BAC Information

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BAC

Clone NameB6Ng01-214B11
Chromosome10 (Build37)
Map Location 9,464,963 - 9,589,589
singlet/doubletdoublet
Overlap geneStxbp5
Upstream geneSash1, EG666625, LOC666636, E130306M17Rik, LOC666658, LOC620417
Downstream geneLOC100039238, LOC665110, 9130014G24Rik, Rab32, EG382450, Grm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214B11.bB6Ng01-214B11.g
ACCGA031436GA031437
length1,2021,076
definitionB6Ng01-214B11.b B6Ng01-214B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,464,963 - 9,466,155)(9,588,509 - 9,589,589)
sequence
gaattcaacatcagaattaaccagaggagcccagtagctaagaaaatagg
aaaaggaggttcatgtccagtgacacaaacaaggggaagcattccgattc
ctcataaacaccagacagttgaaaatgctctaatgaaagtataatgttgt
tgattcacctcttcaatttatggacaagaacactggagacacagagacca
attctcctaaggtgccttctttctagaggccccgatatgcttttgtttaa
aataacttatttttcctcttagcaggctcataggaggaattatctttcct
tcttcaaaaggctttaaggatcacatcatctgtgacttgctaaaactcaa
agatcctttacattttaatgttcttttttctatcccagttaaactggatc
atgtctcaggagacctgggtccactcggtgtctaatgggtgtctggcccc
gttctgagtttaagaatacagcagacaacaaagggattttatttaaggtt
taaatgggttctgagaatttaacttgggtccccatgcatgcaaaacaagg
ggccctcacccattgagctatctcccagggtccaagaaaggcttctcagt
gaggaaacatttaaattgagttctaaaggatgagaaaggaccaaacacac
aagggcacgggaaatacggagtgttcaggagtgttcagctacgaggaagc
acaacattgaaaagaacatgtgttgtgggtaaagagaaagaagtcatgtg
gcagggagaggcaattgccattttggatttccccctaaggatctctaatc
tcagctatgcaggggggcctacctccgtgaaatcgagcaagggtctttgt
tatttgatgtcgttggtttttcacctggaggcttagagttctagccttat
ctagttgctcagtgggtcctgctcttgcagcaattgtagtgacagcttta
aacaactttcatttacaggatagagagacaagaagctcagtggttaagag
tacatactgctcttgctgaaaactggaaatttggttccagaatcccactc
tgagcatctcacatcttcacaaactccagaaggaaccagctgccatcttc
ttagctcaatcagcacccttcattccaatgtacaaataaagcataacaca
caaaataaaaaaacaaaattgaattttttctcatgaatttcacttagaca
gc

gaattcagagtgacaaagtacaataaaataaggaaaacatttaccattag
tcagctttgctccataattgatcgatatgtcagagtacagaacaataaat
gaacatatcttcatttaataaatatattatcaaaaaatttcaatatgtag
tcctccttggattgctttgtaatttgcatttcagatagtttgtgtcttca
tttgattatgaatataggcacgagagatggaaatatttaaccaagtagat
ggttattagaaagttagattattttgtgggaaggatgttctttcagaaat
gtcagcatcaggaggagccatgcatacacagccactggtgtaaggatgtg
ggattatttgtgcctgtggttttctgttttatgacacagtatattcaaga
ttgatgctttcttttagtctgttttgtccactgtaaagtaacagtttcag
ctagtgtaacaaatgtgttgagtcaagtaacataaagactattatttggt
gagtccatgtgtgttttaattctcacacatgtgtgtgtctgcatactaga
ctgcataggtcttagtgtactttatggattaggaagttgacaaattcttt
gacggtcatagtgaagatgattaagctggcatatgaactgacttaaaaga
tgaaatcttaattttcattgtgcctcagatggtcttgtggcacctaaagt
aaacttcctagctaaccactctacccacctaccatttcctttggcaggct
gggcttactatatttgcagtagagttgaaattcatacgtactaccagggt
cagagctacttactataatttttttcttgagggtttctctgtatagccct
ggctgttctagaatttactctgtagaccaggcctcgaacttagaaatccg
cctgcctctgcctctcaagtgctcagattaaaggcatgcgccaccactgc
ctggcttctaagttctatgttttgtcaatgctatcttttgtgataacttt
ccccgcccccgacttactatgatactgtcctgatcagctctgtcagtgcc
agtttgctctctgctgtgtctgaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_9464963_9466155
seq2: B6Ng01-214B11.b_46_1247

