BAC Information

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BAC

Clone NameB6Ng01-219P01
Chromosome10 (Build37)
Map Location 127,136,010 - 127,254,846
singlet/doubletdoublet
Overlap geneMyo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440
Downstream geneAY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219P01.bB6Ng01-219P01.g
ACCGA035632GA035633
length1,012922
definitionB6Ng01-219P01.b B6Ng01-219P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,254,196 - 127,254,846)(127,136,010 - 127,136,932)
sequence
gaattcagtaagaatttaacaaggaagttacctattcagtaaccaattag
cattataaaagacagagccaacagctcagggctagtctgcaagatgttta
ctaggacagaaagcacagtcttatccagatagggtttaccatgagaaaag
ctaggaaatcccactgaaacaggtttcttcactaggccctaagaattcag
gcagaactatagagcataaataaattttatgcctcagcccagccttttct
tttttatattaacaacaggcaggagatgtaacctcccccgcccccagctt
gaaatctggctgatcaggtttgactgttagcacaaggagagcatcagggg
tggagccagccaccctatcggtctgccactcccacagctgctacctgctg
cctagctgttcaggagacacgtggtcacctgaaactggactccaaggatg
atttggtcggaatgggccccttccccttcttcataacccagtgtctcaga
atagtaaaattgaaccttgatcagactgatgtcttgattttattctttct
cacgccgcctagttccctcttctcttccaggttccaagttgcctcccagg
ctagaacccagacatgtgggccactggccagcctcaacagaggaccatgg
ttctatcaggaagaggtgcaataagtgatttattacagttcttccttaag
gtctgggccttggttatcagtggtttatctgtgaatctaaagctgggcca
ctctccctacaagcgggcaagctgcccatgggtctgctctacatttggcc
ttctgttccttctctcctgtgcctgattctgtttaaattatggctgatat
tccttgtcatcctgcctccacttctgtctctgctcctgcgtgtgcagaaa
ctaataggacatttgtcatggggctattagcacacatgtccgcagaatcc
tagctctgaactgcatcttgcaaaatgtagtactagggctttcctgacca
aagttcgtgcag
gaattcactgtaagtgactttgctcttctgtgggttgactcactgtgaaa
gacagatttcttttcaaggccattttttttaaaactgtatttgaatttgg
ggcgagcaaagcaagctcattttcttacccctgcctggtagttggagaag
tgaatgctgagagagctgcttcagacagtgaaggacagacggtgcctctt
ttgtatgctgtgtatccttggcctgcctgcctgcctgcctgcctgggtgg
ctccgctggatgcttctgagcctctgcgtgcccagacactgcttgagtca
gctcagtctcatccctcagaatgagctcatcaaggaccgagggagaagtg
gagtgagctggacactggagccatgagcgctgtgtgccagcaatcatcga
tccagaagctggttccaggagtgggggtcttgatggtattggaaatgcat
tgcttctaatgggtctgacctgagttcataaaacatgactcccgttaatg
ggaacataagaggcagccggcatacaactttacagttttcctttccttat
gagaacatactgatcaaagccaggaaaagtttagcaactttgataacttg
gttaccttgaaatgagaaagagccagttccccacccacattcttgttttc
tcagcagagggtggttttgtctgagatggctctttgggtcccactgttcc
attttaccatatgaccgcccattcaagggcatagccctctgtgaatcagt
tgtgttctctttagcctaccctacttgggtgattgaggtttggtgaataa
aaagacccaaataggccatagaattcccccaggccttgatacccgtgaag
aatttggacgggtacatagttgttgaaggtatgctgagattggatcccag
agttaaatgggaccttagctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_127254196_127254846
seq2: B6Ng01-219P01.b_47_697 (reverse)

seq1  ACCATGGTCCTCTGTTGAGGCTGGCCAGTGGCCCACATGTCTGGGTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGTCCTCTGTTGAGGCTGGCCAGTGGCCCACATGTCTGGGTTCTA  50

seq1  GCCTGGGAGGCAACTTGGAACCTGGAAGAGAAGAGGGAACTAGGCGGCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGAGGCAACTTGGAACCTGGAAGAGAAGAGGGAACTAGGCGGCGT  100

seq1  GAGAAAGAATAAAATCAAGACATCAGTCTGATCAAGGTTCAATTTTACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAATAAAATCAAGACATCAGTCTGATCAAGGTTCAATTTTACTA  150

seq1  TTCTGAGACACTGGGTTATGAAGAAGGGGAAGGGGCCCATTCCGACCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGACACTGGGTTATGAAGAAGGGGAAGGGGCCCATTCCGACCAAA  200

seq1  TCATCCTTGGAGTCCAGTTTCAGGTGACCACGTGTCTCCTGAACAGCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTTGGAGTCCAGTTTCAGGTGACCACGTGTCTCCTGAACAGCTAG  250

seq1  GCAGCAGGTAGCAGCTGTGGGAGTGGCAGACCGATAGGGTGGCTGGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGGTAGCAGCTGTGGGAGTGGCAGACCGATAGGGTGGCTGGCTCC  300

seq1  ACCCCTGATGCTCTCCTTGTGCTAACAGTCAAACCTGATCAGCCAGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGATGCTCTCCTTGTGCTAACAGTCAAACCTGATCAGCCAGATTT  350

seq1  CAAGCTGGGGGCGGGGGAGGTTACATCTCCTGCCTGTTGTTAATATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGGGGGCGGGGGAGGTTACATCTCCTGCCTGTTGTTAATATAAAA  400

