BAC Information

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BAC

Clone NameB6Ng01-213K08
Chromosome10 (Build37)11 (Build37)
Map Location 100,794,400 - 100,794,51596,160,163 - 96,160,897
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213K08.bB6Ng01-213K08.g
ACCGA031108GA031109
length373735
definitionB6Ng01-213K08.b B6Ng01-213K08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,794,400 - 100,794,515)(96,160,163 - 96,160,897)
sequence
cagtgccaggccagcctgatctacacagtgagttctaggacagctagggt
tgtataaagagagctattttttgtttaatgtgtacaagtgtcttgcctgt
gtttatgcatgtgcaccaagaagatatctggtgctcatagaggccaaaag
agggcacccgatcccctggatctagagttagagatggttgtgagctgcca
tgtgggtgctgggccagaacaagggaggtgagtgctgctacctctgagcc
atctcttccacctcttaattttagtcatatatatatgtatatgtatgtat
atatatatatatgtctaaaattaagaggtggaagagatggttttgtggtt
gttgctttttcttcctttgttta
gaattcatgcgctgcatccacgggtagacgggcgtggagcacttctgctc
ctcggtctctccgaacacgctcttgtcctgtgcgcagtcggacttgcgcg
gctcggggtggaacgggggcggctcgtcggcgccggagagagcgcaggcc
gcgtccttctcccggtagaaggcaggcgccggcccataatcacagggcgc
cgcccggccgtagccgccgccggctggtgggtaataggaggacgccgcaa
agcccttgtcctggccgggtcccggcccataaggcgcggggtagtgccgc
agcgggtccgcatagccagacgagtagagcggcagctggcccaggaagga
ctcctgcccgctggccagagtgacggggaaggtggagttcacgaaatagg
aactcatcgggaggggaggcgcgcgaggccgctgctgctccgccgggttt
atgatttgttgtgttttatagtccgagcgccgcgcctattagtagtatag
ccgagattgggttttagctgaggggggatggcgaggtgccagtgagggcc
agaaggaaatacaaccatctgatccaacactgaccaatggcagaggcagg
aattgtcaaatagcacccaggaggagcgcagcctgcacgagggacccgcg
cacaaacctatcaaccttttccccctccttcctctctctctctctctctc
tctctctctctctcctctctctctctctctgctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_100794400_100794515
seq2: B6Ng01-213K08.b_328_421 (reverse)

seq1  TAAACAAAGGAAGAAAAAAATCTTTGACCATCTACTCTAATGCATTTATC  50
      |||||||||||||||||         | || | ||   ||       | |
seq2  TAAACAAAGGAAGAAAA---------AGCAACAACCACAA------AACC  35

seq1  ATCACTTTCAAAGCTCTT-TTCATATATATATATATATATATATATACAT  99
      ||| ||| |  | |||||  |  || | ||||||||||||||| ||||||
seq2  ATCTCTTCC--ACCTCTTAATTTTAGACATATATATATATATACATACAT  83

seq1  ATACATATATATATATA  116
      |||||||||||      
seq2  ATACATATATA------  94

seq1: chr11_96160163_96160897
seq2: B6Ng01-213K08.g_70_804 (reverse)

seq1  AGAG-AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  49
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAGCAGAGAGAGAGAGAGAG-GAGAGAGAGAGAGAGAGAGAGAGAGAGA  49

seq1  GAGAGGAAGGAGGGGGAAAAGGTTGATAGGTTTGTGCGCGGGTCCCTCGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAAGGAGGGGGAAAAGGTTGATAGGTTTGTGCGCGGGTCCCTCGT  99

seq1  GCAGGCTGCGCTCCTCCTGGGTGCTATTTGACAATTCCTGCCTCTGCCAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTGCGCTCCTCCTGGGTGCTATTTGACAATTCCTGCCTCTGCCAT  149

seq1  TGGTCAGTGTTGGATCAGATGGTTGTATTTCCTTCTGGCCCTCACTGGCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGTGTTGGATCAGATGGTTGTATTTCCTTCTGGCCCTCACTGGCA  199

seq1  CCTCGCCATCCCCCCTCAGCTAAAACCCAATCTCGGCTATACTACTAATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCCATCCCCCCTCAGCTAAAACCCAATCTCGGCTATACTACTAATA  249

seq1  GGCGCGGCGCTCGGACTATAAAACACAACAAATCATAAACCCGGCGGAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCGGCGCTCGGACTATAAAACACAACAAATCATAAACCCGGCGGAGC  299

seq1  AGCAGCGGCCTCGCGCGCCTCCCCTCCCGATGAGTTCCTATTTCGTGAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCGGCCTCGCGCGCCTCCCCTCCCGATGAGTTCCTATTTCGTGAAC  349

seq1  TCCACCTTCCCCGTCACTCTGGCCAGCGGGCAGGAGTCCTTCCTGGGCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTTCCCCGTCACTCTGGCCAGCGGGCAGGAGTCCTTCCTGGGCCA  399

seq1  GCTGCCGCTCTACTCGTCTGGCTATGCGGACCCGCTGCGGCACTACCCCG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCGCTCTACTCGTCTGGCTATGCGGACCCGCTGCGGCACTACCCCG  449

seq1  CGCCTTATGGGCCGGGACCCGGCCAGGACAAGGGCTTTGCGGCGTCCTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTATGGGCCGGGACCCGGCCAGGACAAGGGCTTTGCGGCGTCCTCC  499

seq1  TATTACCCACCAGCCGGCGGCGGCTACGGCCGGGCGGCGCCCTGTGATTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCCACCAGCCGGCGGCGGCTACGGCCGGGCGGCGCCCTGTGATTA  549

seq1  TGGGCCGGCGCCTGCCTTCTACCGGGAGAAGGACGCGGCCTGCGCTCTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCGGCGCCTGCCTTCTACCGGGAGAAGGACGCGGCCTGCGCTCTCT  599

seq1  CCGGCGCCGACGAGCCGCCCCCGTTCCACCCCGAGCCGCGCAAGTCCGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCGCCGACGAGCCGCCCCCGTTCCACCCCGAGCCGCGCAAGTCCGAC  649

seq1  TGCGCACAGGACAAGAGCGTGTTCGGAGAGACCGAGGAGCAGAAGTGCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCACAGGACAAGAGCGTGTTCGGAGAGACCGAGGAGCAGAAGTGCTC  699

seq1  CACGCCCGTCTACCCGTGGATGCAGCGCATGAATTC  735
      ||||||||||||||||||||||||||||||||||||
seq2  CACGCCCGTCTACCCGTGGATGCAGCGCATGAATTC  735