seq1  GAATTCAACATCAGAATTAACCAGAGGAGCCCAGTAGCTAAGAAAATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATCAGAATTAACCAGAGGAGCCCAGTAGCTAAGAAAATAGG  50

seq1  AAAAGGAGGTTCATGTCCAGTGACACAAACAAGGGGAAGCATTCCGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGGTTCATGTCCAGTGACACAAACAAGGGGAAGCATTCCGATTC  100

seq1  CTCATAAACACCAGACAGTTGAAAATGCTCTAATGAAAGTATAATGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAACACCAGACAGTTGAAAATGCTCTAATGAAAGTATAATGTTGT  150

seq1  TGATTCACCTCTTCAATTTATGGACAAGAACACTGGAGACACAGAGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCACCTCTTCAATTTATGGACAAGAACACTGGAGACACAGAGACCA  200

seq1  ATTCTCCTAAGGTGCCTTCTTTCTAGAGGCCCCGATATGCTTTTGTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTAAGGTGCCTTCTTTCTAGAGGCCCCGATATGCTTTTGTTTAA  250

seq1  AATAACTTATTTTTCCTCTTAGCAGGCTCATAGGAGGAATTATCTTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTATTTTTCCTCTTAGCAGGCTCATAGGAGGAATTATCTTTCCT  300

seq1  TCTTCAAAAGGCTTTAAGGATCACATCATCTGTGACTTGCTAAAACTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAAAGGCTTTAAGGATCACATCATCTGTGACTTGCTAAAACTCAA  350

seq1  AGATCCTTTACATTTTAATGTTCTTTTTTCTATCCCAGTTAAACTGGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTTTACATTTTAATGTTCTTTTTTCTATCCCAGTTAAACTGGATC  400

seq1  ATGTCTCAGGAGACCTGGGTCCACTCGGTGTCTAATGGGTGTCTGGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCAGGAGACCTGGGTCCACTCGGTGTCTAATGGGTGTCTGGCCCC  450

seq1  GTTCTGAGTTTAAGAATACAGCAGACAACAAAGGGATTTTATTTAAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAGTTTAAGAATACAGCAGACAACAAAGGGATTTTATTTAAGGTT  500

seq1  TAAATGGGTTCTGAGAATTTAACTTGGGTCCCCATGCATGCAAAACAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGGTTCTGAGAATTTAACTTGGGTCCCCATGCATGCAAAACAAGG  550

seq1  GGCCCTCACCCATTGAGCTATCTCCCAGGGTCCAAGAAAGGCTTCTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCACCCATTGAGCTATCTCCCAGGGTCCAAGAAAGGCTTCTCAGT  600

seq1  GAGGAAACATTTAAATTGAGTTCTAAAGGATGAGAAAGGACCAAACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACATTTAAATTGAGTTCTAAAGGATGAGAAAGGACCAAACACAC  650

seq1  AAGGGCACGGGAAATACGGAGTGTTCAGGAGTGTTCAGCTACGAGGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCACGGGAAATACGGAGTGTTCAGGAGTGTTCAGCTACGAGGAAGC  700

seq1  ACAACATTGAAAAGAACATGTGTTGTGGGTAAAGAGAAAGAAGTCATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATTGAAAAGAACATGTGTTGTGGGTAAAGAGAAAGAAGTCATGTG  750

