BAC Information

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BAC

Clone NameB6Ng01-209N04
Chromosome10 (Build37)
Map Location 10,653,816 - 10,789,904
singlet/doubletdoublet
Overlap geneGrm1
Upstream geneLOC100039238, LOC665110, 9130014G24Rik, Rab32, EG382450
Downstream geneShprh, Fbxo30, Epm2a, EG666732, LOC100039343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209N04.bB6Ng01-209N04.g
ACCGA028339GA028340
length4801,121
definitionB6Ng01-209N04.b B6Ng01-209N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,789,419 - 10,789,904)(10,653,816 - 10,654,915)
sequence
agactcggactatataccattacaaatgatgaaccaatgaagagtttcag
gcacagagagaccaggacaatatttttgttttagaaagtggtgctgtgaa
atgtttagagactacagagtatgaaagggactcatggaaacaaggtagga
agatatgattggttggagtacgttctggagaaacacaaccaatttagtta
atagattaattagtcaagagatgttaagagtttcgatataggaagtatcc
atggaaagatacaagagagggtggacttgaaagacctagggtaggtaagt
taggatttggtgcttgaaaagttttgagggtcaaaggaaaagacgtctag
aatgactccaagtatggcattttgtagaaccaagtctgaaataaatgtag
gctggttaagtcttatgcatttatgggaaaatgaagccaagagactctat
agtctcaacatctggagagggagggaggtt
gaattccatctggacacagatgctagagtagagagctgagcttgttcggt
gtctacaggcaacactcagggcagaactcatccactgaaagaatgcagtc
acatagtcagtcatatccctttgtcagttccctgcagtctcatggctggg
tcttaaaggagcattatgggggaaaaaaacctataaaatattgttttctt
caaaactttctaagagacagaaataaaagccaacaccagcttgatagacc
cacatggaccgaagcccagaaaggaagagatgctttccttcactttggca
aagtgtggcatggcaaggaagggatgtctccgtagcagtagccaccagta
cagggaacactgttctcaggaatgtgcgtgctcacttccacagtcattcc
taagcgtgtagcaggagaacccagtggattatggccagacagacaagaga
aatgaacgaggtacaaggacgagcggctggcctcttcatgagtgcacatg
agactctcagacatgcttgtatatgctcagttcccttattagcagacaag
acaagccaggaaggtttaaggtgtcactatatcagccttttgagctttta
actaatgatgacaggatggatttacactgcagctatggtactattttaga
ccatcatgtttcttaaccaggtagtctgcataccccgaggctcacatctg
tcatgtctagtcaagatctcttaaactagaatagaccacctacagaatat
tagaataaatagaacgccattgcttttaaaatgatagacatcaaactgtt
aaaggtaaacactctctcactctctctctcccttttttaaaggtattttt
atagaagtaatgggaaagtgactaatctgagtgccatctgccctgttaca
tatattaagaccagcattttgagttaacactttcaactacgggtgtttgg
cacctttttccctctaaaaagaaaccagtaatcttcctcgaatgcatctc
cctttaagggcctgctttttccatgaggatttagttggtgcacacaccct
cccatgactccagtaagaatgcctaaagtggtcctgtagcgcaaggtgtg
ctctatttttagcccaaaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_10789419_10789904
seq2: B6Ng01-209N04.b_49_534 (reverse)

seq1  AACCTCCCTCCCTCTCCAGATGTTGAGACTATAGAGTCTCTTGGCTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCCTCCCTCTCCAGATGTTGAGACTATAGAGTCTCTTGGCTTCAT  50

seq1  TTTCCCATAAATGCATAAGACTTAACCAGCCTACATTTATTTCAGACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATAAATGCATAAGACTTAACCAGCCTACATTTATTTCAGACTTG  100

seq1  GTTCTACAAAATGCCATACTTGGAGTCATTCTAGACGTCTTTTCCTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACAAAATGCCATACTTGGAGTCATTCTAGACGTCTTTTCCTTTGA  150

seq1  CCCTCAAAACTTTTCAAGCACCAAATCCTAACTTACCTACCCTAGGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAAACTTTTCAAGCACCAAATCCTAACTTACCTACCCTAGGTCTT  200

seq1  TCAAGTCCACCCTCTCTTGTATCTTTCCATGGATACTTCCTATATCGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCCACCCTCTCTTGTATCTTTCCATGGATACTTCCTATATCGAAA  250

seq1  CTCTTAACATCTCTTGACTAATTAATCTATTAACTAAATTGGTTGTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACATCTCTTGACTAATTAATCTATTAACTAAATTGGTTGTGTTT  300

seq1  CTCCAGAACGTACTCCAACCAATCATATCTTCCTACCTTGTTTCCATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAACGTACTCCAACCAATCATATCTTCCTACCTTGTTTCCATGAG  350

seq1  TCCCTTTCATACTCTGTAGTCTCTAAACATTTCACAGCACCACTTTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCATACTCTGTAGTCTCTAAACATTTCACAGCACCACTTTCTAA  400

seq1  AACAAAAATATTGTCCTGGTCTCTCTGTGCCTGAAACTCTTCATTGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATATTGTCCTGGTCTCTCTGTGCCTGAAACTCTTCATTGGTTC  450

seq1  ATCATTTGTAATGGTATATAGTCCGAGTCTGAATTC  486
      ||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGTAATGGTATATAGTCCGAGTCTGAATTC  486

seq1: chr10_10653816_10654915
seq2: B6Ng01-209N04.g_67_1187

seq1  GAATTCCATCTGGACACAGATGCTAGAGTAGAGAGCTGAGCTTGTTCGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTGGACACAGATGCTAGAGTAGAGAGCTGAGCTTGTTCGGT  50

