BAC Information

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BAC

Clone NameB6Ng01-212N17
Chromosome10 (Build37)12 (Build37)
Map Location 103,441,986 - 103,442,8464,794,576 - 4,795,348
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292, LOC100042383
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212N17.bB6Ng01-212N17.g
ACCGA030544GA030545
length1,121965
definitionB6Ng01-212N17.b B6Ng01-212N17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(103,441,986 - 103,442,846)(4,794,576 - 4,795,348)
sequence
gaattccatgctggtgatgaaccatattttctgtattcatttatcagttg
agggaaatctatgttgcttccagtttcttgctattatgaataaggctgct
ggctgctatgaaaatgattgcgcacatgaaatggctcccatctaaaaaga
aatgaagggacaaaaatgtagaaaatggagcagagactgaaggaagggct
gaccgcgaccaataatcagcccaatttaggatccatcccatggctgggca
ctaatcactgactattgctaatgctatgccttgcttgcacacaggagcac
agcatggctgccctctgagaggctcgacccaacagctgactgagactgat
gcaaatacccacagccaagcaatgggcagagattgggaactcctaaagaa
aagttaggagacagattgaagaaactgaggggggtggcagggggaccaat
ggtgtcagctgggttggacccaggagagctcccagagactggactatgta
tgagccaaggatcatacacaggctggtccagggactctggaacatatgtg
tcagggggttggttgccttgattggcctcagtgggaaaggtagtactgaa
tccaatgaagacttggtgacccgggataggaggataccagggagtggtga
catctcagaggcaaaagggagcagggacggtgggagggactcttcagggg
aggttggaaggagcaccatttggaatgtaaatgaatagaataattaatta
ataaaaatatccaggaatatccaatagtccccttgtaatttaagaatctt
cctggaaacaataacatgagaatccatagaaacaagctggctagctggac
tacacttataggtatagtctcaactcaattgagagacctttgctcccaaa
cacaaagcagaaagttagtatgaaaaatagtagctaggaatttgggactt
cttatgcataatcacacacccttggacacacatttgtgcaatgcaacatg
cacacacacacacacacacacacacacacacacacacacataccacttca
aacagtgcgagaattaattactttagagtactacttgaatgttgggacac
actgaaataccacagtgaaaa

gaattcacgcagttgaatccttctcaacagtctgttttacgggaacactt
cattaccaccattccccagctgaagagttttgaattcacgcagttgaatc
cttctcaacagtctgtgttgtgggaacacttcattaccatgacccgcagt
tctggttccggaatgagggatcttccttgcgccggtgatggtaaccttcc
caggttttctcgtcccaggtcttctcgtcctaggtcttctcgtcccgggt
cttcttgtcccgggtctcagcaccaactcttacacgcattcacgaccggc
caggaagaacgcaacaaaccagaatcttctgcggcaaaactttattgctt
acatcttcaggagccagagagcaagagagcaagagctctattgcttacat
ctttaggagccaaagtgcaagagagcaagagagagggcaagagcgcaaga
gcgcaagagctttattgcttacatcttcaggagcaagaagcaagagccag
agcaagagtgcaagagagcaaatggcaaaaccccgtccctttttaaggag
aattattctccgcctaggacgtattactccctgattggctgcagcccatc
ggccgagttgtcgtcacggggaaggcagagcacatgtagtggaaaactac
ccttggcacatgcgcagattatttgtttaccacttagaacacaggatgtc
agcgccatcttgcaacggcgaatgtgagggcagctccccacactgcatcc
cttagaaatcagcaacacatgtagttttgttaaataacagtattagtcat
tcattgtctaacttgtgtctgcctttataccatggcaaccaccattgcct
tctgttttgataaatatataaaaatttcttatttttttgaaataaacttg
tctcaaattcagtattgctgagacctctctaatatgggcctaatttatta
caattgactatatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_103441986_103442846
seq2: B6Ng01-212N17.b_305_1165

seq1  ACTATTGCTAATGCTATGCCTTGCTTGCACACAGGAGCACAGCATGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGCTAATGCTATGCCTTGCTTGCACACAGGAGCACAGCATGGCTG  50

seq1  CCCTCTGAGAGGCTCGACCCAACAGCTGACTGAGACTGATGCAAATACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGAGAGGCTCGACCCAACAGCTGACTGAGACTGATGCAAATACCC  100

