BAC Information

Click to search

BAC

Clone NameB6Ng01-216N11
Chromosome10 (Build37)
Map Location 46,377,724 - 46,494,202
singlet/doubletdoublet
Overlap genenone
Upstream geneHace1, LOC664781
Downstream geneLOC100041632, LOC668252, LOC100042387, LOC100041663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216N11.bB6Ng01-216N11.g
ACCGA033425GA033426
length1,104946
definitionB6Ng01-216N11.b B6Ng01-216N11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,377,724 - 46,378,835)(46,493,252 - 46,494,202)
sequence
gaattctcatattcatatgaaaaagaaaaaaataggctagctaaagcagt
tctgaacaattaaaaaaaaattctggagatatcaccatggtctcaggtat
cacatcaggctttcttttcaaccctcaaatttcagttatgactctcttaa
ttgagcccacatcattctacttctatttcccaactacttacttgctcctc
ataatgctccccagagcctctgagtgttggaggttatcttagaagtggtc
tcaggcatggtatgcctgctcattcattatggcatcagactggtggtcat
ctgagactagctccatttctgggtcccataacacccatctgatggtcatt
gtgagcacacttctcacctgggccaccatagtgaccccttgtacaggttg
tgtgtctcaggctcactcctgcccagggtgtactgtcccaggtcaggttc
ttctcatctctggattgctccttgtccaggccttcttcatgctaaattgt
agtagtttcatgctggctgcctgtccaggcacacagtagctggtttggtg
ctcccttcaggctggcttttttttttttttttttttttttttcttcagga
actaattgttcggatattcatagattggaacattgagcaaagacatagcc
tctctcctttctgccacctattgatgcccatgtgacacagcatccacact
ggcaacgcctttaagggaaaggtatatgaattttcaattcattgttggat
tcaacttgaaagtgtttttataggaggttctgtactactttttagtgtgt
tcttatctgatttttgtatcaagcttaataatttcctccaagaagaagtt
ttggacatttactttatctttctggttttataaaatagtttgagcaaaag
tgctttgggcttattaaatgtctgggaaaaactaggtagtggaataatat
ctagcacttggatgtcattcgctagatttctttcacattttcaatcacat
tgctatgttgtactatgttcggaacttccaaaccccatggactaactaac
aaacgatggcttcgattctggacctggtcaataagattgtttttccccct
gggt

gaattcagtcttccccataaagacagtttttatttggaaccaaggacagc
taaagagcagaccctctgtgaaaatagtacactatgcaatgctctcagct
gcactgcagtgaacatgaccaacaccttgtgtgagttcctactttgtagc
tgctgatactctggagtctagaagggactttatcaggtcaactggacaat
gaatgtcttcaatagttatagaaaagaaggatcctagaatgaaagactat
gaaagaggctctctgtgcccaaatattggaaaatcatagaaatgatgcaa
aatgcccatgctagaaatagattctctaggagaaaaataaataaggtcct
gggtttttggaaatcagtctagtcacaacagagtatgggatcttttgtat
catatgctgttttctaactaattggctatttgattacattatactgaaca
aattgtaaacaacatcaccctatacatttccataaatccttaagtaaagc
aggagaagagtgctagaaaaatccacctctaggtgagccttcatgtaact
ttgcagccacacatgtctttcctgcatacatttatatttctctcctctat
caaatccatgtttcagatcatataaagctgacattttgggaaagatgaat
tccaatgatgaaaaaggcaaatatttctttttttgggaaatgattgttta
tttcccaaatgagtaatagtgaatgttgtcaaggatagcattagatctca
gggatggagaagatgtactctccatcaaacctgaaccatctaagaaactc
agtgatataaaggctaactctatctgggacacttgatctacggtgtgttt
tgtttgtttgtttgttttgtttgctttgttagtttacctggaaatgcttt
tctgtttgttgtcttacaaatccttcctctgtgtgtctttaataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_46377724_46378835
seq2: B6Ng01-216N11.b_51_1154

seq1  GAATTCTCATATTCATATGAAAAAGAAAAAAATAGGCTAGCTAAAGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATATTCATATGAAAAAGAAAAAAATAGGCTAGCTAAAGCAGT  50

seq1  TCTGAACAATTAAAAAAAAATTCTGGAGATATCACCATGGTCTCAGGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACAATTAAAAAAAAATTCTGGAGATATCACCATGGTCTCAGGTAT  100

seq1  CACATCAGGCTTTCTTTTCAACCCTCAAATTTCAGTTATGACTCTCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGGCTTTCTTTTCAACCCTCAAATTTCAGTTATGACTCTCTTAA  150

