BAC Information

Click to search

BAC

Clone NameB6Ng01-209J14
Chromosome10 (Build37)
Map Location 72,608,164 - 72,717,593
singlet/doubletdoublet
Overlap geneLOC432471, LOC544705
Upstream geneLOC100040505, Zwint
Downstream geneLOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209J14.bB6Ng01-209J14.g
ACCGA028175GA028176
length1,0351,100
definitionB6Ng01-209J14.b B6Ng01-209J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,716,574 - 72,717,593)(72,608,164 - 72,609,269)
sequence
gaattcagttgatagaagtttactactatctctgctatagatgggcttga
aaaaggccacagtgtgctacactgcccaggagaatgctattattatctgc
taagaaatcaggtgtactaaaacatcacaagccatagtagcagtgaaaac
gaggtccattcaagaatctgcacagtggacttgagggccaggtgcccata
gccttatctgaaacaggcctttactaatgtagccatagtaagaattttga
gacaaagataatgacatagtgaccttcttctgagtgccattatcctccca
aatgatcatctaggagacaaacctcaaagacttcatcacacgcagaccag
gaggactatgagcgtaaccagagagatgaggcaaaaggccaagaaatggt
gacatcggccaaagcctggaaatggtaaaggaagataaaaccctagggct
tttggaggagggggttggttctggatcatgttaccagtggctcagcctct
ggcttgtgactgatctccatggtgtacttcagcacatatgtggtacactc
gccacaaatcatgagtgctatccttaactgtagtaaaggtatcagcacag
attcaaaagaactatagagtagtagtgatagacctcaagcaatgacttaa
aaacaacaatgatacacagattaaactcaaaattgactctaaagatgcat
gcatggccaaatatcctgaaatccaatcatttctttatatttacaagaaa
atccagaagcagtcatcatgtttctttacttaagaaataagatttattgc
tttctgtagtttgtaagtcagtgaactaagtttgacacaaatgaccagat
attacaattgaatgagcaaatcactattgttgctaaactgaagtaaggta
aaagaaaaaaaagacccacaaactccactcttgctgaattgcctttctgt
ataaccatctgaaaagggaaagctaggggcttataaggaatgaagaagca
agcacattcaatagtggcttttgggtcggttgtgt

gaattcatgattctggtgccaatttccagcagtctataagcaaaccagtt
atgcttacatgtagctatagtctcaggatgtcatagggtgaggcagaagg
ttaagatgttcagttatcatcgtggacaacatgagattctgcctctaaaa
aagtaaataaaacacactttgagtagcactaggaagctattttattccaa
gctacctctgagtcataatttagtttaagttattggattgcatgtgacat
ttaaattaaataagatattaggggttccatttccttaatgagccatcagc
tattcattggatggttctcctgtgctaagccaggcatcccatgtccagaa
aactgtcaggactttggtcccaatgaaagaaaaaaaaaatgaagttaaac
ttaatagcttctaaatattatttatttcataattaaatattatattcact
ttaattataaatgaaacagattaatgaacactcagaatcatattaataaa
ttactatatctaatccatttaaatgtataattgaatgaatttgccttttt
tttcctattatcttctttgttttcttttctctttaacaagctttcattta
tattaaatagcagctgaagggagcagagtaaccatcaaaatataatttta
acaaatgtaagcttaatgtgtttttaaggacataaacactttcagtattt
ataaaattttattttgttgggaaaacatgcttctctccttcctttagatt
atgtatttatggatatttaaatacaagtcactgtgctccacagtttattt
cttattagttaatattttcaaaacatttttggaaccggagttcattggcc
gtgtctcaaaggatacattcacaagcaacaattttctccaccaatagaat
gtttattgcaagagtcaaatatctttttatgattaagaagctaaatgaac
tgctcatatttgaaaagattctcagcttaattaggaatgaaaagaacaca
aactaagcgactgcctcagtagatacttatatagtctcatgtataagcag
cttactcttaaccacatagagggcttcgttcccatcttccagagaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_72716574_72717593
seq2: B6Ng01-209J14.b_49_1083 (reverse)

seq1  ACACAACCGACC--AAAACCACTATTTTATCT-CTT-CCTCTTCATTCCT  46
      ||||||||||||  ||| ||||||||  || | ||| | |||||||||||
seq2  ACACAACCGACCCAAAAGCCACTATTGAATGTGCTTGCTTCTTCATTCCT  50

seq1  TAT-AGCCCCT-GCTTTCCC-TTTCAGAT-GCTATGCAG-AAGGC-ATTC  90
      ||| ||||||| |||||||| |||||||| | ||| ||| ||||| ||||
seq2  TATAAGCCCCTAGCTTTCCCTTTTCAGATGGTTATACAGAAAGGCAATTC  100

