BAC Information

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BAC

Clone NameB6Ng01-218M17
Chromosome10 (Build37)
Map Location 28,508,994 - 28,596,246
singlet/doubletdoublet
Overlap geneE430004N04Rik
Upstream geneLOC100040961, LOC100040401, Ptprk
Downstream gene4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218M17.bB6Ng01-218M17.g
ACCGA034830GA034831
length1,150973
definitionB6Ng01-218M17.b B6Ng01-218M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,508,994 - 28,510,151)(28,595,274 - 28,596,246)
sequence
tttcttgttctttttgaaataattagacgtaagggttttgttttgttttt
taatgttttacattagggagcatcaatttaaaacaagcctctaagtcttg
ggattttacatggactattgcttaaaatttggagaacaatttgtgagggt
tacttagaattcaatattcagactcatttaactcattaaaatgcctgttt
attttcatagaaaagagtactaaatgctccattatatgggttcactttca
ctttcctaatgggccattaactttactagatcatttcttgcattgttaaa
taatagggcagatgtatggacagcttaagagtaatactctaaaatgtact
aagtattgcccaaatctatctgtggcaggtgccaccggtcagttaagaac
actatgaattcatctaagatgtttgaaaattagtaatctatggggacagg
tcacaagaactagatgcagttgagttcttttccatggcaggattaccaac
tgttttcttgggttgacagtatctcagcaataacaagagtcatgactgga
aacctgaagacgacgaagcataaaatggggcacgagatccaaagacagga
gaaatgcaccgaggcttaccacttcctcaatataacattaatagatggaa
gataatatacagaatctaaacataggtgggaagttgtagggattgttgat
gacataatgtgaaaataaaatctttacattccatgcaactggagtttttg
ttagacagaaacaatgttataaagtggccgaataaacaaatccatgcctc
taatgtgtcctgaagaggaatgatgtagggtagattcctgctcagaagtt
acgctttctgtgtcagaactcatttcagatagcttggaagaacatagact
ccatggagtttcaacggtcatggatatttatgactatagcttttgagtac
cacacaggagaaatgtaacttctattatctgaggaaagggcctatacaga
gagaaaataacctttggttgaagatgagatattcacatcttcagaagact
attagctgggcccagaaatcttgcatttcatgaactcttgtttgtcataa
atgcctgtgtctacttggtccttgagattctggactctgtggacaaaaac


gaattcagcacatgccaaggagtttcttagcatctaaaattagagcaaag
tagaatttaaaaaaaattcctgtaatcatggtgcccacctgcgttgcagg
tatctaataaccaaaatgtataaagaaagcatatgctatcttgggtagtc
tgaaagcaagagacagtgtcaggtaagaggttgtcatttttggtaaggtt
gctgtggaaaagaccaccaaaatagctcaaggctggtctgcaggaagagc
cagggtaatttctggacaaagaatatgactggaatttctcttaagggtgt
gagaagtaggaattcaatggatcataaacagaggtggtgggagacaggaa
tgtccttgtggggttttcaaggcaggatttctgagattgacattgggttt
agcatcttgcaattgtctgtttgattgagagtagacatcatggaacagtg
gtagaagatgaattagcctattcaagaaccctggtgattagtgtgctagt
ataattgcaggcatatcctaccacattgatcaacagcctggacaatacag
tcagagtctgttacaggaggaaaaaagtcctgaaagagtggttgatagca
gatatttgcattaagatggtagcaatggttatggaagagaaacgagcatg
ttctaaagtgtagagagagaaaatagaatttgttgatgcagtaggtgcaa
tgagtgtatgagaataaggaaaggttgctcttgcttcttctctgtatcac
tgttcccaatccaataggcttcctagacatctcctgaatcagaatcacaa
gtatagcatcttcaagtggattattggtataataaaaaacaaggagttat
tttctagagcacacactagtaaaccttttctttaaagtgccagatactaa
atatctgccacagatactaaatatctgccacagatactcagctttgccca
tatagtgtgtgtagtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_28508994_28510151
seq2: B6Ng01-218M17.b_59_1208

seq1  TTTCTTGTTCTTTTTGAAATAATTAGACGTAAGGGTTTTGTTTTGTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTTCTTTTTGAAATAATTAGACGTAAGGGTTTTGTTTTGTTTTT  50

seq1  TAATGTTTTACATTAGGGAGCATCAATTTAAAACAAGCCTCTAAGTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTTACATTAGGGAGCATCAATTTAAAACAAGCCTCTAAGTCTTG  100

seq1  GGATTTTACATGGACTATTGCTTAAAATTTGGAGAACAATTTGTGAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTACATGGACTATTGCTTAAAATTTGGAGAACAATTTGTGAGGGT  150

