BAC Information

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BAC

Clone NameB6Ng01-216F15
Chromosome10 (Build37)
Map Location 125,448,325 - 125,559,022
singlet/doubletdoublet
Overlap geneLrig3
Upstream geneSlc16a7, LOC100042987, EG668313, LOC100042992, LOC668317, LOC100042994
Downstream geneLOC100043547, LOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216F15.bB6Ng01-216F15.g
ACCGA033065GA033066
length9481,082
definitionB6Ng01-216F15.b B6Ng01-216F15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,448,325 - 125,449,267)(125,557,918 - 125,559,022)
sequence
gaattctcagggaaagaggatccacctgctctgaggaggaatagggtcct
tttataactgctcggagaataaatctaaacaagaaagcaaaaagaccaac
acatgtgaaaaaacagaacaaaggaactgaagggaatgatagaaaatgga
aagacctcccatgctcagggactggaaaaatgagtatccaggcaaatggc
tatacgatcaggaacagtctacagatgcatggcaacggccacaagattcc
agcgcctgtggcctggagagatggctcagctgttaagagcacttactgct
cctccaaaggacattggtttgcttcccagtggcctagaactgcctgtaat
ttcagctctgggggatcttctcttttatgtttacacacacacacacacta
tcctttcttaaattcttgaaaagcacttcttttttttttttttgatggta
aaaaaagatagacaaattgcaaattggtcaaatttcgtttctctgaggac
cgtcctgtttccttcacattgtgactgttcttgggcactgaatgtcccca
gttggcatctcctgcatagtgtctgaggcttaaagactacagctgaaaag
ctgatgccatccctactgtaggtgccttagatatcagccaatcaagggag
ggagtgtggtgtagaagcatccccgcccagacccattcattccctccatg
cacaggcagtgccaacgctgcccagagaggtggtttaaaggaacatacgc
atgctcggtgcatgccacggactctgctttgctgctggctcttctcggca
ttttatgtgtagcgcgagcccgtactgagtatttgtgtttgctcgatatc
agactgtatggttgggaaggaagtgtgcttcttttcagcttcagagttag
tcactggtgagacaaatgcctcgtgggggaggtgtggttggaggacag
gaattcctctcctgcctggggaaggctgttgatttattgagaaatcattg
aataaatctcggagtaggttttaaacaacaactttccagacacggtgttg
ctgtcagctcgttttacagcctgcacataaaccaagtgtgtgaccatgct
gctgaagttgaaatcatttccggctgctaacaggagctgttctagttggc
tctcggtttccaaggggcttacatgcagctcagggctttacatttcgtat
tttgttagtacattgctgaatgtaagactcagtttacagacgtgcaaagc
attcagagttggggatataattctcagacagaaaaggcaactgagaggtt
tagataccctagatacaacttttctatactaatgggagtattcttggcct
ctctaacaaagacgactgcgtaacttagtccgaaatagaaatgggtcagg
atcttgacatacctgaacttcttgcagtctgatcaaagatatgcctctga
cttttcagttgagttgtctgtctgtccctgcctacatcagtaagtccagc
tctttccttgaaggaaatgccttctctaccactgggcctccacctccagt
ccccagagctcagctctgtctccagacaccagtgaagctggccaggaaag
tagtagttatgtgagacctcaggaaaggagccactgtagtctggttcctt
tcgtgtgtcgcttgtccctgaaccttagcccacccctggcctaccagaga
aaacattgaaaggcagactgctttgactggatcacacatgagtttgcagt
tctcaagtggtgttatatcctggtaattaagagtccatgcgctagctagg
agtggtagcatatgccactacttaagataccgaggataatgagttcaagg
ccagctaatgctacaattaaaactgtctcaaagcaacacaacacacacca
aaggaaacaacattggcagaaaacacagcaaaagtatcatactcagtatt
ttggagaaagtcagaaaaatgtcctcttatctgctgaaaatgttgactac
atgcatgttagtatagcatccatgatgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_125448325_125449267
seq2: B6Ng01-216F15.b_45_992

seq1  GAATTCTCAGGGAAAGAGGATCCACCTGCTCTGAGGAGGAATAGGGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGGAAAGAGGATCCACCTGCTCTGAGGAGGAATAGGGTCCT  50

seq1  TTTATAACTGCTCGGAGAATAAATCTAAACAAGAAAGCAAAAAGACCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACTGCTCGGAGAATAAATCTAAACAAGAAAGCAAAAAGACCAAC  100

seq1  ACATGTGAAAAAACAGAACAAAGGAACTGAAGGGAATGATAGAAAATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGAAAAAACAGAACAAAGGAACTGAAGGGAATGATAGAAAATGGA  150

