BAC Information

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BAC

Clone NameB6Ng01-219H19
Chromosome10 (Build37)
Map Location 61,886,306 - 62,053,055
singlet/doubletdoublet
Overlap geneSupv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21
Upstream geneNodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1
Downstream geneDdx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219H19.bB6Ng01-219H19.g
ACCGA035310GA035311
length1,154905
definitionB6Ng01-219H19.b B6Ng01-219H19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,886,306 - 61,887,464)(62,052,160 - 62,053,055)
sequence
gaattcagtgatggccagcaaggccatccactccaggatgggatatgaga
ttatgacaaggagtgggcagaaggaaaacaaccaaaatcaaagacttcta
cagtgtccagtagcctgggagtgaggcaggcaggcaggcagcctatggga
tttcactgaggcaaaggacagcaaaggctgttcgtgttataaggcgtact
gtgtgttgtctaagcacaggagagcatgtccccttcaggtgtgagttagc
taagtaacctgaggcttaatgactattaaaggtcatgtgcatccagagta
tctagacagaccattttgtagcagctagcccagaatgtctgggtgtgaag
tcattagcagccgctgccatggatggggactttattcatcccatcttata
gatcaggaagctggccctgaagtgcttagtgtcttcctcaaaatcacggt
tgtgaatgcttcagccaggaagcaaccccagaaatgtgattccagagccc
agctcatgaccagtactcaaggccaactctccaacgcaccttccacccag
tgctcatctggtaactactaagactctgcgaggttgaagtttcagcaaag
ctggaaagttaagcacagacagcatttcagtagaccctccccaacaggga
aaggggtttcctgaaaaacaaagtcctgactccactcttccaaacactaa
gaaaacacactgtaaaattcagtcgactagccgggcatggtggcacatgc
ctttaatcccagcacttgggaggcagaggcaggcagatttctgagttcga
ggccagtttggtctataaagtgagttccagaacagccagggatatacaga
gaaaccctgtttcgaaaaacaaaacaaaacaaatcagccaactagatggc
tacaggcacccagtgtctcttggcttccactgaccaggtggcctctggat
aagctgtgtcattctggtcagcttatatcctcaactctgcctgctctctg
cacactcttcccagtgacagcatgactgaccgctgcctgcttggggccct
ttcacggctgccttcttttcacgccaccgagtctgcctaaggcaagtctt
catgaaatgattaacttctttacccagactgacatacagcctccggatgg
ggaa
gaattcatttcacccaaagcgggcctgtacagtagttattgcaggttgta
ttttaagtggatgaaggggcatagcatgcacaggcctttcttgtctgtta
tttggtttcctgcgggggtgtgggaaatagtgtttcctgattacattaga
atgcaatgaaaccagatgctctttggaaaaaggataagcctggaggaggt
agaccatgctgctcctgacttgggtttatttagtttccttttttccctct
aagccatggtggcagcagacagccctgtaaggtctgcgtttacttcctgt
accaagcattagatgtaagagttgagaagggagctgcaatgtccatctag
gctttagtaagtgttcctttctctcttcagcacctggcgattaagtgtca
ctggacagaaagggcagcggtgattggggatgtgatccgagtgtacagtg
gtcatcaagggcgcacgatcatcttctgtgaaaccaagaaggatgcccag
gagctatctcagaacacgtgcataaagcaggttggtccttttcatacctg
aagcctgggtcttcagtgagtttttatcttggactctgctttcattctgg
atttcaattatccagtgacttccatgttgtgttagattaggggaagtgtc
tctgatggtcagggtttatgaaatctaccagtcctgcctcatgggtggtg
gttcactggtaaagctacacctacaaagtaggtatagtctcctttgggtg
atattctcaaccttggagagtgtagttagaaagagttgatgtgggctggg
gaagatgacccagcagttaaagattacttgactgcagaggttctgagttc
caatcccaaacaaccacatggtgggctcacaatccatctgtaatggggat
cgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61886306_61887464
seq2: B6Ng01-219H19.b_45_1198

seq1  GAATTCAGTGATGGCCAGCAAGGCCATCCACTCCAGGATGGGATATGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGATGGCCAGCAAGGCCATCCACTCCAGGATGGGATATGAGA  50

seq1  TTATGACAAGGAGTGGGCAGAAGGAAAACAACCAAAATCAAAGACTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACAAGGAGTGGGCAGAAGGAAAACAACCAAAATCAAAGACTTCTA  100

seq1  CAGTGTCCAGTAGCCTGGGAGTGAGGCAGGCAGGCAGGCAGCCTATGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCAGTAGCCTGGGAGTGAGGCAGGCAGGCAGGCAGCCTATGGGA  150