seq1  TACTTAGAATTCAATATTCAGACTCATTTAACTCATTAAAATGCCTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGAATTCAATATTCAGACTCATTTAACTCATTAAAATGCCTGTTT  200

seq1  ATTTTCATAGAAAAGAGTACTAAATGCTCCATTATATGGGTTCACTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATAGAAAAGAGTACTAAATGCTCCATTATATGGGTTCACTTTCA  250

seq1  CTTTCCTAATGGGCCATTAACTTTACTAGATCATTTCTTGCATTGTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTAATGGGCCATTAACTTTACTAGATCATTTCTTGCATTGTTAAA  300

seq1  TAATAGGGCAGATGTATGGACAGCTTAAGAGTAATACTCTAAAATGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGGCAGATGTATGGACAGCTTAAGAGTAATACTCTAAAATGTACT  350

seq1  AAGTATTGCCCAAATCTATCTGTGGCAGGTGCCACCGGTCAGTTAAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTGCCCAAATCTATCTGTGGCAGGTGCCACCGGTCAGTTAAGAAC  400

seq1  ACTATGAATTCATCTAAGATGTTTGAAAATTAGTAATCTATGGGGACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGAATTCATCTAAGATGTTTGAAAATTAGTAATCTATGGGGACAGG  450

seq1  TCACAAGAACTAGATGCAGTTGAGTTCTTTTCCATGGCAGGATTACCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGAACTAGATGCAGTTGAGTTCTTTTCCATGGCAGGATTACCAAC  500

seq1  TGTTTTCTTGGGTTGACAGTATCTCAGCAATAACAAGAGTCATGACTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTGGGTTGACAGTATCTCAGCAATAACAAGAGTCATGACTGGA  550

seq1  AACCTGAAGACGACGAAGCATAAAATGGGGCACGAGATCCAAAGACAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAAGACGACGAAGCATAAAATGGGGCACGAGATCCAAAGACAGGA  600

seq1  GAAATGCACCGAGGCTTACCACTTCCTCAATATAACATTAATAGATGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCACCGAGGCTTACCACTTCCTCAATATAACATTAATAGATGGAA  650

seq1  GATAATATACAGAATCTAAACATAGGTGGGAAGTTGTAGGGATTGTTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATATACAGAATCTAAACATAGGTGGGAAGTTGTAGGGATTGTTGAT  700

seq1  GACATAATGTGAAAATAAAATCTTTACATTCCATGCAACTGGAGTTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAATGTGAAAATAAAATCTTTACATTCCATGCAACTGGAGTTTTTG  750

seq1  TTAGACAGAAACAATGTTATAAAGTGGCCGAATAAACAAATCCATGCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAGAAACAATGTTATAAAGTGGCCGAATAAACAAATCCATGCCTC  800

seq1  TAATGTGTCCTGAAGAGGAATGATGTAGGGTAGATTCCTGCTCAGAAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGTCCTGAAGAGGAATGATGTAGGGTAGATTCCTGCTCAGAAGTT  850

seq1  ACGCTTTCTGTGTCAGAACTCATTTCAGATAGCTTGGAAGAACATAGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTTTCTGTGTCAGAACTCATTTCAGATAGCTTGGAAGAACATAGACT  900

seq1  CCATGGAGTTTCAACGGTCATGGATATTTATGACTATAGCTTTTGAGTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGTTTCAACGGTCATGGATATTTATGACTATAGCTTTTGAGTAC  950

seq1  CACACAGGAGAAATGTAACTTCTATATCCTGAGGAAAGGGCCTATAACCA  1000
      |||||||||||||||||||||||||   ||||||||||||||||||  ||
seq2  CACACAGGAGAAATGTAACTTCTATTATCTGAGGAAAGGGCCTATA--CA  998

seq1  GAGAGAAAAATAAACCTTTGGTTGAAAGATGAGATATTTCACATCTTCAG  1050
      |||||||||   |||||||||||| ||||||||||| |||||||||||||
seq2  GAGAGAAAA--TAACCTTTGGTTG-AAGATGAGATA-TTCACATCTTCAG  1044

seq1  -AGACTA-TAGCTGGGCCCAGAAACCTTGCATTTCATGAACTCTGTTTGG  1098
       |||||| |||||||||||||||| |||||||||||||||||||  || |
seq2  AAGACTATTAGCTGGGCCCAGAAATCTTGCATTTCATGAACTCTTGTTTG  1094