seq1  AAGACCTCCCATGCTCAGGGACTGGAAAAATGAGTATCCAGGCAAATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTCCCATGCTCAGGGACTGGAAAAATGAGTATCCAGGCAAATGGC  200

seq1  TATACGATCAGGAACAGTCTACAGATGCATGGCAACGGCCACAAGATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGATCAGGAACAGTCTACAGATGCATGGCAACGGCCACAAGATTCC  250

seq1  AGCGCCTGTGGCCTGGAGAGATGGCTCAGCTGTTAAGAGCACTTACTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCTGTGGCCTGGAGAGATGGCTCAGCTGTTAAGAGCACTTACTGCT  300

seq1  CCTCCAAAGGACATTGGTTTGCTTCCCAGTGGCCTAGAACTGCCTGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAAGGACATTGGTTTGCTTCCCAGTGGCCTAGAACTGCCTGTAAT  350

seq1  TTCAGCTCTGGGGGATCTTCTCTTTTATGTTTACACACACACACACACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCTGGGGGATCTTCTCTTTTATGTTTACACACACACACACACTA  400

seq1  TCCTTTCTTAAATTCTTGAAAAGCACTTCTTTTTTTTTTTTTTGATGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTAAATTCTTGAAAAGCACTTCTTTTTTTTTTTTTTGATGGTA  450

seq1  AAAAAAGATAGACAAATTGCAAATTGGTCAAATTTCGTTTCTCTGAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGATAGACAAATTGCAAATTGGTCAAATTTCGTTTCTCTGAGGAC  500

seq1  CGTCCTGTTTCCTTCACATTGTGACTGTTCTTGGGCACTGAATGTCCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTGTTTCCTTCACATTGTGACTGTTCTTGGGCACTGAATGTCCCCA  550

seq1  GTTGGCATCTCCTGCATAGTGTCTGAGGCTTAAAGACTACAGCTGAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCATCTCCTGCATAGTGTCTGAGGCTTAAAGACTACAGCTGAAAAG  600

seq1  CTGATGCCATCCCTACTGTAGGTGCCTTAGATATCAGCCAATCAAGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCCATCCCTACTGTAGGTGCCTTAGATATCAGCCAATCAAGGGAG  650

seq1  GGAGTGTGGTGTAGAAGCATCCCCGCCCAGACCCATTCATTCCCTCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGGTGTAGAAGCATCCCCGCCCAGACCCATTCATTCCCTCCATG  700

seq1  CACAGGCAGTGCCAACGCTGCCCAGAGAGGTGGTTTAAAGGAACATACGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCAGTGCCAACGCTGCCCAGAGAGGTGGTTTAAAGGAACATACGC  750

seq1  ATGCTCGGTGCATGCCACGGACTCTGCTTTGCTGCTGGCTCTTCTCGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCGGTGCATGCCACGGACTCTGCTTTGCTGCTGGCTCTTCTCGGCA  800

seq1  TTTTATGTGTAGCGCGAGCCCGTACTGAGTATTTGTGTTTGCTCGATATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTGTAGCGCGAGCCCGTACTGAGTATTTGTGTTTGCTCGATATC  850

seq1  AGACTGTATGGTTGGGAAGGAAGTGTGCTTCTTTTCAGCTTCAGAGTTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTATGGTTGGGAAGGAAGTGTGCTTCTTTTCAGCTTCAGAGTTAG  900

seq1  TCACTGGTGAGACAAATG-CTCGT-GGGGAGG-GTGGT--GAGGACAG  943
      |||||||||||||||||| ||||| ||||||| |||||  ||||||||
seq2  TCACTGGTGAGACAAATGCCTCGTGGGGGAGGTGTGGTTGGAGGACAG  948

seq1: chr10_125557918_125559022
seq2: B6Ng01-216F15.g_63_1144 (reverse)

seq1  ACACACATCATTTGATTGCTTATAACTAACATGCATTGGTAGTCACAACC  50
      ||||||||||  ||  ||| ||| ||||||||||||  ||||||   | |
seq2  ACACACATCA--TGGATGC-TAT-ACTAACATGCAT--GTAGTC---AAC  41

seq1  TTTTTCAGCAGATAAAGAGGGACATTTTTTTTCCCGACTTTTCTCAAAAT  100
       |||||||||||| |||| ||||||||||    | ||||||   ||||||
seq2  ATTTTCAGCAGAT-AAGA-GGACATTTTT----CTGACTTTCTCCAAAAT  85

seq1  ACTTGAGTATTGATACTTTTGCTGTGTTTTCTTGCCAATGTTGTTTCCTT  150
      || |||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  AC-TGAGTA-TGATACTTTTGCTGTGTTTTC-TGCCAATGTTGTTTCCTT  132

