BAC Information

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BAC

Clone NameB6Ng01-208P02
Chromosome10 (Build37)
Map Location 32,380,316 - 32,380,689
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneLOC100040638
Downstream geneEG667761, Trdn, A330019N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208P02.bB6Ng01-208P02.g
ACCGA027688GA027689
length1,0191,144
definitionB6Ng01-208P02.b B6Ng01-208P02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctttgtgtttctctctatttaatttaagattggctatcggcttt
ctggaaactgtcctataatctttaggtatgtcctttcatctttccacgac
ctttataaagaagtgatattatattttatcacagaatatttcatcatcta
atgaaatgatcatgtgttttattttttttattccgtttgtgtatatggtg
gattacagtgacatatattcaaatgttgaaccatccctgcatctctgggg
taaagcttactgggtcatggtgtatgatctttctgatatattcatatatt
taattttcaagtgagagtgtggttcaaagggaacactcttcctttgctgg
taagagtacaaacttgtacagacactatggaatttaattggtggttctta
aacaaattagtactctatatacttcaagattcagctataccacttttggg
tatatacccaaaagatactctgtcttaccacaaggacatttgttcagcta
atttcacaacagcttcattcttattagcaagaaactgaaaataaactaaa
tgtctctcaacaaatgataaatgaattaaaaagaatgtggtgcacaaggg
agtattagcttttaaaaaattatcatcataaaatttataggcaaaaagat
ggaagtagaaataaacaaaacaaaatatcttggatgaggtaacccagact
cagaagaacatatatggtaataattcacttacaacttgatattaaatatt
aagtaaagaagaatcaagatatgatccacagactcagagaggttaagtta
caaggagaggtgtagagggtacacatggatttccctgggaagggaaagca
taataggctttgctggtggacttgtggaaggtaaggatagaaacagagct
taaagtgagaagaagcattttggtgtgtgatgtggaaatctagtggaata
gtaacttcttagaaccctatgagattacctctagtgagggacttctaata
atggagaatacagagcctg

gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgcgtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
tcctgccgtctactcctcttggggtgaatttgcttccttttttctagagc
ttttagatgtgttgtcaagctgcttagtatgttgctctcctcccgttttt
cttgaaggcactcatagctatggagtttccctttctaagaaatgctttcc
atgtgtcccaaaggtttgggtacgtttgtggccttcattttcatcaactc
tcaaaaagtcctttaagtttctttcctttatttccttctggacccaagga
atcattggagaagaggtgtctcagtgcaatggaatgcttgcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_32380316_32380689
seq2: B6Ng01-208P02.g_692_1207 (reverse)

seq1  AAGGCAAGCATTCCAT--CTTGGAGACA----TGCCTGAATAGTTTCACT  44
      ||||||||||||||||  |   ||||||    | |   ||| | ||| ||
seq2  AAGGCAAGCATTCCATTGCACTGAGACACCTCTTCTCCAAT-GATTC-CT  48

seq1  TTGGTC-------------------------------TCATTT---GTAT  60
      | ||||                                | |||   |  |
seq2  TGGGTCCAGAAGGAAATAAAGGAAAGAAACTTAAAGGACTTTTTGAGAGT  98

seq1  TTATTAAAATTCCAGTCTGA---GTAC----TTCATTGTGTCTC-TGG--  100
      | || |||||    | |  |   ||||      | ||| | | | |||  
seq2  TGATGAAAATGAAGGCCACAAACGTACCCAAACCTTTGGGACACATGGAA  148

seq1  ---ATTTCTT--------------------TTTCAG---CTTGAATTAA-  123
         |||||||                    | | ||   ||| ||  || 
seq2  AGCATTTCTTAGAAAGGGAAACTCCATAGCTATGAGTGCCTTCAAGAAAA  198

seq1  ------------TAAAATATTATTGTGTTTGCCAAGAAAT----GAGATT  157
                   || ||| ||    | ||| ||| | ||     || | 
seq2  ACGGGAGGAGAGCAACATACTAAGCAGCTTGACAACACATCTAAAAGCTC  248

seq1  TTGAATAA------CTGATAGATGCTAAGATGATTTTTTTTCGTTACGCC  201
      | ||| ||      |  ||  |  | |||| ||    |   ||  | |  
seq2  TAGAAAAAAGGAAGCAAATTCACCCCAAGAGGA---GTAGACGGCAGGAA  295

seq1  CACCCAGAATCTTGAGCTGTCATTTTAATTGTTTGGAAAGAAGCCGA---  248
       |  || | ||   ||  || |  | ||     |||||| |||  ||   
seq2  TAATCAAACTC---AGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACT  342

seq1  --------AACTTATAAGGCCAGGCATTTGTCCATTTTGTCTAT------  284
              || | |  |  | |||  || || | ||  |   ||      
seq2  ATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAA  392

seq1  ------------TTTTTTTTGTTTCGTT----------------------  300
                   ||   | |  ||  |                      
seq2  GATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCC  442

seq1  TAATTAAGAAAATCTAAAATGAAAAGGGAGACATAACAACAGATTCTGAA  350
      ||||||| ||||||  |||||||||||||||||||||||||||| |||||
seq2  TAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAA  492

seq1  GAAATCCAAAACACCATCAGATCC  374
      ||||||||||||||||||||||||
seq2  GAAATCCAAAACACCATCAGATCC  516


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