BAC Information

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BAC

Clone NameB6Ng01-210I19
Chromosome10 (Build37)
Map Location 27,922,461 - 28,052,368
singlet/doubletdoublet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210I19.bB6Ng01-210I19.g
ACCGA028861GA028862
length1,1481,157
definitionB6Ng01-210I19.b B6Ng01-210I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,922,461 - 27,923,624)(28,051,211 - 28,052,368)
sequence
gaattccctggcacaggtcttagaggttaatgacttcttcagcatgtatc
ttcatataaattagtgcatatggactcagttacctgataaaaggaatata
ttatacctaattgatgatatcatggtaggtttcatataaagacattgtta
ataaaagactgtcaaggaacctcaagatgattttggctctgggtctctaa
ttctctacatctctacaatcctagaactttgatgagccaacaggttcttt
aggggtcactggcagagaactctagagaattgtacttagacaattccatt
ttaattttgagacagaaccttactatatagccttgactggtcttgaactc
actacatagatcaaactagccttgaattcacagagatccacctgcttctg
cctcctaagtgctaggattaaaggtgtgtgccaccgcatgccaagggatg
tttctctctacaatactgtatttcaggaatgtgcattttgaatatcatat
accatagaagcctatgcttgtaaaatcactaataggaatatgatatggca
gaattttttccagatctatggtagggttaggactgggagtgaagcctgat
ggtagagttcttctctcgcatatataagatctagcgagcccaccttgttc
tctgcccttccccccacaccccaaaaaatccaattgtacaggatgagagg
tgtgctatgtgttatgtgttgtaagctggaaatacgttgttgcctcagtt
tatcttattccctttgtactccacatggctgctagatgtataattttctc
agtgtacctcgggataaacttttagggttttaattcaactgtagattgaa
ctgtctgatttccttctatggcatcagagacctttcgtgttaagttattt
ctacctgactcctccatacatttcatagctgtattcagaacagttttgga
ccctgacaatgccatgtttcttttcgtgtatattactttctcttctttcc
tgtttgcaatctcagttttcatgcactgtgtttttcgctctagtacaaag
aagctgggctcaggagagatgtcagccagtattcggttgatgagaggagg
gtcatagaaagataatgcattctcttggacatcttgaaagacttcctg

gaattcactagaacggagcgaaactgaaagacaatgtggtcttatatgag
ggaaaaaaggtttcaggagagaaagacagttaattcatgagcacggaatt
gggagtgaaggtgagagggggccctcacaggcacatgattctttcttcaa
gcaaatgtatttagtatgaatgtcatcacatctccattggtttgagacat
gaacaggggtgagtttggtaagaaatagaaaacagaatataaacagttaa
ataatgtttcatggaggcaccgagacacagggctggcctgtaagcatgga
aggccatgctaggaccttaagctgtcctagtccccaactcttccgaaagt
cacagagatcagaagccccccacacacacaacatgaatattataggtgta
taatatcacttttatgatcaaatttaaatagtagtatatggtcatcatga
ctattattgtagtatctatatgcaatggcagtgaagttagatcctgggag
aataagtttgatttgcttgaataatgtttcaaggagagtaagtattcaaa
gaaaacataatactggcttcttaaaacatattttaacaaataaagcacag
gatcccaaacggctaatcattgtagctatttcagtttgtggttgtcggaa
ccaattcaaggatttcaacttctcaagacacagcttagtgctacttctta
atactctaactttcctcgttccccttaaatgtgactttaagcaagattac
tacacccttgagaaaaacttatttgtttaattaaaatgaggtttattcag
gacaataaatttaggcctggattcaaaagaaggcgcaatgattggctctt
tatcaaagaggggaaaagggtagttttctttctagtaacctcattttctc
tactaagtaccgtctgtgcctcattaacagaagcttcaagagatttctgc
gctcgtgtttctttccctcctaagtcagaatcagcattatcacttccaca
gtcctcaccttggaagctcttctgtccagtcaggggaaacaaatcccaac
aggttaaatattgtagctggctgaagctgatcttcggtcagagcctaaat
gccttgggtgtcaggtgattgactggggccttccagagagagagcataga
gccacgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_27922461_27923624
seq2: B6Ng01-210I19.b_33_1180

