BAC Information

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BAC

Clone NameB6Ng01-209H24
Chromosome8 (Build37)10 (Build37)
Map Location 49,116,935 - 49,117,854110,165,240 - 110,165,730
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEnpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2
Downstream geneLOC100040113, Dctd, Odz3, 2900073C17Rik, LOC100039866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209H24.bB6Ng01-209H24.g
ACCGA028100GA028101
length934688
definitionB6Ng01-209H24.b B6Ng01-209H24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,116,935 - 49,117,854)(110,165,240 - 110,165,730)
sequence
gaattccagaagattaagacagggagatctctgagttcaaggtcatctgg
gattaaaggtgtgatggcacacacctttaatctgggctacaccttctgct
ggagacctatataaggacattgtaagaaggaagactctcctttgcctgtt
tgctgtttgggactgaacaactgctagatccttggacttccattcacagc
tactactgaaccattgttggaaattggactgcagactataagccatcaat
aaattcctttactatatagagactgcccataagttctgtgactctagaga
gccctgactagtacagtctttataagtgattctttttatgatatgaagga
gaaagaacaagaagagttgatgtggtcagatgatgaactcaggactttga
taagaaaagatcagggccttgtgtcttgggtgtgggttcaggtgaatagt
ttttaactacagtattgaaggctctggagctatagaagtggtggccctca
tgaccttgtgagaatatagtagcttcctatcttctgaggagtttggagta
agacaggaccttacaggaaagtgtttgtccctcttgggaatctgtcagca
tgtctactggttacaaaacccataagtggggtcaaatgtcagtgcaaccc
gactaaaggaggaagggctggcaccaagcaggtcaggctggggctaacac
actccaggctggaaccggtgagtatgtttgattgataatcattgccagtg
ttggaatgtcagaattggaaggagactgtcttagctccctagtaggagtc
cccaggaagcaggtaatagcacactgcttaatattaactctgcaatttag
aaaaatgtaattggattgaatgaagttgaagtccagattagaggctttca
aggcctctgagaaaaagaaatgaaattgttgaga

gaattcaaaagttgtcagtaacctttgttatttcataattatagtgacag
ccagtagagaaggttatcttggtttatgtcaagtgcagattctttgctct
ttgtccctatacatacatacatgtgctggtttgtatatgcttggccaagg
gggtggcactattagaagctgtggcccggttggagtaggtgtatcactgt
gggcatgggcttcaagaccctcatcctagctgccaggaagtcagtattct
gctagcagccttcagatgaagatgtagaactctcagctctgcctgtacca
tgcctgcctggatgctgccaagctcccgccttgatgataatggagccttt
gaacctgtaagccagccccaatgaaatgttgtccttagaagagctacctt
tgttgtgcatagccctggggctaattatatttgatgttaatttcattctc
ctgtgagtggtcgaaatctaggaatgagtcagcactcaggtgatttcctg
taaacctgcttcccaccttaatttgtaaaataaaggaaagctgatgattg
ggcagataaaaaggaaggtggaaggtgaggggagagtagagggagaaaat
gaaagagaggacacagagggaggaggaagatgaaaaatctgagcagaagc
acctggcctggagaagccccaaggttctaagggggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_49116935_49117854
seq2: B6Ng01-209H24.b_50_983

seq1  GAATTCCAGAAGATTAAGACAGGGAGATCTCTGAGTTCAAGGTCATCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGATTAAGACAGGGAGATCTCTGAGTTCAAGGTCATCTGG  50

seq1  GATTAAAGGTGTGATGGCACACACCTTTAATCTGGGCTACACCTTCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGTGTGATGGCACACACCTTTAATCTGGGCTACACCTTCTGCT  100

seq1  GGAGACCTATATAAGGACATTGTAAGAAGGAAGACTCTCCTTTGCCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCTATATAAGGACATTGTAAGAAGGAAGACTCTCCTTTGCCTGTT  150

seq1  TGCTGTTTGGGACTGAACAACTGCTAGATCCTTGGACTTCCATTCACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTGGGACTGAACAACTGCTAGATCCTTGGACTTCCATTCACAGC  200

seq1  TACTACTGAACCATTGTTGGAAATTGGACTGCAGACTATAAGCCATCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTGAACCATTGTTGGAAATTGGACTGCAGACTATAAGCCATCAAT  250

seq1  AAATTCCTTTACTATATAGAGACTGCCCATAAGTTCTGTGACTCTAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTTTACTATATAGAGACTGCCCATAAGTTCTGTGACTCTAGAGA  300

seq1  GCCCTGACTAGTACAGTCTTTATAAGTGATTCTTTTTATGATATGAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGACTAGTACAGTCTTTATAAGTGATTCTTTTTATGATATGAAGGA  350

seq1  GAAAGAACAAGAAGAGTTGATGTGGTCAGATGATGAACTCAGGACTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACAAGAAGAGTTGATGTGGTCAGATGATGAACTCAGGACTTTGA  400

seq1  TAAGAAAAGATCAGGGCCTTGTGTCTTGGGTGTGGGTTCAGGTGAATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAGATCAGGGCCTTGTGTCTTGGGTGTGGGTTCAGGTGAATAGT  450

seq1  TTTTAACTACAGTATTGAAGGCTCTGGAGCTATAGAAGTGGTGGCCCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTACAGTATTGAAGGCTCTGGAGCTATAGAAGTGGTGGCCCTCA  500