seq1  GCAGGGAGAGGCAATTGCCATTTTGGATTTCCCCCTAAGGATCTCTAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAGAGGCAATTGCCATTTTGGATTTCCCCCTAAGGATCTCTAATC  800

seq1  TCAGCTATGCA-GGGGGCCTACCTCCGTGAAATCGAGCAAGGGTCTTTGT  849
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTATGCAGGGGGGCCTACCTCCGTGAAATCGAGCAAGGGTCTTTGT  850

seq1  TATTTGATGTCGTTGGTTTTTCACCTGGAGGCTTAGAGTTCTAGCCTTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATGTCGTTGGTTTTTCACCTGGAGGCTTAGAGTTCTAGCCTTAT  900

seq1  CTAGTTGCTCAGT-GGTCCTGCTCTTGCAGCAATTGTAGTGACAGCTTTA  948
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGCTCAGTGGGTCCTGCTCTTGCAGCAATTGTAGTGACAGCTTTA  950

seq1  AAC-ACTTTCATTTACAGGATAGAGAGACAAGAAGGCTCAGTGGTTAAGA  997
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  AACAACTTTCATTTACAGGATAGAGAGACAAGAA-GCTCAGTGGTTAAGA  999

seq1  GTACATACTGCTCTTGCTGAAAACTGG-AATTTGGTTCCCAGAA-CCCAC  1045
      ||||||||||||||||||||||||||| ||||||||| |||||| |||||
seq2  GTACATACTGCTCTTGCTGAAAACTGGAAATTTGGTT-CCAGAATCCCAC  1048

seq1  TCTGAGCATCTCACATCCTCACCAAACTCCAGA--GGACCAGCTGCCATC  1093
      ||||||||||||||||| ||| |||||||||||  | |||||||||||||
seq2  TCTGAGCATCTCACATCTTCA-CAAACTCCAGAAGGAACCAGCTGCCATC  1097

seq1  TTCTAGCCTCCATCAGCACCC-TCATTCCCATGTACAAAT-AAGCAT-AC  1140
      ||||   ||| |||||||||| ||||||| |||||||||| |||||| ||
seq2  TTCTTAGCTCAATCAGCACCCTTCATTCCAATGTACAAATAAAGCATAAC  1147

seq1  ACACAAAATTAAAAACAAAAATAGATTTTTTTCT-ACAGATTTCACTTAG  1189
      ||||||||| |||||  ||||| || |||||||| |   |||||||||||
seq2  ACACAAAATAAAAAAACAAAATTGAATTTTTTCTCATGAATTTCACTTAG  1197

seq1  -CAGC  1193
       ||||
seq2  ACAGC  1202


seq1: chr10_9588509_9589589
seq2: B6Ng01-214B11.g_65_1140 (reverse)

seq1  CCTTCAGACACAGCAGAGAGCAAACTGGCAACCTGAACAGAGGCTGGATC  50
      ||||||||||||||||||||||||||||||  ||| ||||| ||| ||||
seq2  CCTTCAGACACAGCAGAGAGCAAACTGGCA--CTG-ACAGA-GCT-GATC  45

seq1  AGGACAGTATCATAGTAAGTCGGGGGCGGGGGAAAGTTATCACAAAAGAT  100
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGACAGTATCATAGTAAGTCGGGGGC-GGGGAAAGTTATCACAAAAGAT  94

seq1  AGCATTGACAAAACATAGAACTTAGAAGCCAGGCAGTGGTGGCGCATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGACAAAACATAGAACTTAGAAGCCAGGCAGTGGTGGCGCATGCC  144

seq1  TTTAATCTGAGCACTTGAGAGGCAGAGGCAGGCGGATTTCTAAGTTCGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTGAGCACTTGAGAGGCAGAGGCAGGCGGATTTCTAAGTTCGAG  194

