BAC Information

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BAC

Clone NameB6Ng01-211N01
Chromosome10 (Build37)
Map Location 31,216,957 - 31,358,035
singlet/doubletdoublet
Overlap geneIbrdc1, LOC666055
Upstream geneTrmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294
Downstream geneLOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211N01.bB6Ng01-211N01.g
ACCGA029772GA029773
length1,1641,184
definitionB6Ng01-211N01.b B6Ng01-211N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,356,866 - 31,358,035)(31,216,957 - 31,218,139)
sequence
gaattccaaggcagccagcgctacacaatgtctcagatagacaaacaaca
aaacgaaacttaaaactaaaactaccatacaggttaaaaagaaagaattt
atttgaccaaagagaataaaataaaaatgcagagatagtctacgtaagac
atgcccttgtctctgctatactggacattagccttaagaaagcaggaatc
acaggtatggaaaacactagaaacattgtccgctaagaaccaagagctct
agatttagatagtaacatggtaatgtaatagacttgataatagaatatat
tattttccatcaactaagcaaacatttcaaagagaatatagtatgttctg
ttctgccttgcaacacaaacatacttattcagtgctccataaagattctc
cttacagtactatccccaaagagttccaatgcctattttctgctttagct
ccattactacgaatgtgtgagtgggtttgccatttatgtgttgaattctc
atttctttagtattgtttttaatttaatgcctaaagctaaagctaaaccc
aagtttgaatcctatcccagataggatttgttgtaaccatggtccatgag
aaaagagtgtataaagagaagactcatcttaccagagttgaacagatttt
gtaggccatggcagagaggccagaggaggatgcctactgtcctgatctgt
cacaactctgtgatgttctctcaagatcaggtctctcactgaacttaaag
cttgtggtttccctagaagcttcgttcccagccaaccctggtacttcttt
tactcccaagtcccaaatccctggtttggtgcagggtcctcgtatttgcg
caacaattctttttgccgacactgagccaactccacagccccaatttttt
tttaagattataattttattctatttggtctacctggattatcttgccac
aaaccaaaagtaattcaaccatacctaagtttttagacagcaagaaaatt
tcttactcacagcacctttgacttctttgttctacaagtgagaatagaaa
gacattccccctatgaatgtaatagaatatctaggatgtaaatattcagt
tgcttttgtatataacttctttttcctactgacctcatcatgtcatgtta
tgccaatgaatagc

gaattcctatcaagaatcaggaaaactgatccagacactctggatccatt
tcagttagtaaacaaaaatgatagatgatacttttaccactagagtcaag
tcacaaagacctttcagcatagtttcattgcatttcagtgaaaagagcta
gtggttaagacaatttattcctcactggccaagacgaggaggtgactgag
gaagtgaaaagaaggattgtctggaaaacaataggcaaggggggttgaga
tacaggagtactgctgtacacaaggagaaactgtggtagcatacagctca
gaactgaaaaacaaacattattgtcaatgctaatgagtctacataaccca
ataaatcaatgaagtatttttaagagacataaagaaatagctctcaaaag
gcattggtaatattgcatgtatctttcaaagatgttttctgcattttaag
tcattattctcaaaacagtccctttttcagtcaaaagaaaaaatataatt
tctaatatgcatgattacatgcttgtacaactgacaacatgaacaaggat
gcgtaaggtatatacaaaggtatgctttaatcagcagatagataataaca
atagtctcacactactgggcctttgttgggtctggataacatcaactaaa
gctgcagattcaaagagtgatgatgcatacaagtcccacacagcacatgg
ctttgaaatcagtcttagttgtccactcaaaggaagagacacagtggagt
cccatccattgatttgctttcaaaaagtaaaatcaccgtcttaaataccc
tttcaagtttggagtgcttgtttcattttgataatactatttctgtgtat
gtatcttagttttattgataggatcattgtagagccacatggtagtatgt
cattttgggaagttagtgtctataactgtagaaagtgtacaattaaatta
taatttgaaaaaaaaatgtgctccagctattttatttattgtgtttctag
taagaaaattcttgtatagaattcatagactatgaaatacagttaatact
atttaaacttttcactagaactatattttaaaccaggattcagtgaaagt
aatcacatagcagcattattagctgtgagctcttaacagtcaattgttgc
aacatgttctcagacctatctcttaaaatttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_31356866_31358035
seq2: B6Ng01-211N01.b_45_1208 (reverse)

