BAC Information

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BAC

Clone NameB6Ng01-213A03
Chromosome10 (Build37)
Map Location 27,788,376 - 27,927,301
singlet/doubletdoublet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213A03.bB6Ng01-213A03.g
ACCGA030656GA030657
length1,214759
definitionB6Ng01-213A03.b B6Ng01-213A03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,926,076 - 27,927,301)(27,788,376 - 27,789,119)
sequence
gaattcatttgcaccctcatttgaatgtctttcatttgagttttatttta
tttgcgttgagaccttgtcatagtccactgatcatcaccaatgatttttc
cttttgtgtttatgaatcatgttaactagcaaggtttcttaatcagccac
cttaattgatatttgcacttccaatggcaatgtctgaaactcacagtcaa
ctatgaaggacatgcttaatttaaatttagctatctctatgtaattataa
tacaaaataaattatacttcaaaagaaattatttgaagaacattaacatc
agctatatgatttaaagcataaagggtgttatctttttacacatacataa
ttttatatataatcatttgcttcttgctaagcaacacttgttctcctagg
tactatggttcaaatttggtgtttacgtttctgattcttataattattca
aattattactaaacacataacttagagttagtttcaaactaatatataga
actgaaaaacacactagtcccatattatattaagtggaaagtatatattg
atatgctattttgttgtgcttttcacaagtcacaaaaaataaaataaaat
aaaataaaataataacatgacctgtcttaagcaatcagaaaatatactgc
ctcagaaaatcaaaagtcaatacctacaacaagttctatatcagtaagaa
actctgtgtgtatccacaaaatttactcagaaagcatctcggcttgataa
ttttgtctccaaggtctctctttgtagaagaattggctcatcatggtctg
tgggagaatgagaccatttatctccttaccaacaactagtgcttgcttag
agtctaactagatcacacctatgagagatgatcaaagatatgaaataaga
catgaatcaatgatcaaatgatttggttaaatgatcaaaataagttttac
ttgatcattttgacttcttattaagagacaaaaacagctaatgtttataa
acttacataatttttgcaaagcacagaaagttgtattcagaaattttgaa
gaatataggaggtatagaatatgttaaagaaaatttaaatttttacatgt
tgaccaaatagaccacttaataagctaatataacaaattttctattggta
catgtaagtgaaaaccttgctttgtttttttttttcggaaaattccttag
aactggaattaggg
gaattcagatagcaatcaagtgcatgccaaaagctgggttgctgtcagcc
tctttgtactgaattatttttacgtgtgtgtgtgtgtgtgtgtgagtgat
tgtgtgtaagtgtctgcttgtgtgtaggtacgtgaataggagtgtggttg
cctgccgaagccagagaggacatcgaaacacctgaagtgggagttacagc
cagctctgagacaccttcatgtggatgctgagaactgaacctgggtcatc
taaactcctgagacatctctttagcccctatgccttttccttctcttaca
gttaatctagagaaacaaaatacattttcagtggcaaggaatggagaata
ttcagtagtataaaagaagagaataaggcatgtttgtaaatatccagctt
tatcaaacacgtaataggttactgtaaggccacacacacccccattccta
gtttaatctttcataacatcactagactgttttctgaaaaggagaggctg
tctcctatgagactatgccagctctggaattactgtccctttcccattgc
tccacctcaatccaattcacacttttatgatttgcttcctttttgaccca
ggcttgttaattatatccagctgtaggcaaattgctcttccaaattggca
actctgagctctcaagttgcttgcattttttttttctttcccttgataaa
aaccttttggagcatgcattttttcttgactagtgtttctgaaataatct
ctcatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_27926076_27927301
seq2: B6Ng01-213A03.b_44_1257 (reverse)

seq1  CCCTAATTCAATGTCTAGGGAATATTTCCGAAAAAAAAAAAAAAAAACAA  50
      ||||||||| |  |||| ||||| ||||||||||||||||| |     ||
seq2  CCCTAATTCCAGTTCTAAGGAAT-TTTCCGAAAAAAAAAAACA-----AA  44

seq1  ACAAGATTTTTTCACTTTACATGTAACAATAG-AAATTTGTTATATTAAG  99
       ||||   ||||||| ||||||||| |||||| |||||||||||||| ||
seq2  GCAAG--GTTTTCAC-TTACATGTACCAATAGAAAATTTGTTATATT-AG  90

