BAC Information

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BAC

Clone NameB6Ng01-221C17
Chromosome10 (Build37)
Map Location 48,560,709 - 48,561,794
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042398, LOC546562
Downstream geneLOC100041689, Grik2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221C17.bB6Ng01-221C17.g
ACCGA036532GA036533
length1,1801,077
definitionB6Ng01-221C17.b B6Ng01-221C17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcttccatagttatgtaaaataattgaggatggaaagtccctt
cacggaagccctgaaagtccattatgttaagtcatgtctgcaaagtctgc
attgagttggggaactcaagtggttagagatgctagagcatcttcaaagg
agagcaagagacatgaactagcaccagatcaagagagagaaggcaacaaa
gttggaaaggcagatattaggtcttaaaatcaaaccctggacaaatattc
actgaggtgcctatttaacatatcaaagcaaactcagccatcaggtcctc
ccatcatccctagggctttacttgttataggttccttctgtccaccatat
cttgtctccaacactaaaccttttcttttcttttctttttttgaaatggt
aatatttatgctgtgtcattgtatgttgaaagaatgccatttgactttta
ttttacacagggttacaatgaagagattaacttgaatcacagaagagatt
gaaaattgaaactgtggaggattatgggcaccttttgaagttgggtgaac
tataactttcattataatatgaccagaattctgtagaggccagagaatag
aatgtgatagtttgaataagagtgacttctacaggttcatatgctgaaca
ctggtgctcaattggagaaactgatgggaaatgattaggaggtcttcctt
gttaaggatctgactacttggaatggtcttcaacatttcaataaatcggg
actattcccagtgtctttttctgtgtcttgtagttgtgaatcaagatgta
acctctcagttgttgttgccatcattcatcattctttttttttttttttg
ggtttgttttgttttgtttgtttgttttttgagacaagggtttctctgta
tattcctggctgtcctgaactcacttgtagaccaggctgggctcgaactc
agaaatctgcctgcttctacctcccaagtgctgggattaaaggcgtgcac
cactacgctgggcatcattcatctcttttattctaactatcttgagctac
taacctaatgtgaaagtgttaacccaaattgtaacttggcttttaagtga
gtcctttgctagtgcatagactataagactatcgtactcatctacttcag
agaacaaaacacgttcattccttggcgtta

gaattctctagagttacagaacttatgaaatgtctctttatattgaggga
atttattgtgatggcttatcgtttgtagtctaactaccccaacaatggtc
aactgcaaatgggacgtccaagaatctagtagttgcacagtcccatgaga
ctagttgtttcagctggtcttctgtagaagtatattccaacagatatgct
ggaaagtaaaagcaaacagtgaagaagagtgagtcttccttctaccaatg
tctttatgtatgtctccagcagaaagggtggtccagaataaagatgtgta
ctattattactgaacctggaacttgttttgtcttaagatgacattaccca
tatttttttttctgtttactataagacaatgtacagttgccatttgtaca
atgaatacccatggataaatattaatagtatatcttaaaatccttgtaaa
ataagggttacaggagaagtaatgagacaattttaattataccactgggg
aaagttatgctctagtagctaaatagtagattgtatttcaagtgaagaaa
caatgaaattgtcagccatgaagtgcaagtggagaaaggagacatatgtc
ccatgcactcaaccttgactgtagtcacaattttcaggcactattggatt
ctgaatcaaataactataacaggtacagaaaccagtaaaacacagcttca
atgagggaaaggagactcctgcttctttcctaaggcacatgagtttccaa
acagtatcatcattacactatgtgagcacaatctttttcatttgtcttta
taagttcatatttgatgcaaatcgtttggattactatttgtaatgtctgc
tctctcaagaggggtgcccacactcaactgaggtctggtgaaatcttaat
tgttcagttaagtctagagcctgtggtttgatcagtagagaaaaaggcag
agctgatgttttagagagggaaaagaggagagagatagttgagatgagac
agagttgagaagatgggggaagaagtagatgatcagaaacatgtgaacct
tatggagccataagttactatatttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_48560709_48561794
seq2: B6Ng01-221C17.g_67_1143

seq1  GAATTCTCTAGAGTTACAGAACTTATGAAATGTCTCTTTATATTGAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGAGTTACAGAACTTATGAAATGTCTCTTTATATTGAGGGA  50

seq1  ATTTATTGTGATGGCTTATCGTTTGTAGTCTAACTACCCCAACAATGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGTGATGGCTTATCGTTTGTAGTCTAACTACCCCAACAATGGTC  100