seq1  GAATTCCCTGGCACAGGTCTTAGAGGTTAATGACTTCTTCAGCATGTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGCACAGGTCTTAGAGGTTAATGACTTCTTCAGCATGTATC  50

seq1  TTCATATAAATTAGTGCATATGGACTCAGTTACCTGATAAAAGGAATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATAAATTAGTGCATATGGACTCAGTTACCTGATAAAAGGAATATA  100

seq1  TTATACCTAATTGATGATATCATGGTAGGTTTCATATAAAGACATTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCTAATTGATGATATCATGGTAGGTTTCATATAAAGACATTGTTA  150

seq1  ATAAAAGACTGTCAAGGAACCTCAAGATGATTTTGGCTCTGGGTCTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGACTGTCAAGGAACCTCAAGATGATTTTGGCTCTGGGTCTCTAA  200

seq1  TTCTCTACATCTCTACAATCCTAGAACTTTGATGAGCCAACAGGTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACATCTCTACAATCCTAGAACTTTGATGAGCCAACAGGTTCTTT  250

seq1  AGGGGTCACTGGCAGAGAACTCTAGAGAATTGTACTTAGACAATTCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCACTGGCAGAGAACTCTAGAGAATTGTACTTAGACAATTCCATT  300

seq1  TTAATTTTGAGACAGAACCTTACTATATAGCCTTGACTGGTCTTGAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTGAGACAGAACCTTACTATATAGCCTTGACTGGTCTTGAACTC  350

seq1  ACTACATAGATCAAACTAGCCTTGAATTCACAGAGATCCACCTGCTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACATAGATCAAACTAGCCTTGAATTCACAGAGATCCACCTGCTTCTG  400

seq1  CCTCCTAAGTGCTAGGATTAAAGGTGTGTGCCACCGCATGCCAAGGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAAGTGCTAGGATTAAAGGTGTGTGCCACCGCATGCCAAGGGATG  450

seq1  TTTCTCTCTACAATACTGTATTTCAGGAATGTGCATTTTGAATATCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTACAATACTGTATTTCAGGAATGTGCATTTTGAATATCATAT  500

seq1  ACCATAGAAGCCTATGCTTGTAAAATCACTAATAGGAATATGATATGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGAAGCCTATGCTTGTAAAATCACTAATAGGAATATGATATGGCA  550

seq1  GAATTTTTTCCAGATCTATGGTAGGGTTAGGACTGGGAGTGAAGCCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTTCCAGATCTATGGTAGGGTTAGGACTGGGAGTGAAGCCTGAT  600

seq1  GGTAGAGTTCTTCTCTCGCATATATAAGATCTAGCGAGCCCACCTTGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGTTCTTCTCTCGCATATATAAGATCTAGCGAGCCCACCTTGTTC  650

seq1  TCTGCCCTTCCCCCCACACCCCAAAAAATCCAATTGTACAGGATGAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTTCCCCCCACACCCCAAAAAATCCAATTGTACAGGATGAGAGG  700

seq1  TGTGCTATGTGTTATGTGTTGTAAGCTGGAAATACGTTGTTGCCTCAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTATGTGTTATGTGTTGTAAGCTGGAAATACGTTGTTGCCTCAGTT  750

seq1  TATCTTATTCCCTTTGTACTCCACATGGCTGCTAGATGTATAATTTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTATTCCCTTTGTACTCCACATGGCTGCTAGATGTATAATTTTCTC  800

seq1  AGTGTACCTCGGGATAAACTTTTAGGGTTTTAATTCAACTGTAGATTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACCTCGGGATAAACTTTTAGGGTTTTAATTCAACTGTAGATTGAA  850