seq1  CTTATTAAGTGGTCTATTTGGTC-ACATGTAAAAAATTTTAAAATTTTCT  148
      ||||||||||||||||||||||| |||||||||||   || |||||||||
seq2  CTTATTAAGTGGTCTATTTGGTCAACATGTAAAAA---TTTAAATTTTCT  137

seq1  TTACAATATTCTATACCTTCCTATATTCTTCAAAATTTCTGAATACAACT  198
      |||  |||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTAACATATTCTATACC-TCCTATATTCTTCAAAATTTCTGAATACAACT  186

seq1  TTCTGTGCTTTGCAAAAATTATGTAAGTTTATAAACATTAGCTGTTTTTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGCTTTGCAAAAATTATGTAAGTTTATAAACATTAGCTGTTTTTG  236

seq1  TCTCTTAATAAGAAGTCAAAATGATCAAGTAAAACTTATTTTGATCATTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAATAAGAAGTCAAAATGATCAAGTAAAACTTATTTTGATCATTT  286

seq1  AACCAAATCATTTGATCATTGATTCATGTCTTATTTCATATCTTTGATCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATCATTTGATCATTGATTCATGTCTTATTTCATATCTTTGATCA  336

seq1  TCTCTCATAGGTGTGATCTAGTTAGACTCTAAGCAAGCACTAGTTGTTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATAGGTGTGATCTAGTTAGACTCTAAGCAAGCACTAGTTGTTGG  386

seq1  TAAGGAGATAAATGGTCTCATTCTCCCACAGACCATGATGAGCCAATTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGATAAATGGTCTCATTCTCCCACAGACCATGATGAGCCAATTCT  436

seq1  TCTACAAAGAGAGACCTTGGAGACAAAATTATCAAGCCGAGATGCTTTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGAGAGACCTTGGAGACAAAATTATCAAGCCGAGATGCTTTCT  486

seq1  GAGTAAATTTTGTGGATACACACAGAGTTTCTTACTGATATAGAACTTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAATTTTGTGGATACACACAGAGTTTCTTACTGATATAGAACTTGT  536

seq1  TGTAGGTATTGACTTTTGATTTTCTGAGGCAGTATATTTTCTGATTGCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTATTGACTTTTGATTTTCTGAGGCAGTATATTTTCTGATTGCTT  586

seq1  AAGACAGGTCATGTTATTATTTTATTTTATTTTATTTTATTTTTTGTGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGTCATGTTATTATTTTATTTTATTTTATTTTATTTTTTGTGAC  636

seq1  TTGTGAAAAGCACAACAAAATAGCATATCAATATATACTTTCCACTTAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAAAGCACAACAAAATAGCATATCAATATATACTTTCCACTTAAT  686

seq1  ATAATATGGGACTAGTGTGTTTTTCAGTTCTATATATTAGTTTGAAACTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATGGGACTAGTGTGTTTTTCAGTTCTATATATTAGTTTGAAACTA  736

seq1  ACTCTAAGTTATGTGTTTAGTAATAATTTGAATAATTATAAGAATCAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAGTTATGTGTTTAGTAATAATTTGAATAATTATAAGAATCAGAA  786

seq1  ACGTAAACACCAAATTTGAACCATAGTACCTAGGAGAACAAGTGTTGCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAACACCAAATTTGAACCATAGTACCTAGGAGAACAAGTGTTGCTT  836

seq1  AGCAAGAAGCAAATGATTATATATAAAATTATGTATGTGTAAAAAGATAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAAGCAAATGATTATATATAAAATTATGTATGTGTAAAAAGATAA  886

seq1  CACCCTTTATGCTTTAAATCATATAGCTGATGTTAATGTTCTTCAAATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTTATGCTTTAAATCATATAGCTGATGTTAATGTTCTTCAAATAA  936

seq1  TTTCTTTTGAAGTATAATTTATTTTGTATTATAATTACATAGAGATAGCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGAAGTATAATTTATTTTGTATTATAATTACATAGAGATAGCT  986

seq1  AAATTTAAATTAAGCATGTCCTTCATAGTTGACTGTGAGTTTCAGACATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAATTAAGCATGTCCTTCATAGTTGACTGTGAGTTTCAGACATT  1036

seq1  GCCATTGGAAGTGCAAATATCAATTAAGGTGGCTGATTAAGAAACCTTGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGGAAGTGCAAATATCAATTAAGGTGGCTGATTAAGAAACCTTGC  1086

