BAC Information

Click to search

BAC

Clone NameB6Ng01-212P02
Chromosome10 (Build37)
Map Location 50,522,908 - 50,523,776
singlet/doubletsinglet
Overlap geneAscc3
Upstream geneLOC629652
Downstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212P02.bB6Ng01-212P02.g
ACCGA030610GA030611
length8761,171
definitionB6Ng01-212P02.b B6Ng01-212P02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgaacaaatgtccatgactttcacagccaggtctggcagaga
agtagaggattaaatagcagttgtcttcagtcttcattttaattctgctt
ctgcagttcatgattaaaacaccagcaataacagcaagaagccagtaata
atatgtttatctaaaaatcagtaatatatttttaatttgtatggattata
ctatttgagcattaattagaaaacaatacaaggtttcaaaactgtgtgtt
ttttctgcaagtggagataaatgattctttcattttctctgtctgcacag
tatcttatgttagctccactgagatgcattgaagggtgtttccttatcac
ctatacaagtactgttttcaacattgaactaatatggatttaaaggagac
ctgataggagattagagactaaaacccacaatataaaatctatgttcaag
gggatacaacttctgaatatttgctatttaactatctcttgtaacaggag
aacattgtctttgaaagaacccgtgttttctatgactcaatgactcaaat
tcagtgattatttgagtggccagcaagatggctcagcaggtaaagggagt
tgaaaagagataataaaatatatatacatagtcataaacaaacttataca
cctgaaaaatatagaccaaaactcaagtaattgacccataagttagctca
tgtcatataagatatcagatatggagatcgtaatcattattataatacct
cacacttatataaaaattcttcactgtcacattgtattctcttttttttt
ttttttcccatttttttattaggtatttagctcatttacattttccaatg
ctataccaaaaagtccccccttaccc

gaattcaattcaaatgaagatacagcatatccaaacttattggacaggat
gaatacagtgccaagaaaaaaattcataacactaaagtgccatggcaaag
aaactggagagatcctagagatcttacactaacaacttaacagcacacct
gaaccctagaacagaagacacaaacacatgaaacacatggaagcagagta
gagagcaggaaataaccaaaatcagggccaaaatcaaccaaacacaaaga
aagagaatgataacaaagagtcaacaaaaccaaagcctggttctttgaga
aagtcaacaggataaataaaccccaagccaaactaactaaagggcacaga
gattgtatccaaattaacaaaatcagaaataaaaagagagacataacaac
agaaaatgaggaaattcaagaaatcatcagatcctactacaaaagcctat
acgcaacaaaactggaaagtctagatgaaatggatggttttctagaagat
accacataccaaagttaaatcaagagcaggcaaactatgtaaacagtccc
atatccccaaaggtaatcactaaaatcctctcaaaaaaaaaaaaaaaaaa
aaaagcccaggatcagatggatgtagcatagaattctacagaccatcaaa
gacaagctaatatcaacactcctcaaactattccataaaatagaaacaga
aggaacactgcctaattcattctattaagccacatttactctcataccta
aaccacacaaaggcacaacacagaaagagaattttagaccagttttgctt
atgaatatctatatgaaaatactcaataaaattctagcaaaccaaattca
agaacacatcaaacccatcactctccatgatcaagtaagcttcattcgag
ggatgcaaggttgggttcaacatatgaaaatcccactaacataatacact
atataaaccaactcaaagaaaatcatatgatcatcttcattacatgctat
aaacccatttgaccaaaatacaaccccctttcatgtaaagtatgggagag
atcaaggagtccagacccatacattagataattaaaccgcatatacagca
ctacagcccaattcacttaatgagaatgttgagcacctccccaccttata
ttcaggaccaaaaacctgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_50522908_50523776
seq2: B6Ng01-212P02.b_50_925

seq1  GAATTCCATGAACAAATGTCCATGACTTTCACAG-GAGGTCTGGCAGAGA  49
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  GAATTCCATGAACAAATGTCCATGACTTTCACAGCCAGGTCTGGCAGAGA  50