seq1  ACAGCCAAGCAATGGGCAGAGATTGGGAACTCCTAAAGAAAAGTTAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAGCAATGGGCAGAGATTGGGAACTCCTAAAGAAAAGTTAGGAG  150

seq1  ACAGATTGAAGAAACTGAGGGGGGTGGCAGGGGGACCAATGGTGTCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTGAAGAAACTGAGGGGGGTGGCAGGGGGACCAATGGTGTCAGCT  200

seq1  GGGTTGGACCCAGGAGAGCTCCCAGAGACTGGACTATGTATGAGCCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGACCCAGGAGAGCTCCCAGAGACTGGACTATGTATGAGCCAAGG  250

seq1  ATCATACACAGGCTGGTCCAGGGACTCTGGAACATATGTGTCAGGGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACACAGGCTGGTCCAGGGACTCTGGAACATATGTGTCAGGGGGTT  300

seq1  GGTTGCCTTGATTGGCCTCAGTGGGAAAGGTAGTACTGAATCCAATGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCCTTGATTGGCCTCAGTGGGAAAGGTAGTACTGAATCCAATGAAG  350

seq1  ACTTGGTGACCCGGGATAGGAGGATACCAGGGAGTGGTGACATCTCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTGACCCGGGATAGGAGGATACCAGGGAGTGGTGACATCTCAGAG  400

seq1  GCAAAAGGGAGCAGGGACGGTGGGAGGGACTCTTCAGGGGAGGTTGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGGAGCAGGGACGGTGGGAGGGACTCTTCAGGGGAGGTTGGAAG  450

seq1  GAGCACCATTTGGAATGTAAATGAATAGAATAATTAATTAATAAAAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCATTTGGAATGTAAATGAATAGAATAATTAATTAATAAAAATAT  500

seq1  CCAGGAATATCCAATAGTCCCCTTGTAATTTAAGAATCTTCCTGGAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAATATCCAATAGTCCCCTTGTAATTTAAGAATCTTCCTGGAAACA  550

seq1  ATAACATGAGAATCCATAG-AACAAGCTGGCTAGCTGGACTACACTTATA  599
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATAACATGAGAATCCATAGAAACAAGCTGGCTAGCTGGACTACACTTATA  600

seq1  GGTATAGTCTCAACTCAATTGAGAGACC-TTGCTTCCAAACACAAAGCAG  648
      |||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  GGTATAGTCTCAACTCAATTGAGAGACCTTTGCTCCCAAACACAAAGCAG  650

seq1  AAAGTTAGTATGAAAAATAGTAGCTAGGAATTTGGGACTTCTTATGCAT-  697
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAGTTAGTATGAAAAATAGTAGCTAGGAATTTGGGACTTCTTATGCATA  700

seq1  ATCACACACCC-TGGACACACATTTGTGCCAATGCAACATGCACACACAC  746
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  ATCACACACCCTTGGACACACATTTGTG-CAATGCAACATGCACACACAC  749

seq1  ACACACACACACACACACACACACACACACATACCACCTCCAAACAAGTG  796
      |||||||||||||||||||||||||||||||||||| || ||||| ||||
seq2  ACACACACACACACACACACACACACACACATACCA-CTTCAAAC-AGTG  797

seq1  CGAG-ATAAATAACTTTAAGAAGTACTACTTGATGTTTGGGACAAATTAA  845
      |||| || ||| ||||||   ||||||||||||   |||||||| | | |
seq2  CGAGAATTAATTACTTTA--GAGTACTACTTGAATGTTGGGACACACTGA  845

seq1  AATACCACAGTGAAAA  861
      ||||||||||||||||
seq2  AATACCACAGTGAAAA  861


seq1: chr12_4794576_4795348
seq2: B6Ng01-212N17.g_64_800 (reverse)

seq1  GGAGCCGCCCTCACATTCGCCATTATAAGATGGTGCTGACA-GCTGTGTT  49
      ||||| ||||||||||||||| ||  ||||||| |||||||  |||||||
seq2  GGAGCTGCCCTCACATTCGCCGTTGCAAGATGGCGCTGACATCCTGTGTT  50