seq1  TTGAGCCCACATCATTCTACTTCTATTTCCCAACTACTTACTTGCTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCCACATCATTCTACTTCTATTTCCCAACTACTTACTTGCTCCTC  200

seq1  ATAATGCTCCCCAGAGCCTCTGAGTGTTGGAGGTTATCTTAGAAGTGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCTCCCCAGAGCCTCTGAGTGTTGGAGGTTATCTTAGAAGTGGTC  250

seq1  TCAGGCATGGTATGCCTGCTCATTCATTATGGCATCAGACTGGTGGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCATGGTATGCCTGCTCATTCATTATGGCATCAGACTGGTGGTCAT  300

seq1  CTGAGACTAGCTCCATTTCTGGGTCCCATAACACCCATCTGATGGTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACTAGCTCCATTTCTGGGTCCCATAACACCCATCTGATGGTCATT  350

seq1  GTGAGCACACTTCTCACCTGGGCCACCATAGTGACCCCTTGTACAGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCACACTTCTCACCTGGGCCACCATAGTGACCCCTTGTACAGGTTG  400

seq1  TGTGTCTCAGGCTCACTCCTGCCCAGGGTGTACTGTCCCAGGTCAGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCAGGCTCACTCCTGCCCAGGGTGTACTGTCCCAGGTCAGGTTC  450

seq1  TTCTCATCTCTGGATTGCTCCTTGTCCAGGCCTTCTTCATGCTAAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATCTCTGGATTGCTCCTTGTCCAGGCCTTCTTCATGCTAAATTGT  500

seq1  AGTAGTTTCATGCTGGCTGCCTGTCCAGGCACACAGTAGCTGGTTTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTTCATGCTGGCTGCCTGTCCAGGCACACAGTAGCTGGTTTGGTG  550

seq1  CTCCCTTCAGGCTGGCTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCAGGCTGGCTTTTTTTTTTTTTTTTTTTTTTTTTTCTTCAGGA  600

seq1  ACTAATTGTTCGGATATTCATAGATTGGAACATTGAGCAAAGACATAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTGTTCGGATATTCATAGATTGGAACATTGAGCAAAGACATAGCC  650

seq1  TCTCTCCTTTCTGCCACCTATTGATGCCCATGTGACACAGCATCCACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTTTCTGCCACCTATTGATGCCCATGTGACACAGCATCCACACT  700

seq1  GGCAACGCCTTTAAGGGAAAGGTATATGAATTTTCAATTCATTGTTGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACGCCTTTAAGGGAAAGGTATATGAATTTTCAATTCATTGTTGGAT  750

seq1  TCAACTTGAAAGTG-TTTTATAGGAGGTTCTGTACTACTTTTTAGTGTGT  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCAACTTGAAAGTGTTTTTATAGGAGGTTCTGTACTACTTTTTAGTGTGT  800

seq1  TCTTATCTGATTTTTGTATCAAGC-TAATAA-TTCCTCCAAGAAGAAG-T  846
      |||||||||||||||||||||||| |||||| |||||||||||||||| |
seq2  TCTTATCTGATTTTTGTATCAAGCTTAATAATTTCCTCCAAGAAGAAGTT  850

seq1  TTGGACATTTACTTTATCTTTCT-GTTTTATAAAATAGTTTGAGCAAAAG  895
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGGACATTTACTTTATCTTTCTGGTTTTATAAAATAGTTTGAGCAAAAG  900

seq1  TGCTTTGGGCTTATTAAATGTCT-GGAAAAATTAAGTAGT-GAAT-ATAT  942
      ||||||||||||||||||||||| ||||||| || ||||| |||| ||||
seq2  TGCTTTGGGCTTATTAAATGTCTGGGAAAAACTAGGTAGTGGAATAATAT  950

seq1  CTAGCAC-TGGATGTTCATTCGCTAGAATTTCTTTCACATTTTCAATCAC  991
      ||||||| |||||| ||||||||||| |||||||||||||||||||||||
seq2  CTAGCACTTGGATG-TCATTCGCTAG-ATTTCTTTCACATTTTCAATCAC  998

seq1  ATTGCTTATGTTTGTACTTATGTTCTGAACATACAATACCCCATGGAACA  1041
      ||||| |||| |||||| ||||||| |||| | ||| ||||||||| || 
seq2  ATTGC-TATG-TTGTAC-TATGTTCGGAACTTCCAA-ACCCCATGG-ACT  1043

seq1  TACTAACAAACAGAAGGGCTTTGGTAGTTTTGAACCTGTTATATAAGATT  1091
       ||||||||||   | ||||| |    || || ||||| |  ||||||||
seq2  AACTAACAAAC--GATGGCTTCG---ATTCTGGACCTGGTCAATAAGATT  1088