seq1  AGTAGAGGATTAAATAGCAGTTGTCTTCAGTCTTCATTTTAATTCTGCTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGGATTAAATAGCAGTTGTCTTCAGTCTTCATTTTAATTCTGCTT  100

seq1  CTGCAGTTCATGATTAAAACACCAGCAATAACAGCAAGAAGCCAGTAATA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTTCATGATTAAAACACCAGCAATAACAGCAAGAAGCCAGTAATA  150

seq1  ATATGTTTATCTAAAAATCAGTAATATATTTTTAATTTGTATGGATTATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTATCTAAAAATCAGTAATATATTTTTAATTTGTATGGATTATA  200

seq1  CTATTTGAGCATTAATTAGAAAACAATACAAGGTTTCAAAACTGTGTGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGAGCATTAATTAGAAAACAATACAAGGTTTCAAAACTGTGTGTT  250

seq1  TTTTCTGCAAGTGGAGATAAATGATTCTTTCATTTTCTCTGTCTGCACAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCAAGTGGAGATAAATGATTCTTTCATTTTCTCTGTCTGCACAG  300

seq1  TATCTTATGTTAGCTCCACTGAGATGCATTGAAGGGTGTTTCCTTATCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTATGTTAGCTCCACTGAGATGCATTGAAGGGTGTTTCCTTATCAC  350

seq1  CTATACAAGTACTGTTTTCAACATTGAACTAATATGGATTTAAAGGAGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAAGTACTGTTTTCAACATTGAACTAATATGGATTTAAAGGAGAC  400

seq1  CTGATAGGAGATTAGAGACTAAAACCCACAATATAAAATCTATGTTCAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGGAGATTAGAGACTAAAACCCACAATATAAAATCTATGTTCAAG  450

seq1  GGGATACAACTTCTGAATATTTGCTATTTAACTATCTCTTGTAACAGGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATACAACTTCTGAATATTTGCTATTTAACTATCTCTTGTAACAGGAG  500

seq1  AACATTGTCTTTGAAAGAACCCGTGTTTTCTATGACTCAATGACTCAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGTCTTTGAAAGAACCCGTGTTTTCTATGACTCAATGACTCAAAT  550

seq1  TCAGTGATTATTTGAGTGGCCAGCAAGATGGCTCAGCAGGTAAAGGGAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGATTATTTGAGTGGCCAGCAAGATGGCTCAGCAGGTAAAGGGAGT  600

seq1  TGAAAAGAGATAATAAAATATATATACATAGTCATAAACAAACTTATACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAGATAATAAAATATATATACATAGTCATAAACAAACTTATACA  650

seq1  CCTGAAAAATATAGACCAAAACTCAAGTAATTGACCCATAAGTTAGCTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAATATAGACCAAAACTCAAGTAATTGACCCATAAGTTAGCTCA  700

seq1  TGTCATATAAGATATCAGATATGGAGATCGTAATCATTATTATAATACCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATATAAGATATCAGATATGGAGATCGTAATCATTATTATAATACCT  750

seq1  CACACTTATATAAAAATTCTTCACTGTCACATTGTATTCTCTTTTTTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTATATAAAAATTCTTCACTGTCACATTGTATTCTCTTTTTTTTT  800

seq1  TTTTT--CCA-TTTTTTATTAGGTATTTAGCTCATTTACA-TTTCCAATG  845
      |||||  ||| ||||||||||||||||||||||||||||| |||||||||
seq2  TTTTTTCCCATTTTTTTATTAGGTATTTAGCTCATTTACATTTTCCAATG  850

seq1  CTATACC-AAAAGT-CCCCCTTACCC  869
      ||||||| |||||| |||||||||||
seq2  CTATACCAAAAAGTCCCCCCTTACCC  876


| Home | SequenceCutter | Blast | Download |