BAC Information

Click to search

BAC

Clone NameB6Ng01-221J11
Chromosome10 (Build37)
Map Location 110,753,706 - 110,754,610
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8, Bbs10
Downstream geneNap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221J11.bB6Ng01-221J11.g
ACCGA036843GA036844
length908894
definitionB6Ng01-221J11.b B6Ng01-221J11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggaccggaactcacacagggcaggaacttggaaggaggagctg
atgcagaaggcatggaggggtgctgcttaatggattgctccccatggctt
gctcagtctgctttcttatagaacccagggacaccagctcagggatgttg
ctacccacaatgggctgggccctcccatatcaatcactaattaaagaaat
tccctacaggcttgcctacagcccaatcttatggaggcatttccttaatt
ggggtttcctcctctcagatgattttagcttgtgtcaacttgatataaaa
atgagccagcatgtgtcccttattgtcatgttcacggccactctgccagg
tgatttgcaattcctggatcataacagatgttatcacccaggaaagctct
actttttccttcatgccttctatcttctgaaaattagaattttaaccaat
cgtctgttaagaaataaaattcatcatctataaccacagatgttcctaac
ttgcactgatagagtttaaggcagtttgcatacatttaatataagacaat
atgctatatatagtatacatttataatatgctatatatttaagggtattc
aattaaggaaaatactgtgtgggttctattattaaaataacccccatgga
ctcttaaagtctagattgggtccaccgagaagctggtctacaagatcctt
gctgacacagtgggtccataagtagtttagagtttctattatgtatcttt
taaggatttgatcatttgctctgaagtttaatgtagtggggaagataaaa
ctaaggaggtagttagagacctattaagcactggactatatcccccactg
ctgtgtgaaatcagaagaggcttgtgtcgggtgttggtggcgcacccctt
taatcccc
gaattcttaaaagaggaaactccaatggctgagcaatgctttaaatgttc
aacatccttagtcatcagggaactgcaaatcaaaactactctgagatttc
accttacaccagtcagaatggctaagatcaataaaacaagtgacagctca
cgctggcgaggatgtggagcaaggggagcactcacccattgaggggagca
ctcacccattgaggggagcactcatccattgaggggagcactcacccatt
gctggtgggactgcagactggcaaatgctcttgggggtatcagtgtgtca
gctccttgggaagatggggatcagtctacttcaggatcaggtatactatc
attgggcacatacagaaaggatgcctcatcctacctcagagacacttgct
caaccatactcattactgctctattcagaacattcagaaactggaaacaa
cctagatgttcctcaacagaagaatggacaaagaaaatgcacatttacac
aatagagtattactcacctgttaaaatatatgaaatcatgagatatgcag
gaaaatggatgggactagagaaaaaaaaatcatcccaagttagcccagat
gcagaaaagagaaatatggtacgtatttgcttttatgtggatattagctg
tggaactctcacagctaatgaacactttcagtaaagtagctggatacaaa
attatctttaaaaaatcagtagtccttctatacaaatgactaaacaaact
gttagcaagctgcaatccacagaaccacagagcttagtcataagagtaat
ggtactaaaggggagagagagcttcctaggaaacagaaatagaataagtt
atgggatggattggggcctgggtggagatctataacaggacgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_110753706_110754610
seq2: B6Ng01-221J11.b_46_952 (reverse)

seq1  GGGATTAAAGGCGTGCGCCACC-ACACCCGGCACAAGCCTCTTCTGATTT  49
      ||||||||||| |||||||||| ||||||| |||||||||||||||||||
seq2  GGGATTAAAGGGGTGCGCCACCAACACCCGACACAAGCCTCTTCTGATTT  50

seq1  CACACAGCAGT-GGGGATATAGTCCAGTGCTTAATAGGTCTCTAACTACC  98
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCAGTGGGGGATATAGTCCAGTGCTTAATAGGTCTCTAACTACC  100

seq1  TCCTTAGTTTTATCTTCCCCACTACATTAAACTTCAGAGCAAATGATCAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGTTTTATCTTCCCCACTACATTAAACTTCAGAGCAAATGATCAA  150

seq1  ATCCTTAAAAGATACATAATAGAAACTCTAAACTACTTATGGACCCACTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAAAAGATACATAATAGAAACTCTAAACTACTTATGGACCCACTG  200

seq1  TGTCAGCAAGGATCTTGTAGACCAGCTTCTCGGTGGACCCAATCTAGACT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCAAGGATCTTGTAGACCAGCTTCTCGGTGGACCCAATCTAGACT  250

seq1  TTAAGAGTCCATGGGGGTTATTTTAATAATAGAACCCACACAGTATTTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTCCATGGGGGTTATTTTAATAATAGAACCCACACAGTATTTTC  300

seq1  CTTAATTGAATACCCTTAAATATATAGCATATTATAAATGTATACTATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTGAATACCCTTAAATATATAGCATATTATAAATGTATACTATAT  350

seq1  ATAGCATATTGTCTTATATTAAATGTATGCAAACTGCCTTAAACTCTATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATATTGTCTTATATTAAATGTATGCAAACTGCCTTAAACTCTATC  400

seq1  AGTGCAAGTTAGGAACATCTGTGGTTATAGATGATGAATTTTATTTCTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAGTTAGGAACATCTGTGGTTATAGATGATGAATTTTATTTCTTA  450

seq1  ACAGACGATTGGTTAAAATTCTAATTTTCAGAAGATAGAAGGCATGAAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACGATTGGTTAAAATTCTAATTTTCAGAAGATAGAAGGCATGAAGG  500

seq1  AAAAAGTAGAGCTTTCCTGGGTGATAACATCTGTTATGATCCAGGAATTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAGAGCTTTCCTGGGTGATAACATCTGTTATGATCCAGGAATTG  550

seq1  CAAATCACCTGGCAGAGTGGCCGTGAACATGACAATAAGGGACACATGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCACCTGGCAGAGTGGCCGTGAACATGACAATAAGGGACACATGCT  600

seq1  GGCTCATTTTTATATCAAGTTGACACAAGCTAAAATCATCTGAGAGGAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATTTTTATATCAAGTTGACACAAGCTAAAATCATCTGAGAGGAGG  650

seq1  AAACCCCAATTAAGGAAATGCCTCCATAAGATTGGGCTGTAGGCAAGCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCAATTAAGGAAATGCCTCCATAAGATTGGGCTGTAGGCAAGCCT  700

seq1  GTAGGGAATTTCTTTAATTAGTGATTGATATGGGAGGGCCCAGCCCATTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGAATTTCTTTAATTAGTGATTGATATGGGAGGGCCCAGCCCATTG  750

seq1  TGGGTAGCAACATCCCTGAGCTGGTGTCCCTGGGTTCTATAAGAAAGCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGCAACATCCCTGAGCTGGTGTCCCTGGGTTCTATAAGAAAGCAG  800

seq1  ACTGAGCAAGCCATGGGGAGCAATCCATTAAGCAGCACCCCTCCATGCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCAAGCCATGGGGAGCAATCCATTAAGCAGCACCCCTCCATGCCT  850

seq1  TCTGCATCAGCTCCTCCTTCCAAGTTCCTGCCCTGTGTGAGTTCCGGTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATCAGCTCCTCCTTCCAAGTTCCTGCCCTGTGTGAGTTCCGGTCC  900

seq1  TGAATTC  905
      |||||||
seq2  TGAATTC  907