BAC Information

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BAC

Clone NameB6Ng01-222I04
Chromosome10 (Build37)
Map Location 31,707,994 - 31,846,519
singlet/doubletdoublet
Overlap geneTcba1
Upstream geneLOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638
Downstream geneEG667761, Trdn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222I04.bB6Ng01-222I04.g
ACCGA037507GA037508
length1,1731,144
definitionB6Ng01-222I04.b B6Ng01-222I04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,707,994 - 31,709,181)(31,845,367 - 31,846,519)
sequence
gaattcagcatctgagactctagatcatcagtgactagatcatgagtgta
taccatctgctaaagaaatcaataaagctaacacatttcaataaagatga
cagtatctttcccctaggttaaaatagcaaattcatatatactggctctc
cattattcaaactctatcttgaagttattgaggtaatctaaatatatctg
taggtgacagaacctgacagatccaaatgtatttcacaaatgttaatcaa
ggttttatttcttcaacattatggaggtgaccactggaagataagtaata
cactattatacttggacctcaggattcatgagaaattgtttttcagatct
tctccattccagaattggaggatgttgagataccttctataaaatattat
aatattttcatataagctatgtattccttttatattttaaatcatctata
gaataatacctaatgcaatttaagtatagccttcgaagtttttactgtct
aatgtctagtcaaaacaaataattacacaataaaatgtttctccaactga
agaaagatgaaaaacttttgaagttaaatatgattgatattttaactaga
cctaagaaatattagacctaaagagcttaaagaagaaaaaacaataggag
aaaagttacaagatagtttagaaagtaatcagaaaatgtatctgcatgta
caacatatgtatgttgtagtgcaaatatatgaatgtgaagatgtagggaa
atgcatatgcatgtggatatatatgtaaatgagtgcatccaaattctccc
tggaacagtcactgtgaggtggcaagttatactatatcaatttgtcagaa
ttatgggccactaaaacagttaaagttactaacttcttagtgaccaagtg
gacataagtcttagtaaattacctattatgtttccccgaaagtcaagttt
acaaaacctaaaaaggccattctggtgacttactgcatgagaaggtgcat
gaaggaaatctcctttgtgatgttaaacagtcccatttggcccataaaga
ctccatatactgatcatctagagacccgctgtacctcagtgtagttggta
gaactcaccaacctgagtcctggagctgccgctggaagtctagatagaac
tcaaggaaccataccagcaacac

gaattccatgctgtacaggaatatgcatgatgttttaattaacagctatt
ctcaaaaatatatttatctttttactcaaaaataactttagtaagcatgt
atttctattgttacacatatgtagaaagtattttgcgttcatacctttct
acaacatattgacaaagaattctagctgcatatttatagtattactaacc
agtaaacttacattgagggtcattccacacatacctatttgtttgatgat
aaaagaatgacttcatgtcaatctaaaactcatgcattctttgagaatct
aaagggagattgttgtatatattctgataaatatgtgttgccaaggacca
cattgtcagtgcaactttaagataatcacagccatcagtataagcttgaa
aacacaaagaataattatacatctcaagtccttgacaagacaaaaaaaat
tacagtttacttaagagttacttccaggaactggttttaatcaggaaatt
tttatctattacaactctggagtatcttagttacagagacaataaatgct
tccttagaacaaatagaagaaggaaaaaaagggctaaaacattttttttt
ctctaagcttagtaaaatctgcttcattcttccctacagcaattctgctg
attgtgccctgagttcaggatatttctcttgagataggaaaagaagtcat
aggtcactttttactatcttccaaagactgcccacacataagagcactaa
aaatagaaagatattgggcgaaaactcagtggacagtctcgagttcccca
gaagactctccatgcagcaggcgccctagcacacccagtatcttgagatc
attggagagtggaatgcaacatctgttccaaacaatcctgaggggctgat
gccagcaggatcagggacaaaggaaacacgcctgaccaatggctggggtc
tttcccattatcgctaggcccacatcttggatatgaactcagcagacagt
cccaagttccttagagaactctccatgcagcagcaccctagcacacccag
atctaggatcactgaggaggagtcagcctccagagagggctctgatcctg
gactcagccataaatagtgccatctgtaaccaggacttcagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_31707994_31709181
seq2: B6Ng01-222I04.b_42_1214

seq1  GAATTCAGCATCTGAGACTCTAGATCATCAGTGACTAGATCATGAGTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATCTGAGACTCTAGATCATCAGTGACTAGATCATGAGTGTA  50

seq1  TACCATCTGCTAAAGAAATCAATAAAGCTAACACATTTCAATAAAGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCTGCTAAAGAAATCAATAAAGCTAACACATTTCAATAAAGATGA  100

seq1  CAGTATCTTTCCCCTAGGTTAAAATAGCAAATTCATATATACTGGCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCTTTCCCCTAGGTTAAAATAGCAAATTCATATATACTGGCTCTC  150