seq1  GCTATTCTATTGCAATAACATGACAATGAATGAAGTCAGTTAAGAAAAAG  50
      ||||||| ||||  |||||||||| ||| |||| ||||| || |||||||
seq2  GCTATTC-ATTGGCATAACATGAC-ATG-ATGAGGTCAG-TAGGAAAAAG  46

seq1  -AGTAATATACAAAAGCAAACTTGAATATTTACATCCTAGATA-TCTATA  98
       ||| ||||||||||||||   ||||||||||||||||||||| ||||| 
seq2  AAGTTATATACAAAAGCAA--CTGAATATTTACATCCTAGATATTCTATT  94

seq1  ACATTCATAGGGGGAAATGTCTTTTCTA-TCTCACTTGGTAG-ACAAAGA  146
      |||||||||||||| |||||| |||||| |||||||| |||| |||||||
seq2  ACATTCATAGGGGG-AATGTC-TTTCTATTCTCACTT-GTAGAACAAAGA  141

seq1  AGTC-AAGGTGCTGTTGAGTAAGAAATTTTCTTGCTGTTCTAAAAACTTA  195
      |||| ||||||||| |||||||||||||||||||||| ||||||||||||
seq2  AGTCAAAGGTGCTG-TGAGTAAGAAATTTTCTTGCTG-TCTAAAAACTTA  189

seq1  GGTATGGTTGAATTACTTTTGGTTTGTGGCAAGATAATCCAGGTAGACCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGTTGAATTACTTTTGGTTTGTGGCAAGATAATCCAGGTAGACCA  239

seq1  AATAGAATAAAATTATAATCTTAAAAAAAAATTGGGGCTGTGGAGTTGGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATAAAATTATAATCTTAAAAAAAAATTGGGGCTGTGGAGTTGGC  289

seq1  TCAGTGTCGGCAAAAAGAATTGTTGCGCAAATACGAGGACCCTGCACCAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCGGCAAAAAGAATTGTTGCGCAAATACGAGGACCCTGCACCAA  339

seq1  ACCAGGGATTTGGGACTTGGGAGTAAAAGAAGTACCAGGGTTGGCTGGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGATTTGGGACTTGGGAGTAAAAGAAGTACCAGGGTTGGCTGGGA  389

seq1  ACGAAGCTTCTAGGGAAACCACAAGCTTTAAGTTCAGTGAGAGACCTGAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGCTTCTAGGGAAACCACAAGCTTTAAGTTCAGTGAGAGACCTGAT  439

seq1  CTTGAGAGAACATCACAGAGTTGTGACAGATCAGGACAGTAGGCATCCTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAGAACATCACAGAGTTGTGACAGATCAGGACAGTAGGCATCCTC  489

seq1  CTCTGGCCTCTCTGCCATGGCCTACAAAATCTGTTCAACTCTGGTAAGAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCTCTCTGCCATGGCCTACAAAATCTGTTCAACTCTGGTAAGAT  539

seq1  GAGTCTTCTCTTTATACACTCTTTTCTCATGGACCATGGTTACAACAAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTCTCTTTATACACTCTTTTCTCATGGACCATGGTTACAACAAAT  589

seq1  CCTATCTGGGATAGGATTCAAACTTGGGTTTAGCTTTAGCTTTAGGCATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTGGGATAGGATTCAAACTTGGGTTTAGCTTTAGCTTTAGGCATT  639

seq1  AAATTAAAAACAATACTAAAGAAATGAGAATTCAACACATAAATGGCAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAACAATACTAAAGAAATGAGAATTCAACACATAAATGGCAAA  689