seq1  AACTGCAAATGGGACGTCCAAGAATCTAGTAGTTGCACAGTCCCATGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAAATGGGACGTCCAAGAATCTAGTAGTTGCACAGTCCCATGAGA  150

seq1  CTAGTTGTTTCAGCTGGTCTTCTGTAGAAGTATATTCCAACAGATATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGTTTCAGCTGGTCTTCTGTAGAAGTATATTCCAACAGATATGCT  200

seq1  GGAAAGTAAAAGCAAACAGTGAAGAAGAGTGAGTCTTCCTTCTACCAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTAAAAGCAAACAGTGAAGAAGAGTGAGTCTTCCTTCTACCAATG  250

seq1  TCTTTATGTATGTCTCCAGCAGAAAGGGTGGTCCAGAATAAAGATGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGTATGTCTCCAGCAGAAAGGGTGGTCCAGAATAAAGATGTGTA  300

seq1  CTATTATTACTGAACCTGGAACTTGTTTTGTCTTAAGATGACATTACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTACTGAACCTGGAACTTGTTTTGTCTTAAGATGACATTACCCA  350

seq1  TATTTTTTTTTCTGTTTACTATAAGACAATGTACAGTTGCCATTTGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTTCTGTTTACTATAAGACAATGTACAGTTGCCATTTGTACA  400

seq1  ATGAATACCCATGGATAAATATTAATAGTATATCTTAAAATCCTTGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATACCCATGGATAAATATTAATAGTATATCTTAAAATCCTTGTAAA  450

seq1  ATAAGGGTTACAGGAGAAGTAATGAGACAATTTTAATTATACCACTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGTTACAGGAGAAGTAATGAGACAATTTTAATTATACCACTGGGG  500

seq1  AAAGTTATGCTCTAGTAGCTAAATAGTAGATTGTATTTCAAGTGAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATGCTCTAGTAGCTAAATAGTAGATTGTATTTCAAGTGAAGAAA  550

seq1  CAATGAAATTGTCAGCCATGAAGTGCAAGTGGAGAAAGGAGACATATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAATTGTCAGCCATGAAGTGCAAGTGGAGAAAGGAGACATATGTC  600

seq1  CCATGCACTCAACCTTGACTGTAGTCACAATTTTCAGGCACTATTGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCACTCAACCTTGACTGTAGTCACAATTTTCAGGCACTATTGGATT  650

seq1  CTGAATCAAATAACTATAACAGGTACAGAAACCAGTAAAACACAGCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCAAATAACTATAACAGGTACAGAAACCAGTAAAACACAGCTTCA  700

seq1  ATGAGGGAAAGGAGACTCCTGCTTCTTTCCTAAGGCACATGAGTTTCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGAAAGGAGACTCCTGCTTCTTTCCTAAGGCACATGAGTTTCCAA  750

seq1  ACAGTATCATCATTACACTATGTGAGCACAATCTTTTTCATTTGTCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATCATCATTACACTATGTGAGCACAATCTTTTTCATTTGTCTTTA  800

seq1  TAAGTTCATATTTGATGCAAATCGTTTGGATTACTATTTGTAATGTCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCATATTTGATGCAAATCGTTTGGATTACTATTTGTAATGTCTGC  850

seq1  TCTCTCAAGAGGGGTGCCCACACTCAACTGAGGTCTGGTGAAATCTTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAAGAGGGGTGCCCACACTCAACTGAGGTCTGGTGAAATCTTAAT  900

seq1  TGTTCAGTTAAGTCTAGAGCCTGTGG-TTGATCAGTAGAAGAAAAAGGCA  949
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  TGTTCAGTTAAGTCTAGAGCCTGTGGTTTGATCAGTAG-AGAAAAAGGCA  949

seq1  GAGCTGAATGTTTTAGAGAGGGAAAAGAGGAAGAAGAGATAAGTTGAGAT  999
      |||||| ||||||||||||||||||||||||   |||||| |||||||||
seq2  GAGCTG-ATGTTTTAGAGAGGGAAAAGAGGA--GAGAGAT-AGTTGAGAT  995

seq1  GAGACAGAGGTTGGAAGAAGATGGGGGAAGAAGAAGATGAAACAGAAACA  1049
      |||||||| ||||  |||||||||||||||||| ||||| | ||||||||
seq2  GAGACAGA-GTTG--AGAAGATGGGGGAAGAAGTAGATG-ATCAGAAACA  1041

seq1  TGTGAACCCTA-GGAGCCATAAGTAACTAAGGATTTCA  1086
      |||||||| || |||||||||||| ||||   ||||||
seq2  TGTGAACCTTATGGAGCCATAAGTTACTA--TATTTCA  1077


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