seq1  TGGGTGTTGTTGTTGTTGTTGCTTTGAGACAGTTTTAATTTGTAGCATTA  200
      | |||||   ||||| |||||||||||||||||||||| |||||||||||
seq2  T-GGTGT--GTGTTG-TGTTGCTTTGAGACAGTTTTAA-TTGTAGCATTA  177

seq1  GCTGGCCTTGAACTCATTATCCTCGGTATCTTAAGTAGTGGGCATATGCT  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCTGGCCTTGAACTCATTATCCTCGGTATCTTAAGTAGT-GGCATATGCT  226

seq1  ACCACTCCTAGCTAGCGCATGGACTCTTAATTACCAGGATATAACACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCCTAGCTAGCGCATGGACTCTTAATTACCAGGATATAACACCAC  276

seq1  TTGAGAACTGCAAACTCATGTGTGATCCAGTCAAAGCAGTCTGCC-TTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTGAGAACTGCAAACTCATGTGTGATCCAGTCAAAGCAGTCTGCCTTTCA  326

seq1  ATGTTTTCTCTGGTAGGCCAGGGGTGGGCTAAGGTTCAGGGACAAGCGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCTCTGGTAGGCCAGGGGTGGGCTAAGGTTCAGGGACAAGCGAC  376

seq1  ACACGAAAGGAACCAGACTACAGTGGCTCCTTTCCTGAGGTCTCACATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAAAGGAACCAGACTACAGTGGCTCCTTTCCTGAGGTCTCACATAA  426

seq1  CTACTACTTTCCTGGCCAGCTTCACTGGTGTCTGGAGACAGAGCTGAGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACTTTCCTGGCCAGCTTCACTGGTGTCTGGAGACAGAGCTGAGCT  476

seq1  CTGGGGACTGGAGGTGGAGGCCCAGTGGTAGAGAAGGCATTTCCTTCAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGACTGGAGGTGGAGGCCCAGTGGTAGAGAAGGCATTTCCTTCAAG  526

seq1  GAAAGAGCTGGACTTACTGATGTAGGCAGGGACAGACAGACAACTCAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGCTGGACTTACTGATGTAGGCAGGGACAGACAGACAACTCAACT  576

seq1  GAAAAGTCAGAGGCATATCTTTGATCAGACTGCAAGAAGTTCAGGTATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCAGAGGCATATCTTTGATCAGACTGCAAGAAGTTCAGGTATGT  626

seq1  CAAGATCCTGACCCATTTCTATTTCGGACTAAGTTACGCAGTCGTCTTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCCTGACCCATTTCTATTTCGGACTAAGTTACGCAGTCGTCTTTG  676

seq1  TTAGAGAGGCCAAGAATACTCCCATTAGTATAGAAAAGTTGTATCTAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAGGCCAAGAATACTCCCATTAGTATAGAAAAGTTGTATCTAGGG  726

seq1  TATCTAAACCTCTCAGTTGCCTTTTCTGTCTGAGAATTATATCCCCAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAACCTCTCAGTTGCCTTTTCTGTCTGAGAATTATATCCCCAACT  776

seq1  CTGAATGCTTTGCACGTCTGTAAACTGAGTCTTACATTCAGCAATGTACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGCTTTGCACGTCTGTAAACTGAGTCTTACATTCAGCAATGTACT  826

seq1  AACAAAATACGAAATGTAAAGCCCTGAGCTGCATGTAAGCCCCTTGGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATACGAAATGTAAAGCCCTGAGCTGCATGTAAGCCCCTTGGAAA  876

seq1  CCGAGAGCCAACTAGAACAGCTCCTGTTAGCAGCCGGAAATGATTTCAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAGCCAACTAGAACAGCTCCTGTTAGCAGCCGGAAATGATTTCAAC  926

seq1  TTCAGCAGCATGGTCACACACTTGGTTTATGTGCAGGCTGTAAAACGAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGCATGGTCACACACTTGGTTTATGTGCAGGCTGTAAAACGAGC  976

seq1  TGACAGCAACACCGTGTCTGGAAAGTTGTTGTTTAAAACCTACTCCGAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCAACACCGTGTCTGGAAAGTTGTTGTTTAAAACCTACTCCGAGA  1026

seq1  TTTATTCAATGATTTCTCAATAAATCAACAGCCTTCCCCAGGCAGGAGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAATGATTTCTCAATAAATCAACAGCCTTCCCCAGGCAGGAGAG  1076

seq1  GAATTC  1105
      ||||||
seq2  GAATTC  1082