seq1  CTAAGTAGTAAAC--ATAATCTGCACACGTG-CAGGGGCAGTTTTCC-CG  95
      |||||| ||||||  ||||||||| || ||| || ||| |||||||| | 
seq2  CTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTAGTTTTCCACT  100

seq1  CCATGTGTTCTGCCTTTCTCGTGATGACAACTGGGCCGATGGGCTGCAGT  145
       |||||| |||||||| | ||||| ||||||| |||||||||||||||| 
seq2  ACATGTGCTCTGCCTTCCCCGTGACGACAACTCGGCCGATGGGCTGCAGC  150

seq1  CAATCAGGGAGTAATACGTCCTAGGCGGAGGATAATTCTCCTT-AAAAGG  194
      |||||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  CAATCAGGGAGTAATACGTCCTAGGCGGAGAATAATTCTCCTTAAAAAGG  200

seq1  AACGGGGTTTTGCCATT--CTTTTTCTCTCTCTTGTTCTTGCTTTTTCTC  242
       ||||||||||||||||  || | |  | |||||| ||| ||| || || 
seq2  GACGGGGTTTTGCCATTTGCTCTCTTGCACTCTTGCTCTGGCTCTTGCT-  249

seq1  TCTCTTGTTCTTG--CTTTTTCTCTCTCTTGTTCTTGCTTTTTCTCTCTC  290
        ||||| || ||    | |   |  |   | ||||||  | |  | |||
seq2  --TCTTGCTCCTGAAGATGTAAGCAATAAAGCTCTTGCGCTCTTGCGCTC  297

seq1  TTGTTCTTGCTTTTTCTCTCTCTTGCTCTTGCTTTCTTGTTCTTTTTCTC  340
      |||  ||  || | |  ||||||||| |||    || |     | |   |
seq2  TTGCCCT--CTCTCTTGCTCTCTTGCACTTTGGCTCCTAAAGATGTAAGC  345

seq1  TCTCTTGCTCTGGCTCTCTTGCACTCTGGCTCCTGAAGATGTAAGCAATA  390
        |   ||||| |||||||||| |||||||||||||||||||||||||||
seq2  AATAGAGCTCTTGCTCTCTTGCTCTCTGGCTCCTGAAGATGTAAGCAATA  395

seq1  AAGCTTTTGCCGCAGAAGATTCTGGTTTGTTGCGTTCTTCCTGGCCGGTC  440
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAG-TTTTGCCGCAGAAGATTCTGGTTTGTTGCGTTCTTCCTGGCCGGTC  444

seq1  GCGAACGCGTGTAAGAGTTGGTGCCGAAACGCGGGTAAGAGTTGGTGCTG  490
      | ||| ||||                        ||||||||||||||||
seq2  GTGAATGCGT------------------------GTAAGAGTTGGTGCTG  470

seq1  AGACCCGGGACGGGACGAGAAGACCTGGGACGAGAAATCCTGGGACGAGA  540
      |||||     |||||| |||||||| ||||||||||  ||| ||||||||
seq2  AGACC-----CGGGACAAGAAGACCCGGGACGAGAAGACCTAGGACGAGA  515

seq1  AGACCTGGGACGAGAAATCCCGGGACGAGAAGACCTGGGACGGTTACCAT  590
      |||||||||||||||||               |||||||| |||||||||
seq2  AGACCTGGGACGAGAAA---------------ACCTGGGAAGGTTACCAT  550

seq1  CACCGGCGCAAGGAAGATCCCTCATTCCGGAACCAGAACTGCGGGTCATG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGCGCAAGGAAGATCCCTCATTCCGGAACCAGAACTGCGGGTCATG  600

seq1  GTAATAAAG-GTTCCCATAAAACAGACTGTTGAGAAGGAT---CCGGCGT  686
      ||||| ||| ||||||| || |||||||||||||||||||    | ||||
seq2  GTAATGAAGTGTTCCCACAACACAGACTGTTGAGAAGGATTCAACTGCGT  650

seq1  GGATTCAGAACTCCTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCACA  736
      | ||||| ||||| |||||||||||||||||||||||||||||||||  |
seq2  GAATTCAAAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCGTA  700

seq1  ACACAGACTGTTGAGAAGGATTCAACTGCGTGAATTC  773
      | |||||||||||||||||||||||||||||||||||
seq2  AAACAGACTGTTGAGAAGGATTCAACTGCGTGAATTC  737


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