seq1  GCCTGGTCTACAGAGTAAATTCTAGAACAGCCAGGGCTATACAGAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAGAGTAAATTCTAGAACAGCCAGGGCTATACAGAGAAAC  244

seq1  CCTCAAG-AAAAAATTATAGTAAGTAGCTCTGACCCTGGTAGTACGTATG  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGAAAAAAATTATAGTAAGTAGCTCTGACCCTGGTAGTACGTATG  294

seq1  AATTTCAACTCTACTGCAAATATAGTAAGCCCAGCCTGCCAAAGGAAATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAACTCTACTGCAAATATAGTAAGCCCAGCCTGCCAAAGGAAATG  344

seq1  GTAGGTGGGTAGAGTGGTTAGCTAGGAAGTTTACTTTAGGTGCCACAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGGGTAGAGTGGTTAGCTAGGAAGTTTACTTTAGGTGCCACAAGA  394

seq1  CCATCTGAGGCACAATGAAAATTAAGATTTCATCTTTTAAGTCAGTTCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGAGGCACAATGAAAATTAAGATTTCATCTTTTAAGTCAGTTCAT  444

seq1  ATGCCAGCTTAATCATCTTCACTATGACCGTCAAAGAATTTGTCAACTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGCTTAATCATCTTCACTATGACCGTCAAAGAATTTGTCAACTTC  494

seq1  CTAATCCATAAAGTACACTAAGACCTATGCAGTCTAGTATGCAGACACAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCATAAAGTACACTAAGACCTATGCAGTCTAGTATGCAGACACAC  544

seq1  ACATGTGTGAGAATTAAAACACACATGGACTCACCAAATAATAGTCTTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTGAGAATTAAAACACACATGGACTCACCAAATAATAGTCTTTA  594

seq1  TGTTACTTGACTCAACACATTTGTTACACTAGCTGAAACTGTTACTTTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTTGACTCAACACATTTGTTACACTAGCTGAAACTGTTACTTTAC  644

seq1  AGTGGACAAAACAGACTAAAAGAAAGCATCAATCTTGAATATACTGTGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACAAAACAGACTAAAAGAAAGCATCAATCTTGAATATACTGTGTC  694

seq1  ATAAAACAGAAAACCACAGGCACAAATAATCCCACATCCTTACACCAGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAGAAAACCACAGGCACAAATAATCCCACATCCTTACACCAGTG  744

seq1  GCTGTGTATGCATGGCTCCTCCTGATGCTGACATTTCTGAAAGAACATCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTATGCATGGCTCCTCCTGATGCTGACATTTCTGAAAGAACATCC  794

seq1  TTCCCACAAAATAATCTAACTTTCTAATAACCATCTACTTGGTTAAATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACAAAATAATCTAACTTTCTAATAACCATCTACTTGGTTAAATAT  844

seq1  TTCCATCTCTCGTGCCTATATTCATAATCAAATGAAGACACAAACTATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTCTCGTGCCTATATTCATAATCAAATGAAGACACAAACTATCT  894

seq1  GAAATGCAAATTACAAAGCAATCCAAGGAGGACTACATATTGAAATTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCAAATTACAAAGCAATCCAAGGAGGACTACATATTGAAATTTTT  944

seq1  TGATAATATATTTATTAAATGAAGATATGTTCATTTATTGTTCTGTACTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATATATTTATTAAATGAAGATATGTTCATTTATTGTTCTGTACTC  994

seq1  TGACATATCGATCAATTATGGAGCAAAGCTGACTAATGGTAAATGTTTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATATCGATCAATTATGGAGCAAAGCTGACTAATGGTAAATGTTTTC  1044

seq1  CTTATTTTATTGTACTTTGTCACTCTGAATTC  1081
      ||||||||||||||||||||||||||||||||
seq2  CTTATTTTATTGTACTTTGTCACTCTGAATTC  1076


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