTGGCTACATGAGACATTGTCACAAAACAAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTAGCCTTGGCTACATGAGACATTGTCACAAAACAAAACT  50

seq1  CAGATGAACTTAATCCTTCCTCAGTTGATAAGTGGAGGTGCTCCCCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAACTTAATCCTTCCTCAGTTGATAAGTGGAGGTGCTCCCCTCTC  100

seq1  TCCCGGGGCTGTGGGAGGCTGTCTTCGACTCTGGCAGTCCTTGACTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGGGCTGTGGGAGGCTGTCTTCGACTCTGGCAGTCCTTGACTGGCC  150

seq1  TTGGCCCACAGGCCTGTTGTGCAGTTTCTGCCTCTGTTGTCACTAAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCACAGGCCTGTTGTGCAGTTTCTGCCTCTGTTGTCACTAAGCCC  200

seq1  GCTCCTAGGCCTGTGTTAACTTTCCTGTTCTCAAAATGATACTCGCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTAGGCCTGTGTTAACTTTCCTGTTCTCAAAATGATACTCGCTGCT  250

seq1  GGCATAGTGCCCACTCTACCCCAACATGACCTCACTCAAGTTAATCTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGTGCCCACTCTACCCCAACATGACCTCACTCAAGTTAATCTCAC  300

seq1  TGTTTTCCTCCTGATTCCCAATAAGGCCATGCCTGGGGGTTCTGGGGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCTCCTGATTCCCAATAAGGCCATGCCTGGGGGTTCTGGGGTGA  350

seq1  GGACAGGAGCACATTTGGGGGGATACAATTCCTTGGCACAGCATATGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGAGCACATTTGGGGGGATACAATTCCTTGGCACAGCATATGTGT  400

seq1  GCTGGATTGGGAAGTTTTACAAGATATTCTATCTCATTAATTAAACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATTGGGAAGTTTTACAAGATATTCTATCTCATTAATTAAACAGAG  450

seq1  TCCCTTGGCAGGGCTCTTCAAGTTTGAGCCAGAGGTATCTTCCACAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGGCAGGGCTCTTCAAGTTTGAGCCAGAGGTATCTTCCACAGTTA  500

seq1  TCTGCCACATCCCACAGCTCCTGCCCTGGGGCAGGGCAGGGGTGGGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACATCCCACAGCTCCTGCCCTGGGGCAGGGCAGGGGTGGGGGGA  550

seq1  GG  552
      ||
seq2  GG  552

seq1: chr10_80974418_80975184
seq2: B6Ng01-207P07.g_68_835 (reverse)

seq1  GGATTCACTCTACACTCCCTCAGCCCAGAGCCATCCCTGCATCCCTGTGA  50
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  GGATTCACTAAACACTCCCTCAGCCCAGAGCCATCCCTGCATCCCTGTGA  50

seq1  TGACCATACAATCTGTCCTCACTTCCCCCGCGGCATCCTTTTGAGCACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATACAATCTGTCCTCACTTCCCCCGCGGCATCCTTTTGAGCACTA  100

seq1  G-AACTAAAGAACTTCGGTTCATCCTCCAACATCATAACAATGCCATTCT  149
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAAAGAACTTCGGTTCATCCTCCAACATCATAACAATGCCATTCT  150

seq1  CCAGGAATATCTGCTCTCCAGTTGTGGTACCTCATTCTGTCCATCAAGGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAATATCTGCTCTCCAGTTGTGGTACCTCATTCTGTCCATCAAGGT  200

seq1  CTCAGGCTAGCCCACATAGCGCATAGAGGGGTCAGTGTCGGACTTTTCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTAGCCCACATAGCGCATAGAGGGGTCAGTGTCGGACTTTTCCT  250

seq1  TCCGTGAAGGACAGGACCAGAAAACTCAGCTCCTATACAAGGACTCCCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGAAGGACAGGACCAGAAAACTCAGCTCCTATACAAGGACTCCCCA  300

seq1  GGCCAGGCCTCTGTTTAGTGCTCACCGCAGTTTGGTTTTCTTCACGGAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGCCTCTGTTTAGTGCTCACCGCAGTTTGGTTTTCTTCACGGAGA  350

seq1  AGCAGTACTCATTGATGCCTGTGGTGGGCATGCGACTGCGCAGCACGTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTACTCATTGATGCCTGTGGTGGGCATGCGACTGCGCAGCACGTCT  400

seq1  TGCGCAGTGGGGATGTAGCTGTCCTCTGATATGCGCTCCAGGTGTGACAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAGTGGGGATGTAGCTGTCCTCTGATATGCGCTCCAGGTGTGACAG  450

seq1  GTAACTGTGGAGGGAGACTTTGTGAGGAGGAAGCTGGGTGAAGTCTTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGTGGAGGGAGACTTTGTGAGGAGGAAGCTGGGTGAAGTCTTTTC  500

seq1  TGTGCTCCCTGTCCACCCTGGCTCCTTCTCTCTCTGGCTCCACATTCTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCCTGTCCACCCTGGCTCCTTCTCTCTCTGGCTCCACATTCTGA  550

seq1  GACTCTGCCCCAACTCTGGCCACACCCCTTGCAGACCACTTCTCTCCCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGCCCCAACTCTGGCCACACCCCTTGCAGACCACTTCTCTCCCTG  600

seq1  GGCCCCTCCCTTCCTCTGCGTGTCCCTTCCGCGGCCACACCCCGAGGCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTCCCTTCCTCTGCGTGTCCCTTCCGCGGCCACACCCCGAGGCCA  650

seq1  GGCCCCTGAGACCTTACCCACATGCCCATTGGCCCCGTATCCCTGTGCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTGAGACCTTACCCACATGCCCATTGGCCCCGTATCCCTGTGCTC  700

seq1  CAACTCCATGACCCCTCCGCCCACAAATCCTAGACTCACTACACCGCGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCATGACCCCTCCGCCCACAAATCCTAGACTCACTACACCGCGGA  750

seq1  GTCCAGAAGGTGGAATTC  767
      ||||||||||||||||||
seq2  GTCCAGAAGGTGGAATTC  768