seq1  TTTCACTGAGGCAAAGGACAGCAAAGGCTGTTCGTGTTATAAGGCGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGAGGCAAAGGACAGCAAAGGCTGTTCGTGTTATAAGGCGTACT  200

seq1  GTGTGTTGTCTAAGCACAGGAGAGCATGTCCCCTTCAGGTGTGAGTTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGTCTAAGCACAGGAGAGCATGTCCCCTTCAGGTGTGAGTTAGC  250

seq1  TAAGTAACCTGAGGCTTAATGACTATTAAAGGTCATGTGCATCCAGAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAACCTGAGGCTTAATGACTATTAAAGGTCATGTGCATCCAGAGTA  300

seq1  TCTAGACAGACCATTTTGTAGCAGCTAGCCCAGAATGTCTGGGTGTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACAGACCATTTTGTAGCAGCTAGCCCAGAATGTCTGGGTGTGAAG  350

seq1  TCATTAGCAGCCGCTGCCATGGATGGGGACTTTATTCATCCCATCTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGCAGCCGCTGCCATGGATGGGGACTTTATTCATCCCATCTTATA  400

seq1  GATCAGGAAGCTGGCCCTGAAGTGCTTAGTGTCTTCCTCAAAATCACGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGAAGCTGGCCCTGAAGTGCTTAGTGTCTTCCTCAAAATCACGGT  450

seq1  TGTGAATGCTTCAGCCAGGAAGCAACCCCAGAAATGTGATTCCAGAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGCTTCAGCCAGGAAGCAACCCCAGAAATGTGATTCCAGAGCCC  500

seq1  AGCTCATGACCAGTACTCAAGGCCAACTCTCCAACGCACCTTCCACCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATGACCAGTACTCAAGGCCAACTCTCCAACGCACCTTCCACCCAG  550

seq1  TGCTCATCTGGTAACTACTAAGACTCTGCGAGGTTGAAGTTTCAGCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATCTGGTAACTACTAAGACTCTGCGAGGTTGAAGTTTCAGCAAAG  600

seq1  CTGGAAAGTTAAGCACAGACAGCATTTCAGTAGACCCTCCCCAACAGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGTTAAGCACAGACAGCATTTCAGTAGACCCTCCCCAACAGGGA  650

seq1  AAGGGGTTTCCTGAAAAACAAAGTCCTGACTCCACTCTTCCAAACACTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTTTCCTGAAAAACAAAGTCCTGACTCCACTCTTCCAAACACTAA  700

seq1  GAAAACACACTGTAAAATTCAGTCGACTAGCCGGGCATGGTGGCACATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACACACTGTAAAATTCAGTCGACTAGCCGGGCATGGTGGCACATGC  750

seq1  CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGA  800

seq1  GGCCAGTTTGGTCTATAAAGTGAGTTCCAGAACAGCCAGGGATATACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTTTGGTCTATAAAGTGAGTTCCAGAACAGCCAGGGATATACAGA  850

seq1  GAAACCCTGTTTCGAAAAAACAAAACAAAACAAATCAGCCAACTAGATGG  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGTTTCG-AAAAACAAAACAAAACAAATCAGCCAACTAGATGG  899

seq1  CTACGGGCACCCAGTGTCTCTTGGCTTCCACTGACCAGGTGGCCTCTGGA  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGCACCCAGTGTCTCTTGGCTTCCACTGACCAGGTGGCCTCTGGA  949

seq1  TAAGCTGTGTCATTCTGGTCAGCTTATATCCTCAACTCTGCCTGCTCTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAAGCTGTGTCATTCTGGTCAGCTTATATCCTCAACTCTGCCTGCTC-TC  998

seq1  TGCACACTCTTCCCAGTGACAGCAATGACTGACCGCTGCCTGCTTGGGG-  1049
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  TGCACACTCTTCCCAGTGACAGC-ATGACTGACCGCTGCCTGCTTGGGGC  1047

seq1  CCTTTCACGGCTGCC-TCTTTTCAACGCACCGGAAGTCTGCCTTAGGCCA  1098
      ||||||||||||||| ||||||||   |||||  ||||||||| |||| |
seq2  CCTTTCACGGCTGCCTTCTTTTCACGCCACCG--AGTCTGCCTAAGGCAA  1095

seq1  GTCTTCATGAAATGATTACATACTTTACCCAGACTGACATAACAGCCTCC  1148
      ||||||||||||||||||  | |||||||||||||||||| ||||||| |
seq2  GTCTTCATGAAATGATTAACTTCTTTACCCAGACTGACAT-ACAGCCT-C  1143