seq1  GTTTTTTTCCCCCCTTTGGGT  1112
      ||||||   |||||  |||||
seq2  GTTTTT---CCCCC--TGGGT  1104


seq1: chr10_46493252_46494202
seq2: B6Ng01-216N11.g_67_1012 (reverse)

seq1  TCTATT-AAGACACACAGA-GAAGGATTTGTAAAGACAACAAACAGAAAA  48
      |||||| |||||||||||| ||||||||||| ||||||||||||||||||
seq2  TCTATTAAAGACACACAGAGGAAGGATTTGT-AAGACAACAAACAGAAAA  49

seq1  GCATTCACAGATAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAA  98
      |||||  ||| ||||    |||||| | ||||||||| |||||||   ||
seq2  GCATTTCCAGGTAAA--CTAACAAAGC-AAACAAAAC-AAACAAA--CAA  93

seq1  ACAAAACACACCGTAGATCAAGTGTCCCAGATAGAGTTAGCCTTTATATC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACACACCGTAGATCAAGTGTCCCAGATAGAGTTAGCCTTTATATC  143

seq1  ACTGAGTTTCTTAGATGGTTCAGGTTTGATGGAGAGTACATCTTCTCCAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTTTCTTAGATGGTTCAGGTTTGATGGAGAGTACATCTTCTCCAT  193

seq1  CCCTGAGATCTAATGCTATCCTTGACAACATTCACTATTACTCATTTGGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGATCTAATGCTATCCTTGACAACATTCACTATTACTCATTTGGG  243

seq1  AAATAAACAATCATTTCCCAAAAAAAGAAATATTTGCCTTTTTCATCATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACAATCATTTCCCAAAAAAAGAAATATTTGCCTTTTTCATCATT  293

seq1  GGAATTCATCTTTCCCAAAATGTCAGCTTTATATGATCTGAAACATGGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCATCTTTCCCAAAATGTCAGCTTTATATGATCTGAAACATGGAT  343

seq1  TTGATAGAGGAGAGAAATATAAATGTATGCAGGAAAGACATGTGTGGCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGAGGAGAGAAATATAAATGTATGCAGGAAAGACATGTGTGGCTG  393

seq1  CAAAGTTACATGAAGGCTCACCTAGAGGTGGATTTTTCTAGCACTCTTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTACATGAAGGCTCACCTAGAGGTGGATTTTTCTAGCACTCTTCT  443

seq1  CCTGCTTTACTTAAGGATTTATGGAAATGTATAGGGTGATGTTGTTTACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTACTTAAGGATTTATGGAAATGTATAGGGTGATGTTGTTTACA  493

seq1  ATTTGTTCAGTATAATGTAATCAAATAGCCAATTAGTTAGAAAACAGCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCAGTATAATGTAATCAAATAGCCAATTAGTTAGAAAACAGCAT  543

seq1  ATGATACAAAAGATCCCATACTCTGTTGTGACTAGACTGATTTCCAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACAAAAGATCCCATACTCTGTTGTGACTAGACTGATTTCCAAAAA  593

seq1  CCCAGGACCTTATTTATTTTTCTCCTAGAGAATCTATTTCTAGCATGGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACCTTATTTATTTTTCTCCTAGAGAATCTATTTCTAGCATGGGC  643

seq1  ATTTTGCATCATTTCTATGATTTTCCAATATTTGGGCACAGAGAGCCTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCATCATTTCTATGATTTTCCAATATTTGGGCACAGAGAGCCTCT  693

seq1  TTCATAGTCTTTCATTCTAGGATCCTTCTTTTCTATAACTATTGAAGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTCTTTCATTCTAGGATCCTTCTTTTCTATAACTATTGAAGACA  743

seq1  TTCATTGTCCAGTTGACCTGATAAAGTCCCTTCTAGACTCCAGAGTATCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGTCCAGTTGACCTGATAAAGTCCCTTCTAGACTCCAGAGTATCA  793

seq1  GCAGCTACAAAGTAGGAACTCACACAAGGTGTTGGTCATGTTCACTGCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTACAAAGTAGGAACTCACACAAGGTGTTGGTCATGTTCACTGCAG  843

seq1  TGCAGCTGAGAGCATTGCATAGTGTACTATTTTCACAGAGGGTCTGCTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTGAGAGCATTGCATAGTGTACTATTTTCACAGAGGGTCTGCTCT  893

seq1  TTAGCTGTCCTTGGTTCCAAATAAAAACTGTCTTTATGGGGAAGACTGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGTCCTTGGTTCCAAATAAAAACTGTCTTTATGGGGAAGACTGAA  943

seq1  TTC  951
      |||
seq2  TTC  946


| Home | SequenceCutter | Blast | Download |