BAC Information

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BAC

Clone NameB6Ng01-211B18
Chromosome10 (Build37)
Map Location 113,701,075 - 113,865,291
singlet/doubletdoublet
Overlap geneTrhde
Upstream geneLOC100042655, LOC100042666
Downstream gene4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211B18.bB6Ng01-211B18.g
ACCGA029275GA029276
length354440
definitionB6Ng01-211B18.b B6Ng01-211B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,864,938 - 113,865,291)(113,701,075 - 113,701,513)
sequence
ttatgtttcccactttggtcattgagcatttgtgacctgcaatggaagaa
agtgattctgactgcatgacaacaaggtcctaggagcactaactgtgaca
attctagctttgttcttagcgttccagggggtgagcttaagttcagtgga
ggagaaacagatcctgtaaatgctctaattacttatcctttgccttttcc
ccttttcattggtccttgacattcttgtctttgacactgataagtacttt
tgcaggcagtggaggtcactacgtagtctttctacctttttttgatgctt
atgtgcacacatgtatgtgtgtctgtgtgtgtctgcctcagcttgtgttt
gtgt

aaataatcacaggtttattgtgtttatcctaaaacaactcctattgaaaa
tttccatttatatgagtcaataaatttcctttgttttaggatgaaccctt
ttgatggaaattttccttcttggataaaataagatatgtcattcatatgc
agagaagattacaaaggttgataaaattgcatatatgacagaaatgtaaa
tggagcatttgagtaatcttcacttcaaagaataagccatgttgtccctg
gatatactaaattacggggttgtcttaattcttagaatactcatatgaat
aacctgtgtcttaattgagaaaacctttcctttcttccttccttccttcc
ttccttccttccatacttccttccttccttccttcctccttccttccatc
cttcctccctcctttcttggttccttcttttctcctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_113864938_113865291
seq2: B6Ng01-211B18.b_52_405 (reverse)

seq1  ACACAAACACAAGCTGAGGCAGACACACACAGACACACATACATGTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACACAAGCTGAGGCAGACACACACAGACACACATACATGTGTGC  50

seq1  ACATAAGCATCAAAAAAAGGTAGAAAGACTACGTAGTGACCTCCACTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGCATCAAAAAAAGGTAGAAAGACTACGTAGTGACCTCCACTGCC  100

seq1  TGCAAAAGTACTTATCAGTGTCAAAGACAAGAATGTCAAGGACCAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAGTACTTATCAGTGTCAAAGACAAGAATGTCAAGGACCAATGAA  150

seq1  AAGGGGAAAAGGCAAAGGATAAGTAATTAGAGCATTTACAGGATCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAAAGGCAAAGGATAAGTAATTAGAGCATTTACAGGATCTGTTT  200

seq1  CTCCTCCACTGAACTTAAGCTCACCCCCTGGAACGCTAAGAACAAAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCACTGAACTTAAGCTCACCCCCTGGAACGCTAAGAACAAAGCTA  250

seq1  GAATTGTCACAGTTAGTGCTCCTAGGACCTTGTTGTCATGCAGTCAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTCACAGTTAGTGCTCCTAGGACCTTGTTGTCATGCAGTCAGAAT  300

seq1  CACTTTCTTCCATTGCAGGTCACAAATGCTCAATGACCAAAGTGGGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCTTCCATTGCAGGTCACAAATGCTCAATGACCAAAGTGGGAAAC  350

seq1  ATAA  354
      ||||
seq2  ATAA  354


seq1: chr10_113701075_113701513
seq2: B6Ng01-211B18.g_63_508

seq1  GAATTCAAATAATCACAGGTTTATTGTGTTTATCCTAAAACAACTCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAATCACAGGTTTATTGTGTTTATCCTAAAACAACTCCTAT  50

seq1  TGAAAATTTCCATTTATATGAGTCAATAAATTTCCTTTGTTTTAGGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTTCCATTTATATGAGTCAATAAATTTCCTTTGTTTTAGGATGA  100

seq1  ACCCTTTTGATGGAAATTTTCCTTCTTGGATAAAATAAGATATGTCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTTGATGGAAATTTTCCTTCTTGGATAAAATAAGATATGTCATTC  150

seq1  ATATGCAGAGAAGATTACAAAGGTTGATAAAATTGCATATATGACAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAGAGAAGATTACAAAGGTTGATAAAATTGCATATATGACAGAAA  200

seq1  TGTAAATGGAGCATTTGAGTAATCTTCACTTCAAAGAATAAGCCATGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGGAGCATTTGAGTAATCTTCACTTCAAAGAATAAGCCATGTTG  250

seq1  TCCCTGGATATACTAAATTACGGGGTTGTCTTAATTCTTAGAATACTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGATATACTAAATTACGGGGTTGTCTTAATTCTTAGAATACTCAT  300

seq1  ATGAATAACCTGTGTCTTAATTGAGAAAACCTTTCCTTTCTTCCTTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAACCTGTGTCTTAATTGAGAAAACCTTTCCTTTCTTCCTTCCTT  350

seq1  CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCCTTCCT  400
      |||||||||||||||||| | |||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTCCTTCCATACTTCCTTCCTTCCTTCCTTCCTCCTTCCT  400

seq1  TCCTTCCTTCCTCCTTCCTTCCTTCCTTCCTTCCTTTCT-------  439
      ||| |||||||||| ||||| |||  ||||||| |||||       
seq2  TCCATCCTTCCTCCCTCCTTTCTTGGTTCCTTCTTTTCTCCTTTCT  446


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