seq1  AGC-AGAGTGGAGTTTGTGGGTCTTTTTTT--CTTTACCTTACTTCAGTT  137
      ||| ||||||||||||||||||||||||||   |||||||||||||||||
seq2  AGCAAGAGTGGAGTTTGTGGGTCTTTTTTTTCTTTTACCTTACTTCAGTT  150

seq1  TAGCAACAATAGTGATTTGCTCATTCAATTGT-ATATCTGGTCATTTGTG  186
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGCAACAATAGTGATTTGCTCATTCAATTGTAATATCTGGTCATTTGTG  200

seq1  TCAAACTTAGTTCACTGACTTACAAACTACAGAAAGCAATAAATCTTATT  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTAGTTCACTGACTTACAAACTACAGAAAGCAATAAATCTTATT  250

seq1  TCTTAAGTAAAGAAACATGATGACTGCTTCTGGATTTTCTTGTAAATAT-  285
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTTAAGTAAAGAAACATGATGACTGCTTCTGGATTTTCTTGTAAATATA  300

seq1  AAGAAATGATTGGATTTCAGGATATTTGGCCATGCATGCATCTTTAGAGT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGATTGGATTTCAGGATATTTGGCCATGCATGCATCTTTAGAGT  350

seq1  CAATTTTGAGTTTAATCTGTGTATCATTGTTGTTTTTAAGTCATTGCTTG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGAGTTTAATCTGTGTATCATTGTTGTTTTTAAGTCATTGCTTG  400

seq1  AGGTCTATCACTACTACTCTATAGTTCTTTTGAATCTGTGCTGATACCTT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTATCACTACTACTCTATAGTTCTTTTGAATCTGTGCTGATACCTT  450

seq1  TACTACAGTTAAGGATAGCACTCATGATTTGTGGCGAGTGTACCACATAT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACAGTTAAGGATAGCACTCATGATTTGTGGCGAGTGTACCACATAT  500

seq1  GTGCTGAAGTACACCATGGAGATCAGTCACAAGCCAGAGGCTGAGCCACT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAAGTACACCATGGAGATCAGTCACAAGCCAGAGGCTGAGCCACT  550

seq1  GGTAACATGATCCAGAACCAACCCCCTCCTCCAAAAGCCCTAGGGTTTTA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACATGATCCAGAACCAACCCCCTCCTCCAAAAGCCCTAGGGTTTTA  600

seq1  TCTTCCTTTACCATTTCCAGGCTTTGGCCGATGTCACCATTTCTTGGCCT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTACCATTTCCAGGCTTTGGCCGATGTCACCATTTCTTGGCCT  650

seq1  TTTGCCTCATCTCTCTGGTTACGCTCATAGTCCTCCTGGTCTGCGTGTGA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCATCTCTCTGGTTACGCTCATAGTCCTCCTGGTCTGCGTGTGA  700

seq1  TGAAGTCTTTGAGGTTTGTCTCCTAGATGATCATTTGGGAGGATAATGGC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTTTGAGGTTTGTCTCCTAGATGATCATTTGGGAGGATAATGGC  750

seq1  ACTCAGAAGAAGGTCACTATGTCATTATCTTTGTCTCAAAATTCTTACTA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAGAAGGTCACTATGTCATTATCTTTGTCTCAAAATTCTTACTA  800

seq1  TGGCTACATTAGTAAAGGCCTGTTTCAGATAAGGCTATGGGCACCTGGCC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACATTAGTAAAGGCCTGTTTCAGATAAGGCTATGGGCACCTGGCC  850

seq1  CTCAAGTCCACTGTGCAGATTCTTGAATGGACCTCGTTTTCACTGCTACT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTCCACTGTGCAGATTCTTGAATGGACCTCGTTTTCACTGCTACT  900

seq1  ATGGCTTGTGATGTTTTAGTACACCTGATTTCTTAGCAGATAATAATAGC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGTGATGTTTTAGTACACCTGATTTCTTAGCAGATAATAATAGC  950

seq1  ATTCTCCTGGGCAGTGTAGCACACTGTGGCCTTTTTCAAGCCCATCTATA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTGGGCAGTGTAGCACACTGTGGCCTTTTTCAAGCCCATCTATA  1000

seq1  GCAGAGATAGTAGTAAACTTCTATCAACTGAATTC  1020
      |||||||||||||||||||||||||||||||||||
seq2  GCAGAGATAGTAGTAAACTTCTATCAACTGAATTC  1035


seq1: chr10_72608164_72609269
seq2: B6Ng01-209J14.g_67_1166

seq1  GAATTCATGATTCTGGTGCCAATTTCCAGCAGTCTATAAGCAAACCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATTCTGGTGCCAATTTCCAGCAGTCTATAAGCAAACCAGTT  50

seq1  ATGCTTACATGTAGCTATAGTCTCAGGATGTCATAGGGTGAGGCAGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTACATGTAGCTATAGTCTCAGGATGTCATAGGGTGAGGCAGAAGG  100