seq1  CCATTAAATGCCCCTGTGTCTACTTGTCCCTAGAATTTCTAGACTTCTGT  1148
       || ||||||  ||||||||||||||  ||| ||  |||| ||| |||||
seq2  TCA-TAAATG--CCTGTGTCTACTTGGTCCTTGAGATTCTGGAC-TCTGT  1140

seq1  GGACAAAAAC  1158
      ||||||||||
seq2  GGACAAAAAC  1150


seq1: chr10_28595274_28596246
seq2: B6Ng01-218M17.g_64_1036 (reverse)

seq1  ACACACACACTACACACACTATATGGGCAAAGCTGAGTATCTGTGGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACTACACACACTATATGGGCAAAGCTGAGTATCTGTGGCAGA  50

seq1  TATTTAGTATCTGTGGCAGATATTTAGTATCTGGCACTTTAAAGAAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGTATCTGTGGCAGATATTTAGTATCTGGCACTTTAAAGAAAAGG  100

seq1  TTTACTAGTGTGTGCTCTAGAAAATAACTCCTTGTTTTTTATTATACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAGTGTGTGCTCTAGAAAATAACTCCTTGTTTTTTATTATACCAA  150

seq1  TAATCCACTTGAAGATGCTATACTTGTGATTCTGATTCAGGAGATGTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCACTTGAAGATGCTATACTTGTGATTCTGATTCAGGAGATGTCTA  200

seq1  GGAAGCCTATTGGATTGGGAACAGTGATACAGAGAAGAAGCAAGAGCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCTATTGGATTGGGAACAGTGATACAGAGAAGAAGCAAGAGCAAC  250

seq1  CTTTCCTTATTCTCATACACTCATTGCACCTACTGCATCAACAAATTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTATTCTCATACACTCATTGCACCTACTGCATCAACAAATTCTA  300

seq1  TTTTCTCTCTCTACACTTTAGAACATGCTCGTTTCTCTTCCATAACCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTCTCTACACTTTAGAACATGCTCGTTTCTCTTCCATAACCATT  350

seq1  GCTACCATCTTAATGCAAATATCTGCTATCAACCACTCTTTCAGGACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCATCTTAATGCAAATATCTGCTATCAACCACTCTTTCAGGACTTT  400

seq1  TTTCCTCCTGTAACAGACTCTGACTGTATTGTCCAGGCTGTTGATCAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCTGTAACAGACTCTGACTGTATTGTCCAGGCTGTTGATCAATG  450

seq1  TGGTAGGATATGCCTGCAATTATACTAGCACACTAATCACCAGGGTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGATATGCCTGCAATTATACTAGCACACTAATCACCAGGGTTCTT  500

seq1  GAATAGGCTAATTCATCTTCTACCACTGTTCCATGATGTCTACTCTCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGCTAATTCATCTTCTACCACTGTTCCATGATGTCTACTCTCAAT  550

seq1  CAAACAGACAATTGCAAGATGCTAAACCCAATGTCAATCTCAGAAATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGACAATTGCAAGATGCTAAACCCAATGTCAATCTCAGAAATCCT  600

seq1  GCCTTGAAAACCCCACAAGGACATTCCTGTCTCCCACCACCTCTGTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAAAACCCCACAAGGACATTCCTGTCTCCCACCACCTCTGTTTAT  650

seq1  GATCCATTGAATTCCTACTTCTCACACCCTTAAGAGAAATTCCAGTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATTGAATTCCTACTTCTCACACCCTTAAGAGAAATTCCAGTCATA  700

seq1  TTCTTTGTCCAGAAATTACCCTGGCTCTTCCTGCAGACCAGCCTTGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTCCAGAAATTACCCTGGCTCTTCCTGCAGACCAGCCTTGAGCT  750

seq1  ATTTTGGTGGTCTTTTCCACAGCAACCTTACCAAAAATGACAACCTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTGGTCTTTTCCACAGCAACCTTACCAAAAATGACAACCTCTTA  800

seq1  CCTGACACTGTCTCTTGCTTTCAGACTACCCAAGATAGCATATGCTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACTGTCTCTTGCTTTCAGACTACCCAAGATAGCATATGCTTTCT  850

seq1  TTATACATTTTGGTTATTAGATACCTGCAACGCAGGTGGGCACCATGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACATTTTGGTTATTAGATACCTGCAACGCAGGTGGGCACCATGATT  900

seq1  ACAGGAATTTTTTTTAAATTCTACTTTGCTCTAATTTTAGATGCTAAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATTTTTTTTAAATTCTACTTTGCTCTAATTTTAGATGCTAAGAA  950

seq1  ACTCCTTGGCATGTGCTGAATTC  973
      |||||||||||||||||||||||
seq2  ACTCCTTGGCATGTGCTGAATTC  973


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