seq1  CTGTCTGATTTCCTTCTATGGCATCAGAGACCTTTCGTGTTAAGTTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGATTTCCTTCTATGGCATCAGAGACCTTTCGTGTTAAGTTATTT  900

seq1  CTACCTGACTCCTCCATACATTTCATAGCTGTTATTCAGAAACAGTTTTG  950
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  CTACCTGACTCCTCCATACATTTCATAGCTG-TATTCAG-AACAGTTTTG  948

seq1  GACCCTGACAATGCCATGTTTCTTTTCGTGTATATTACTTTTCTCTTCTT  1000
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  GACCCTGACAATGCCATGTTTCTTTTCGTGTATATTAC-TTTCTCTTC-T  996

seq1  TTCCTGTTTGCAATCTCAGTTTTCATGCACTGTTGTTTTTCGCTTCTAAG  1050
      |||||||||||||||||||||||||||||||| |||||||||| ||| ||
seq2  TTCCTGTTTGCAATCTCAGTTTTCATGCACTG-TGTTTTTCGC-TCT-AG  1043

seq1  TACAAAGAAGCTGGGCTCAGGAGAAGATGTCAGCAGGTATTTCCGTTGGA  1100
      ||||||||||||||||||||||| ||||||||||  ||| ||| ||||  
seq2  TACAAAGAAGCTGGGCTCAGGAG-AGATGTCAGCCAGTA-TTCGGTTG--  1089

seq1  ATGGAAGAGGA-GGTCATTAGAAAAGAATAGTGCATTCTCCTTGGACATC  1149
      |||  |||||| ||||| ||||||   ||| |||||||| ||||||||||
seq2  ATG--AGAGGAGGGTCA-TAGAAA--GATAATGCATTCT-CTTGGACATC  1133

seq1  TTGAAAGACATCCTG  1164
      ||||||||| |||||
seq2  TTGAAAGACTTCCTG  1148


seq1: chr10_28051211_28052368
seq2: B6Ng01-210I19.g_65_1221 (reverse)

seq1  GCGTGGCTTCTATTGCTCTCCTCTTCCTGGAA-GCCCCAGTCAACCACTT  49
      ||||||| |||| |||||| ||||  |||||| ||||||||||| ||| |
seq2  GCGTGGC-TCTA-TGCTCT-CTCT--CTGGAAGGCCCCAGTCAATCACCT  45

seq1  GACACCCA--GCATT--AGCTCTGACCCGAAGATCAGCCTCAGCAAGCTA  95
      ||||||||  |||||   ||||||| |||||||||||| ||||| |||||
seq2  GACACCCAAGGCATTTAGGCTCTGA-CCGAAGATCAGCTTCAGCCAGCTA  94

seq1  C-ATAATTAAACTGTTGGGATTTGTTTCCCCTGACTGGACAGAAGAGCCT  144
      | ||| |||| |||||||||||||||||||||||||||||||||||| ||
seq2  CAATATTTAACCTGTTGGGATTTGTTTCCCCTGACTGGACAGAAGAG-CT  143

seq1  CCCAAGGTGAGGACTGT-GAAGTGATAATGCTGATTCTGACTTTAGGAGG  193
       |||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  TCCAAGGTGAGGACTGTGGAAGTGATAATGCTGATTCTGAC-TTAGGAGG  192

seq1  G-AAGGAACACGAGCGCAGAAATCTCTTGAAGCTTCTGTTAATGAGGCAC  242
      | ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAACACGAGCGCAGAAATCTCTTGAAGCTTCTGTTAATGAGGCAC  242

seq1  AGACGGTACTTAGTAGAGAAAATGAGGTTACTAGAAAGAAAACTTACCCT  292
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGACGGTACTTAGTAGAGAAAATGAGGTTACTAGAAAGAAAAC-TACCCT  291