seq1  CCCACTCACACATTCGTAGTAATGGAGCTAAAGCAGAAAATAGGCATTGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCACACATTCGTAGTAATGGAGCTAAAGCAGAAAATAGGCATTGG  739

seq1  AACTCTTTGGGGATAGTACTGTAAGGAGAATCTTTATGGAGCACTGAATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTGGGGATAGTACTGTAAGGAGAATCTTTATGGAGCACTGAATA  789

seq1  AGTATGTTTGTGTTGCAAGGCAGAACAGAACATACTATATTCTCTTTGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTTTGTGTTGCAAGGCAGAACAGAACATACTATATTCTCTTTGAA  839

seq1  ATGTTTGCTTAGTTGATGGAAAATAATATATTCTATTATCAAGTCTATTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGCTTAGTTGATGGAAAATAATATATTCTATTATCAAGTCTATTA  889

seq1  CATTACCATGTTACTATCTAAATCTAGAGCTCTTGGTTCTTAGCGGACAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCATGTTACTATCTAAATCTAGAGCTCTTGGTTCTTAGCGGACAA  939

seq1  TGTTTCTAGTGTTTTCCATACCTGTGATTCCTGCTTTCTTAAGGCTAATG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTAGTGTTTTCCATACCTGTGATTCCTGCTTTCTTAAGGCTAATG  989

seq1  TCCAGTATAGCAGAGACAAGGGCATGTCTTACGTAGACTATCTCTGCATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTATAGCAGAGACAAGGGCATGTCTTACGTAGACTATCTCTGCATT  1039

seq1  TTTATTTTATTCTCTTTGGTCAAATAAATTCTTTCTTTTTAACCTGTATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATTCTCTTTGGTCAAATAAATTCTTTCTTTTTAACCTGTATG  1089

seq1  GTAGTTTTAGTTTTAAGTTTCGTTTTGTTGTTTGTCTATCTGAGACATTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTTAGTTTTAAGTTTCGTTTTGTTGTTTGTCTATCTGAGACATTG  1139

seq1  TGTAGCGCTGGCTGCCTTGGAATTC  1170
      |||||||||||||||||||||||||
seq2  TGTAGCGCTGGCTGCCTTGGAATTC  1164


seq1: chr10_31216957_31218139
seq2: B6Ng01-211N01.g_64_1247

seq1  GAATTCCTATCAAGAATCAGGAAAACTGATCCAGACACTCTGGATCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCAAGAATCAGGAAAACTGATCCAGACACTCTGGATCCATT  50

seq1  TCAGTTAGTAAACAAAAATGATAGATGATACTTTTACCACTAGAGTCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAGTAAACAAAAATGATAGATGATACTTTTACCACTAGAGTCAAG  100

seq1  TCACAAAGACCTTTCAGCATAGTTTCATTGCATTTCAGTGAAAAGAGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGACCTTTCAGCATAGTTTCATTGCATTTCAGTGAAAAGAGCTA  150

seq1  GTGGTTAAGACAATTTATTCCTCACTGGCCAAGACGAGGAGGTGACTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAAGACAATTTATTCCTCACTGGCCAAGACGAGGAGGTGACTGAG  200

seq1  GAAGTGAAAAGAAGGATTGTCTGGAAAACAATAGGCAAGGGGGGTTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAAAAGAAGGATTGTCTGGAAAACAATAGGCAAGGGGGGTTGAGA  250

seq1  TACAGGAGTACTGCTGTACACAAGGAGAAACTGTGGTAGCATACAGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGTACTGCTGTACACAAGGAGAAACTGTGGTAGCATACAGCTCA  300

seq1  GAACTGAAAAACAAACATTATTGTCAATGCTAATGAGTCTACATAACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAAAAACAAACATTATTGTCAATGCTAATGAGTCTACATAACCCA  350