seq1  TAGTTAACATGATTCATAAACACAAAAGGAAAAATCATTGGTGATGATCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAACATGATTCATAAACACAAAAGGAAAAATCATTGGTGATGATCA  1136

seq1  GTGGACTATGACAAGGTCTCAACGCAAATAAAATAAAACTCAAATGAAAG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTATGACAAGGTCTCAACGCAAATAAAATAAAACTCAAATGAAAG  1186

seq1  ACATTCAAATGAGGGTGCAAATGAATTC  1226
      ||||||||||||||||||||||||||||
seq2  ACATTCAAATGAGGGTGCAAATGAATTC  1214

seq1: chr10_27788376_27789119
seq2: B6Ng01-213A03.g_64_812

seq1  GAATTCAGATAGCAATCAAGTGCATGCCAAAAGCTGGGTTGCTGTCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATAGCAATCAAGTGCATGCCAAAAGCTGGGTTGCTGTCAGCC  50

seq1  TCTTTGTACTGAATTATTTTTACGTGTGTGTGTGTGTGTGTGTGAGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTACTGAATTATTTTTACGTGTGTGTGTGTGTGTGTGTGAGTGAT  100

seq1  TGTGTGTAAGTGTCTGCTTGTGTGTAGGTACGTGAATAGGAGTGTGGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTAAGTGTCTGCTTGTGTGTAGGTACGTGAATAGGAGTGTGGTTG  150

seq1  CCTGCCGAAGCCAGAGAGGACATCGAAACACCTGAAGTGGGAGTTACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCGAAGCCAGAGAGGACATCGAAACACCTGAAGTGGGAGTTACAGC  200

seq1  CAGCTCTGAGACACCTTCATGTGGATGCTGAGAACTGAACCTGGGTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGAGACACCTTCATGTGGATGCTGAGAACTGAACCTGGGTCATC  250

seq1  TAAACTCCTGAGACATCTCTTTAGCCCCTATGCCTTTTCCTTCTCTTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCCTGAGACATCTCTTTAGCCCCTATGCCTTTTCCTTCTCTTACA  300

seq1  GTTAATCTAGAGAAACAAAATACATTTTCAGTGGCAAGGAATGGAGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCTAGAGAAACAAAATACATTTTCAGTGGCAAGGAATGGAGAATA  350

seq1  TTCAGTAGTATAAAAGAAGAGAATAAGGCATGTTTGTAAATATCCAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAGTATAAAAGAAGAGAATAAGGCATGTTTGTAAATATCCAGCTT  400

seq1  TATCAAACACGTAATAGGTTACTGTAAGGCCACACACACCCCCATTCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAACACGTAATAGGTTACTGTAAGGCCACACACACCCCCATTCCTA  450

seq1  GTTTAATCTTTCATAACATCACTAGACTGTTTTCTGAAAAGGAGAGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATCTTTCATAACATCACTAGACTGTTTTCTGAAAAGGAGAGGCTG  500

seq1  TCTCCTATGAGACTATGCCAGCTCTGGAATTACTGTCCCTTTCCCATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTATGAGACTATGCCAGCTCTGGAATTACTGTCCCTTTCCCATTGC  550

seq1  TCCACCTCAATCCAATTCACACTTTTATGATTTGCTTCCTTTTTGACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCAATCCAATTCACACTTTTATGATTTGCTTCCTTTTTGACCCA  600

seq1  GGCTTGTTAATTATATCCAGCTGTAGGCAAATTGCTCTTCCAAATTGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTTAATTATATCCAGCTGTAGGCAAATTGCTCTTCCAAATTGGCA  650

seq1  ACTCTGAGCTCTCAAGCTGCTTGCA--TTTTTTTTCTTTCCCTTGATAAA  698
      |||||||||||||||| ||||||||  |||||||||||||||||||||||
seq2  ACTCTGAGCTCTCAAGTTGCTTGCATTTTTTTTTTCTTTCCCTTGATAAA  700

seq1  A--CCTTTGGAGCATGCA-TTTTTCTTGACTAGTGTTTCTGAAATAATC  744
      |  | ||||||||||||| ||||||||||||||||||||||||||||||
seq2  AACCTTTTGGAGCATGCATTTTTTCTTGACTAGTGTTTCTGAAATAATC  749