seq1  TTTCCCCTCTTTGATAAAGAGCCAATCATTGCGCCTTCTTTTGAATCCAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTCTTTGATAAAGAGCCAATCATTGCGCCTTCTTTTGAATCCAG  341

seq1  GCCTAAATTTATTGTCCTGAATAAACCTCATTTTAATTAAACAAATAAGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAATTTATTGTCCTGAATAAACCTCATTTTAATTAAACAAATAAGT  391

seq1  TTTTCTCAAGGGTGTAGTAATCTTGCTTAAAGTCACATTTAAGGGGAACG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCAAGGGTGTAGTAATCTTGCTTAAAGTCACATTTAAGGGGAACG  441

seq1  AGGAAAGTTAGAGTATTAAGAAGTAGCACTAAGCTGTGTCTTGAGAAGTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGTTAGAGTATTAAGAAGTAGCACTAAGCTGTGTCTTGAGAAGTT  491

seq1  GAAATCCTTGAATTGGTTCCGACAACCACAAACTGAAATAGCTACAATGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCTTGAATTGGTTCCGACAACCACAAACTGAAATAGCTACAATGA  541

seq1  TTAGCCGTTTGGGATCCTGTGCTTTATTTGTTAAAATATGTTTTAAGAAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCGTTTGGGATCCTGTGCTTTATTTGTTAAAATATGTTTTAAGAAG  591

seq1  CCAGTATTATGTTTTCTTTGAATACTTACTCTCCTTGAAACATTATTCAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTATGTTTTCTTTGAATACTTACTCTCCTTGAAACATTATTCAA  641

seq1  GCAAATCAAACTTATTCTCCCAGGATCTAACTTCACTGCCATTGCATATA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCAAACTTATTCTCCCAGGATCTAACTTCACTGCCATTGCATATA  691

seq1  GATACTACAATAATAGTCATGATGACCATATACTACTATTTAAATTTGAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTACAATAATAGTCATGATGACCATATACTACTATTTAAATTTGAT  741

seq1  CATAAAAGTGATATTATACACCTATAATATTCATGTTGTGTGTGTGGGGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGTGATATTATACACCTATAATATTCATGTTGTGTGTGTGGGGG  791

seq1  GCTTCTGATCTCTGTGACTTTCGGAAGAGTTGGGGACTAGGACAGCTTAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGATCTCTGTGACTTTCGGAAGAGTTGGGGACTAGGACAGCTTAA  841

seq1  GGTCCTAGCATGGCCTTCCATGCTTACAGGCCAGCCCTGTGTCTCGGTGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTAGCATGGCCTTCCATGCTTACAGGCCAGCCCTGTGTCTCGGTGC  891

seq1  CTCCATGAAACATTATTTAACTGTTTATATTCTGTTTTCTATTTCTTACC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGAAACATTATTTAACTGTTTATATTCTGTTTTCTATTTCTTACC  941

seq1  AAACTCACCCCTGTTCATGTCTCAAACCAATGGAGATGTGATGACATTCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACCCCTGTTCATGTCTCAAACCAATGGAGATGTGATGACATTCA  991

seq1  TACTAAATACATTTGCTTGAAGAAAGAATCATGTGCCTGTGAGGGCCCCC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATACATTTGCTTGAAGAAAGAATCATGTGCCTGTGAGGGCCCCC  1041

seq1  TCTCACCTTCACTCCCAATTCCGTGCTCATGAATTAACTGTCTTTCTCTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTTCACTCCCAATTCCGTGCTCATGAATTAACTGTCTTTCTCTC  1091

seq1  CTGAAACCTTTTTTCCCTCATATAAGACCACATTGTCTTTCAGTTTCGCT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCTTTTTTCCCTCATATAAGACCACATTGTCTTTCAGTTTCGCT  1141

seq1  CCGTTCTAGTGAATTC  1158
      ||||||||||||||||
seq2  CCGTTCTAGTGAATTC  1157


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