seq1  ATAAATCAATGAAGTATTTTTAAGAGACATAAAGAAATAGCTCTCAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCAATGAAGTATTTTTAAGAGACATAAAGAAATAGCTCTCAAAAG  400

seq1  GCATTGGTAATATTGCATGTATCTTTCAAAGATGTTTTCTGCATTTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGTAATATTGCATGTATCTTTCAAAGATGTTTTCTGCATTTTAAG  450

seq1  TCATTATTCTCAAAACAGTCCCTTTTTCAGTCAAAAGAAAAAATATAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTCTCAAAACAGTCCCTTTTTCAGTCAAAAGAAAAAATATAATT  500

seq1  TCTAATATGCATGATTACATGCTTGTACAACTGACAACATGAACAAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATATGCATGATTACATGCTTGTACAACTGACAACATGAACAAGGAT  550

seq1  GCGTAAGGTATATACAAAGGTATGCTTTAATCAGCAGATAGATAATAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAAGGTATATACAAAGGTATGCTTTAATCAGCAGATAGATAATAACA  600

seq1  ATAGTCTCACACTACTGGGCCTTTGTTGGGTCTGGATAACATCAACTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTCACACTACTGGGCCTTTGTTGGGTCTGGATAACATCAACTAAA  650

seq1  GCTGCAGATTCAAAGAGTGATGATGCATACAAGTCCCACACAGCACATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGATTCAAAGAGTGATGATGCATACAAGTCCCACACAGCACATGG  700

seq1  CTTTGAAATCAGTCTTAGTTGTCCACTCAAAGGAAGAGACACAGTGGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAATCAGTCTTAGTTGTCCACTCAAAGGAAGAGACACAGTGGAGT  750

seq1  CCCATCCATTGATTTGCTTTCAAAAAGTAAAATCACCGTCTTAAATACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCATTGATTTGCTTTCAAAAAGTAAAATCACCGTCTTAAATACCC  800

seq1  TTTCAAGTTTGGAGTGCTTGTTTCATTTTGATAATACTATTTCTGTGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTTTGGAGTGCTTGTTTCATTTTGATAATACTATTTCTGTGTAT  850

seq1  GTATCTTAGTTTTATTGATAGGATCATTGTAGAGCCACATGGTAGTATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTAGTTTTATTGATAGGATCATTGTAGAGCCACATGGTAGTATGT  900

seq1  CATTTT-GGAAGTTAGTGTCTATAACTGTAGAAAAGTGTACAATTAAATT  949
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  CATTTTGGGAAGTTAGTGTCTATAACTGTAG-AAAGTGTACAATTAAATT  949

seq1  ATAATTTG-AAAAAAAATGTGCTCCAGCTATTTTATTTATTGTGTTTCTA  998
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGAAAAAAAAATGTGCTCCAGCTATTTTATTTATTGTGTTTCTA  999

seq1  GTAAGAAAAATTCTTGTATAGAATTCATAGACTATGAAATACAGTTAAAT  1048
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  GTAAG-AAAATTCTTGTATAGAATTCATAGACTATGAAATACAGTT-AAT  1047

seq1  ACTATTAAAAC-TTTCACTAGAAATTAATATTTTAAACAAAGATTCAAGT  1097
      |||||| |||| ||||||||||| |  ||||||||||| | ||||| |||
seq2  ACTATTTAAACTTTTCACTAGAACT--ATATTTTAAACCAGGATTC-AGT  1094

seq1  GAAA-TTATCACATAGCAGCATTATTAGCTGTGAGCTCTAAACAGCAAAA  1146
      |||| | |||||||||||||||||||||||||||||||| |||||   ||
seq2  GAAAGTAATCACATAGCAGCATTATTAGCTGTGAGCTCTTAACAG-TCAA  1143

seq1  TTGTTGCAAACATG-TCTCAGGACTA----CTAAAATTTTTG  1183
      ||||||| |||||| ||||||  |||     |||||||||||
seq2  TTGTTGC-AACATGTTCTCAGACCTATCTCTTAAAATTTTTG  1184


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