seq1  TTAAGATGTTCAGTTATCATCGTGGACAACATGAGATTCTGCCTCTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATGTTCAGTTATCATCGTGGACAACATGAGATTCTGCCTCTAAAA  150

seq1  AAGTAAATAAAACACACTTTGAGTAGCACTAGGAAGCTATTTTATTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATAAAACACACTTTGAGTAGCACTAGGAAGCTATTTTATTCCAA  200

seq1  GCTACCTCTGAGTCATAATTTAGTTTAAGTTATTGGATTGCATGTGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTCTGAGTCATAATTTAGTTTAAGTTATTGGATTGCATGTGACAT  250

seq1  TTAAATTAAATAAGATATTAGGGGTTCCATTTCCTTAATGAGCCATCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAAATAAGATATTAGGGGTTCCATTTCCTTAATGAGCCATCAGC  300

seq1  TATTCATTGGATGGTTCTCCTGTGCTAAGCCAGGCATCCCATGTCCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTGGATGGTTCTCCTGTGCTAAGCCAGGCATCCCATGTCCAGAA  350

seq1  AACTGTCAGGACTTTGGTCCCAATGAAAGAAAAAAAAAATGAAGTTAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCAGGACTTTGGTCCCAATGAAAGAAAAAAAAAATGAAGTTAAAC  400

seq1  TTAATAGCTTCTAAATATTATTTATTTCATAATTAAATATTATATTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGCTTCTAAATATTATTTATTTCATAATTAAATATTATATTCACT  450

seq1  TTAATTATAAATGAAACAGATTAATGAACACTCAGAATCATATTAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATAAATGAAACAGATTAATGAACACTCAGAATCATATTAATAAA  500

seq1  TTACTATATCTAATCCATTTAAATGTATAATTGAATGAATTTGCCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATATCTAATCCATTTAAATGTATAATTGAATGAATTTGCCTTTTT  550

seq1  TTTCCTATTATCTTCTTTGTTTTCTTTTCTCTTTAACAAGCTTTCATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATTATCTTCTTTGTTTTCTTTTCTCTTTAACAAGCTTTCATTTA  600

seq1  TATTAAATAGCAGCTGAAGGGAGCAGAGTAACCATCAAAATATAATTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATAGCAGCTGAAGGGAGCAGAGTAACCATCAAAATATAATTTTA  650

seq1  ACAAATGTAAGCTTAATGTGTTTTTAAGGACATAAACACTTTCAGTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTAAGCTTAATGTGTTTTTAAGGACATAAACACTTTCAGTATTT  700

seq1  ATAAAATTTTATTTTGTTGGGAAAACATGCTTCTCTCCTTCCTTTAGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTTTATTTTGTTGGGAAAACATGCTTCTCTCCTTCCTTTAGATT  750

seq1  ATGTATTTATGGATATTTAAATACAAGTCACTGTGCTCCACAGTTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTATGGATATTTAAATACAAGTCACTGTGCTCCACAGTTTATTT  800

seq1  CTTATTAGTTAATATTTTCAAAACATTTTTGGAACCGGAGTTCATTGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAGTTAATATTTTCAAAACATTTTTGGAACCGGAGTTCATTGGCC  850

seq1  GTGTCTCAAAGGATACATTCACAAGCAACAATTTTCTCCACCAATAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCAAAGGATACATTCACAAGCAACAATTTTCTCCACCAATAGAAT  900

seq1  GTTTATTGCAAGAGTCAAATATCTTTTTATGATTAAGAAGCTAAATGAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTGCAAGAGTCAAATATCTTTTTATGATTAAGAAGCTAAATGAAC  950

seq1  TGCTCATATTTGAAAAGATTCTCAGGCTTAATTAGGAATGAAAAG-ACAC  999
      |||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  TGCTCATATTTGAAAAGATTCTCA-GCTTAATTAGGAATGAAAAGAACAC  999

seq1  AAACTAAGCGACTGCCTCAGTAAGATACTTATTATAGTCTCATTGTTATA  1049
      ||||||||||||||||||||| ||||||||| |||||||||||   ||||
seq2  AAACTAAGCGACTGCCTCAGT-AGATACTTA-TATAGTCTCAT--GTATA  1045

seq1  AGCAGCCTTACTCTTACCCACATAGAGGGGCTTCGTTTCCCATC-TCCAG  1098
      ||||| |||||||||| ||||||||| |||||||| |||||||| |||||
seq2  AGCAG-CTTACTCTTAACCACATAGA-GGGCTTCG-TTCCCATCTTCCAG  1092

seq1  AGAATAAA  1106
      ||||||||
seq2  AGAATAAA  1100


| Home | SequenceCutter | Blast | Download |