seq1  GTCTACAGGCAACACTCAGGGCAGAACTCATCCACTGAAAGAATGCAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGGCAACACTCAGGGCAGAACTCATCCACTGAAAGAATGCAGTC  100

seq1  ACATAGTCAGTCATATCCCTTTGTCAGTTCCCTGCAGTCTCATGGCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTCAGTCATATCCCTTTGTCAGTTCCCTGCAGTCTCATGGCTGGG  150

seq1  TCTTAAAGGAGCATTATGGGGGAAAAAAACCTATAAAATATTGTTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAGGAGCATTATGGGGGAAAAAAACCTATAAAATATTGTTTTCTT  200

seq1  CAAAACTTTCTAAGAGACAGAAATAAAAGCCAACACCAGCTTGATAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTTCTAAGAGACAGAAATAAAAGCCAACACCAGCTTGATAGACC  250

seq1  CACATGGACCGAAGCCCAGAAAGGAAGAGATGCTTTCCTTCACTTTGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGACCGAAGCCCAGAAAGGAAGAGATGCTTTCCTTCACTTTGGCA  300

seq1  AAGTGTGGCATGGCAAGGAAGGGATGTCTCCGTAGCAGTAGCCACCAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGCATGGCAAGGAAGGGATGTCTCCGTAGCAGTAGCCACCAGTA  350

seq1  CAGGGAACACTGTTCTCAGGAATGTGCGTGCTCACTTCCACAGTCATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAACACTGTTCTCAGGAATGTGCGTGCTCACTTCCACAGTCATTCC  400

seq1  TAAGCGTGTAGCAGGAGAACCCAGTGGATTATGGCCAGACAGACAAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCGTGTAGCAGGAGAACCCAGTGGATTATGGCCAGACAGACAAGAGA  450

seq1  AATGAACGAGGTACAAGGACGAGCGGCTGGCCTCTTCATGAGTGCACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACGAGGTACAAGGACGAGCGGCTGGCCTCTTCATGAGTGCACATG  500

seq1  AGACTCTCAGACATGCTTGTATATGCTCAGTTCCCTTATTAGCAGACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTCAGACATGCTTGTATATGCTCAGTTCCCTTATTAGCAGACAAG  550

seq1  ACAAGCCAGGAAGGTTTAAGGTGTCACTATATCAGCCTTTTGAGCTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCAGGAAGGTTTAAGGTGTCACTATATCAGCCTTTTGAGCTTTTA  600

seq1  ACTAATGATGACAGGATGGATTTACACTGCAGCTATGGTACTATTTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGATGACAGGATGGATTTACACTGCAGCTATGGTACTATTTTAGA  650

seq1  CCATCATGTTTCTTAACCAGGTAGTCTGCATACCCCGAGGCTCACATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATGTTTCTTAACCAGGTAGTCTGCATACCCCGAGGCTCACATCTG  700

seq1  TCATGTCTAGTCAAGATCTCTTAAACTAGAATAGACCACCTACAGAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTAGTCAAGATCTCTTAAACTAGAATAGACCACCTACAGAATAT  750

seq1  TAGAATAAATAGAACGCCATTGCTTTTAAAATGATAGACATCAAACTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAAATAGAACGCCATTGCTTTTAAAATGATAGACATCAAACTGTT  800

seq1  AAAGGTAAACACTCTCTCACTCTCTCTCTCCC-TTTTTAAAGGTA-TTTT  848
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  AAAGGTAAACACTCTCTCACTCTCTCTCTCCCTTTTTTAAAGGTATTTTT  850

seq1  ATAGAAGTAATTGGAAAGTGACT-ATCTGAGTGCCATCTGCCCTGGTACA  897
      ||||||||||| ||||||||||| ||||||||||||||||||||| ||||
seq2  ATAGAAGTAATGGGAAAGTGACTAATCTGAGTGCCATCTGCCCTGTTACA  900

seq1  TATATTAAGACCAGCATTTTGAG-TAACAC-TTCAACAAC-GGTGTTT-G  943
      ||||||||||||||||||||||| |||||| |||||| || ||||||| |
seq2  TATATTAAGACCAGCATTTTGAGTTAACACTTTCAACTACGGGTGTTTGG  950

seq1  CACC-TTTTCCCTCCTAAAAGAAA-CAGTAATCTTCTTCGAATGCATCT-  990
      |||| |||||||||  |||||||| ||||||||||| |||||||||||| 
seq2  CACCTTTTTCCCTCTAAAAAGAAACCAGTAATCTTCCTCGAATGCATCTC  1000

seq1  CCTTTAAGGGCCTGCTTTTT-CATGAGTGTTTTAAGTGGTGCACACACC-  1038
      |||||||||||||||||||| |||||| | ||||  ||||||||||||| 
seq2  CCTTTAAGGGCCTGCTTTTTCCATGAG-GATTTAGTTGGTGCACACACCC  1049

seq1  -TCCATGAC-ACAG-AAGAA-GCC-AAGGTGGTCCTG-AGCGC-ATGTGT  1081
        |||||||  ||| ||||| ||| || ||||||||| ||||| | ||||
seq2  TCCCATGACTCCAGTAAGAATGCCTAAAGTGGTCCTGTAGCGCAAGGTGT  1099

seq1  GCTC-ATTTT--ACCCAAACCC  1100
      |||| |||||   |||||||||
seq2  GCTCTATTTTTAGCCCAAACCC  1121