seq1  TGACCTTGTGAGAATATAGTAGCTTCCTATCTTCTGAGGAGTTTGGAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGTGAGAATATAGTAGCTTCCTATCTTCTGAGGAGTTTGGAGTA  550

seq1  AGACAGGACCTTACAGGAAAGTGTTTGTCCCTCTTGGGAATCTGTCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGACCTTACAGGAAAGTGTTTGTCCCTCTTGGGAATCTGTCAGCA  600

seq1  TGTCTACTGGTTACAAAACCCATAAGTGGGGTCAAATGTCAGTGCAACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACTGGTTACAAAACCCATAAGTGGGGTCAAATGTCAGTGCAACCC  650

seq1  GACTAAAGGAGGAAGGGCTGGCACCAAGCAGGTCAGGCTGGGGCTAACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAGGAGGAAGGGCTGGCACCAAGCAGGTCAGGCTGGGGCTAACAC  700

seq1  ACTCCA-GCTGGAACCGGTGAGTATGTTTGATTGATAATCA-TGCCAGTG  748
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  ACTCCAGGCTGGAACCGGTGAGTATGTTTGATTGATAATCATTGCCAGTG  750

seq1  TTGGAATGTCAGAA-TGGAAGGAGACTGTCTTAGCTCCCTAGTAGGAGT-  796
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  TTGGAATGTCAGAATTGGAAGGAGACTGTCTTAGCTCCCTAGTAGGAGTC  800

seq1  CCCAGGAAGCAGGT-ATAGCACACTGCTT-ATA-TAACTCTGCAATTTAG  843
      |||||||||||||| |||||||||||||| ||| ||||||||||||||||
seq2  CCCAGGAAGCAGGTAATAGCACACTGCTTAATATTAACTCTGCAATTTAG  850

seq1  AAAAATGT-AGTGGATTGAATGAAG-TGAAGTCAAGA-TAGAGG-TTTCA  889
      |||||||| | |||||||||||||| ||||||| ||| |||||| |||||
seq2  AAAAATGTAATTGGATTGAATGAAGTTGAAGTCCAGATTAGAGGCTTTCA  900

seq1  AGGCCTCTGAGAAAA--GAATGAAA-TGTTGAGA  920
      |||||||||||||||   ||||||| ||||||||
seq2  AGGCCTCTGAGAAAAAGAAATGAAATTGTTGAGA  934


seq1: chr10_110165240_110165730
seq2: B6Ng01-209H24.g_310_671 (reverse)

seq1  TCTCTTTCATTTTCTCCTTTGTCGTCTTCTCTCCCCTGTCCTGTTGCTTT  50
      ||||||||||||||||      | ||| |||||||||  ||  || |   
seq2  TCTCTTTCATTTTCTC------CCTCTACTCTCCCCTCACC--TTCC---  39

seq1  ATTATATCTTTAATTTTTTTTTACTCTGTTGCATTTAAAATGTTTTGGTT  100
             | ||  ||||| | | | |            |||  |  | ||
seq2  ------ACCTTCCTTTTTATCTGCCC------------AATCATCAGCTT  71

seq1  TTCTTTGTTATTCATCTTCATACATTCATCTAATTTTCCTTTG-TGCATT  149
      | |||| || | ||                 ||||    |  |  |||  
seq2  TCCTTTATTTTACA-----------------AATTAAGGTGGGAAGCAGG  104

seq1  TTTCCATGTTGAAGCACTATCTTTCCTTTCCTTGGTTTCTTTCCCACCCC  199
      ||| || |   || ||              | ||  | ||  | ||  ||
seq2  TTTACAGG--AAATCA--------------CCTGAGTGCTGACTCATTCC  138

seq1  CCTTTACTTTCATCCCTTCACACTCTACTCTGGCAGTATTTTAAAGTGTG  249
         |   ||||  ||  |||||          | || |  | ||| |   
seq2  ---TAGATTTCGACCACTCACA----------GGAGAA--TGAAATTAAC  173

seq1  TGTGTCTGTGTGTATCTGTGTGTCTATGTATGTGTGTCTGTGTGTGTCTG  299
            | |   || |     | ||||| |                    
seq2  ATCAAATATAATTAGCCCCAGGGCTATGCA--------------------  203

seq1  TGTGTCTGTGTATGTGTGTCTTAGTTAGGGTGAAAAGACACCATGACCAA  349
           |     | ||   |||         |  || |||| ||       
seq2  -----CAACAAAGGTAGCTCT---------TCTAAGGACAACA-------  232

seq1  GGCAACTCTATAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATT  399
              | | ||||||||||||||||||||||| |||     ||||||
seq2  --------TTTCATTGGGGCTGGCTTACAGGTTCAAAGG----CTCCATT  270

seq1  ATCATCAAGGCAGGAGCATGGCAGCATCCAGGCAGGCATGGTACAGGAGG  449
      ||||||||||| ||||| |||||||||||||||||||||||||||||  |
seq2  ATCATCAAGGCGGGAGCTTGGCAGCATCCAGGCAGGCATGGTACAGGCAG  320

seq1  GGCTGAGAGTTCTACATCTTCATCTGAAGACTGCTAGTAGAA  491
       |||||||||||||||||||||||||||| ||||||| ||||
seq2  AGCTGAGAGTTCTACATCTTCATCTGAAGGCTGCTAGCAGAA  362


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