seq1  CTGATGGGGAA  1159
      | |||||||||
seq2  CGGATGGGGAA  1154

seq1: chr10_62052160_62053055
seq2: B6Ng01-219H19.g_66_968 (reverse)

seq1  TCGAT-CCCATTACAGATGG-TTGTGAG-CCACCATGTGGTTG-TTGGGA  46
      ||||| |||||||||||||| ||||||| |||||||||||||| ||||||
seq2  TCGATCCCCATTACAGATGGATTGTGAGCCCACCATGTGGTTGTTTGGGA  50

seq1  TTTGAACTCAGAACCTCTGCAGTC-AGTACTC-TTAACTGCTGGGTCATC  94
      || ||||||||||||||||||||| |||| || |||||||||||||||||
seq2  TTGGAACTCAGAACCTCTGCAGTCAAGTAATCTTTAACTGCTGGGTCATC  100

seq1  -TCCCCAGCCCACATCAACTCTTTCTAACTACACTCTCCAAGGTTGAGAA  143
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGCCCACATCAACTCTTTCTAACTACACTCTCCAAGGTTGAGAA  150

seq1  TATCACCCAAAGGAGACTATACCTACTTTGTAGGTGTAGCTTTACCAGTG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCCAAAGGAGACTATACCTACTTTGTAGGTGTAGCTTTACCAGTG  200

seq1  AACCACCACCCATGAGGCAGGACTGGTAGATTTCATAAACCCTGACCATC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCACCCATGAGGCAGGACTGGTAGATTTCATAAACCCTGACCATC  250

seq1  AGAGACACTTCCCCTAATCTAACACAACATGGAAGTCACTGGATAATTGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTTCCCCTAATCTAACACAACATGGAAGTCACTGGATAATTGA  300

seq1  AATCCAGAATGAAAGCAGAGTCCAAGATAAAAACTCACTGAAGACCCAGG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGAATGAAAGCAGAGTCCAAGATAAAAACTCACTGAAGACCCAGG  350

seq1  CTTCAGGTATGAAAAGGACCAACCTGCTTTATGCACGTGTTCTGAGATAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGTATGAAAAGGACCAACCTGCTTTATGCACGTGTTCTGAGATAG  400

seq1  CTCCTGGGCATCCTTCTTGGTTTCACAGAAGATGATCGTGCGCCCTTGAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGGCATCCTTCTTGGTTTCACAGAAGATGATCGTGCGCCCTTGAT  450

seq1  GACCACTGTACACTCGGATCACATCCCCAATCACCGCTGCCCTTTCTGTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTGTACACTCGGATCACATCCCCAATCACCGCTGCCCTTTCTGTC  500

seq1  CAGTGACACTTAATCGCCAGGTGCTGAAGAGAGAAAGGAACACTTACTAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACACTTAATCGCCAGGTGCTGAAGAGAGAAAGGAACACTTACTAA  550

seq1  AGCCTAGATGGACATTGCAGCTCCCTTCTCAACTCTTACATCTAATGCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGATGGACATTGCAGCTCCCTTCTCAACTCTTACATCTAATGCTT  600

seq1  GGTACAGGAAGTAAACGCAGACCTTACAGGGCTGTCTGCTGCCACCATGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGGAAGTAAACGCAGACCTTACAGGGCTGTCTGCTGCCACCATGG  650

seq1  CTTAGAGGGAAAAAAGGAAACTAAATAAACCCAAGTCAGGAGCAGCATGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGGGAAAAAAGGAAACTAAATAAACCCAAGTCAGGAGCAGCATGG  700

seq1  TCTACCTCCTCCAGGCTTATCCTTTTTCCAAAGAGCATCTGGTTTCATTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTCCTCCAGGCTTATCCTTTTTCCAAAGAGCATCTGGTTTCATTG  750

seq1  CATTCTAATGTAATCAGGAAACACTATTTCCCACACCCCCGCAGGAAACC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAATGTAATCAGGAAACACTATTTCCCACACCCCCGCAGGAAACC  800

seq1  AAATAACAGACAAGAAAGGCCTGTGCATGCTATGCCCCTTCATCCACTTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAGACAAGAAAGGCCTGTGCATGCTATGCCCCTTCATCCACTTA  850

seq1  AAATACAACCTGCAATAACTACTGTACAGGCCCGCTTTGGGTGAAATGAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAACCTGCAATAACTACTGTACAGGCCCGCTTTGGGTGAAATGAA  900

seq1  TTC  896
      |||
seq2  TTC  903