seq1  AAGAAAAGGCTGGGCTGAGGCATAAAATTTATTTATGCTCTATAGTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGCTGGGCTGAGGCATAAAATTTATTTATGCTCTATAGTTCTG  450

seq1  CCTGAATTCTTAGGGCCTAGTGAAGAAACCTGTTTCAGTGGGATTTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATTCTTAGGGCCTAGTGAAGAAACCTGTTTCAGTGGGATTTCCTA  500

seq1  GCTTTTCTCATGGTAAACCCTATCTGGATAAGACTGTGCTTTCTGTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTCATGGTAAACCCTATCTGGATAAGACTGTGCTTTCTGTCCTA  550

seq1  GTAAACATCTTGCAGACTAGCCCTGAGCTGTTGGCTCTGTCTTTTATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACATCTTGCAGACTAGCCCTGAGCTGTTGGCTCTGTCTTTTATAAT  600

seq1  GCTAATTGGTTACTGAATAGGTAACTTCCTTGTTAAATTCTTACTGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTGGTTACTGAATAGGTAACTTCCTTGTTAAATTCTTACTGAATT  650

seq1  C  651
      |
seq2  C  651

seq1: chr10_127136010_127136932
seq2: B6Ng01-219P01.g_68_989

seq1  GAATTCACTGTAAGTGACTTTGCTCTTCTGTGGGTTGACTCACTGTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTAAGTGACTTTGCTCTTCTGTGGGTTGACTCACTGTGAAA  50

seq1  GACAGATTTCTTTTCAAGGCCATTTTTTTTAAAACTGTATTTGAATTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATTTCTTTTCAAGGCCATTTTTTTTAAAACTGTATTTGAATTTGG  100

seq1  GGCGAGCAAAGCAAGCTCATTTTCTTACCCCTGCCTGGTAGTTGGAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGCAAAGCAAGCTCATTTTCTTACCCCTGCCTGGTAGTTGGAGAAG  150

seq1  TGAATGCTGAGAGAGCTGCTTCAGACAGTGAAGGACAGACGGTGCCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCTGAGAGAGCTGCTTCAGACAGTGAAGGACAGACGGTGCCTCTT  200

seq1  TTGTATGCTGTGTATCCTTGGCCTGCCTGCCTGCCTGCCTGCCTGGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGCTGTGTATCCTTGGCCTGCCTGCCTGCCTGCCTGCCTGGGTGG  250

seq1  CTCCGCTGGATGCTTCTGAGCCTCTGCGTGCCCAGACACTGCTTGAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCTGGATGCTTCTGAGCCTCTGCGTGCCCAGACACTGCTTGAGTCA  300

seq1  GCTCAGTCTCATCCCTCAGAATGAGCTCATCAAGGACCGAGGGAGAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTCTCATCCCTCAGAATGAGCTCATCAAGGACCGAGGGAGAAGTG  350

seq1  GAGTGAGCTGGACACTGGAGCCATGAGCGCTGTGTGCCAGCAATCATCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGCTGGACACTGGAGCCATGAGCGCTGTGTGCCAGCAATCATCGA  400

seq1  TCCAGAAGCTGGTTCCAGGAGTGGGGGTCTTGATGGTATTGGAAATGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAGCTGGTTCCAGGAGTGGGGGTCTTGATGGTATTGGAAATGCAT  450

seq1  TGCTTCTAATGGGTCTGACCTGAGTTCATAAAACATGACTCCCGTTAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTAATGGGTCTGACCTGAGTTCATAAAACATGACTCCCGTTAATG  500

seq1  GGAACATAAGAGGCAGCCGGCATACAACTTTACAGTTTTCCTTTCCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATAAGAGGCAGCCGGCATACAACTTTACAGTTTTCCTTTCCTTAT  550

seq1  GAGAACATACTGATCAAAGCCAGGAAAAGTTTAGCAACTTTGATAACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATACTGATCAAAGCCAGGAAAAGTTTAGCAACTTTGATAACTTG  600

seq1  GTTACCTTGAAATGAGAAAGAGCCAGTTCCCCACCCACATTCTTGTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTTGAAATGAGAAAGAGCCAGTTCCCCACCCACATTCTTGTTTTC  650

seq1  TCAGCAGAGGGTGGTTTTGTCTGAGATGGCTCTTTGGGTCCCACTGTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGAGGGTGGTTTTGTCTGAGATGGCTCTTTGGGTCCCACTGTTCC  700

seq1  ATTTTACCATATGACCGCCCATTCAAGGGCATAGCCCTCTGTGAATCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACCATATGACCGCCCATTCAAGGGCATAGCCCTCTGTGAATCAGT  750

seq1  TGTGTTCTCTTTAGCCTACCCTACTTGGGTGATTGAGGTTTGGTGAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTCTTTAGCCTACCCTACTTGGGTGATTGAGGTTTGGTGAATAA  800

seq1  AAGGACCCAAATAGGCCAGAGAATTCCCCCAGGCCTTGATACCCGTGAAG  850
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAGACCCAAATAGGCCATAGAATTCCCCCAGGCCTTGATACCCGTGAAG  850

seq1  AATTTGGACGGGTTACATAATTGTTGAAAGGTATGCTGAGA-TGGATCCC  899
      |||||||||||| |||||| |||||| |||||||||||||| ||||||||
seq2  AATTTGGACGGG-TACATAGTTGTTG-AAGGTATGCTGAGATTGGATCCC  898

seq1  AGAGTTAAAATGGACCTTAGCTGT  923
      |||||||||  |||||||||||||
seq2  AGAGTTAAATGGGACCTTAGCTGT  922