seq1  CATTATTCAAACTCTATCTTGAAGTTATTGAGGTAATCTAAATATATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCAAACTCTATCTTGAAGTTATTGAGGTAATCTAAATATATCTG  200

seq1  TAGGTGACAGAACCTGACAGATCCAAATGTATTTCACAAATGTTAATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGACAGAACCTGACAGATCCAAATGTATTTCACAAATGTTAATCAA  250

seq1  GGTTTTATTTCTTCAACATTATGGAGGTGACCACTGGAAGATAAGTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATTTCTTCAACATTATGGAGGTGACCACTGGAAGATAAGTAATA  300

seq1  CACTATTATACTTGGACCTCAGGATTCATGAGAAATTGTTTTTCAGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTATACTTGGACCTCAGGATTCATGAGAAATTGTTTTTCAGATCT  350

seq1  TCTCCATTCCAGAATTGGAGGATGTTGAGATACCTTCTATAAAATATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTCCAGAATTGGAGGATGTTGAGATACCTTCTATAAAATATTAT  400

seq1  AATATTTTCATATAAGCTATGTATTCCTTTTATATTTTAAATCATCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTCATATAAGCTATGTATTCCTTTTATATTTTAAATCATCTATA  450

seq1  GAATAATACCTAATGCAATTTAAGTATAGCCTTCGAAGTTTTTACTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATACCTAATGCAATTTAAGTATAGCCTTCGAAGTTTTTACTGTCT  500

seq1  AATGTCTAGTCAAAACAAATAATTACACAATAAAATGTTTCTCCAACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTAGTCAAAACAAATAATTACACAATAAAATGTTTCTCCAACTGA  550

seq1  AGAAAGATGAAAAACTTTTGAAGTTAAATATGATTGATATTTTAACTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATGAAAAACTTTTGAAGTTAAATATGATTGATATTTTAACTAGA  600

seq1  CCTAAGAAATATTAGACCTAAAGAGCTTAAAGAAGAAAAAACAATAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAAATATTAGACCTAAAGAGCTTAAAGAAGAAAAAACAATAGGAG  650

seq1  AAAAGTTACAAGATAGTTTAGAAAGTAATCAGAAAATGTATCTGCATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTACAAGATAGTTTAGAAAGTAATCAGAAAATGTATCTGCATGTA  700

seq1  CAACATATGTATGTTGTAGTGCAAATATATGAATGTGAAGATGTAGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATATGTATGTTGTAGTGCAAATATATGAATGTGAAGATGTAGGGAA  750

seq1  ATGCATATGCATGTGGATATATATGTAAATGAGTGCATCCAAATTCTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATGCATGTGGATATATATGTAAATGAGTGCATCCAAATTCTCCC  800

seq1  TGGAACAGTCACTGTGAGGTGGCAAGTTATACTATATCAATTTGTCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAGTCACTGTGAGGTGGCAAGTTATACTATATCAATTTGTCAGAA  850

seq1  TTATGGGCCACTAAAACAGTTAAAGTTACTAACTTCTTAGTGACCAAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGCCACTAAAACAGTTAAAGTTACTAACTTCTTAGTGACCAAGTG  900

seq1  GACATAAGTCTTAGTAAATTACCTATTATGTTTCCCCGAAAGTCAAGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAAGTCTTAGTAAATTACCTATTATGTTTCCCCGAAAGTCAAGTTT  950

seq1  ACAAAACCTAAAAAGGCCATTCTGGTGACTTACTGCATGAGAAGGTGCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCTAAAAAGGCCATTCTGGTGACTTACTGCATGAGAAGGTGCAT  1000

seq1  GAAGGAAATCTCCTTTTGTTGATGTTAAAAACAGTCCCATTTTGGCCCCC  1050
      ||||||||||||||||   |||||||  |||||||||||||| |   |||
seq2  GAAGGAAATCTCCTTT--GTGATGTT--AAACAGTCCCATTTGG---CCC  1043

seq1  ATAAAGACTCCATATACTGATCCATCCTAGAGGACCCGCTGTA-CTCAGT  1099
      ||||||||||||||||||||| ||| ||||| ||||||||||| ||||||
seq2  ATAAAGACTCCATATACTGAT-CAT-CTAGA-GACCCGCTGTACCTCAGT  1090

seq1  GTAGTTGGTAGAACCCCCACCCCCACCCCCCGAGTCCTGGAGCTGCCGCT  1149
      |||||||||||||| | |       |  || |||||||||||||||||||
seq2  GTAGTTGGTAGAACTCAC-------CAACCTGAGTCCTGGAGCTGCCGCT  1133

seq1  GGAAGTCTAG-TAG-ACTC-AGGACCCATCACCCAGCAACAC  1188
      |||||||||| ||| |||| |||| ||||   ||||||||||
seq2  GGAAGTCTAGATAGAACTCAAGGAACCAT--ACCAGCAACAC  1173


seq1: chr10_31845367_31846519
seq2: B6Ng01-222I04.g_71_1214 (reverse)

seq1  TCTCTGAGAGTCCTGGGGTACAAGATGGCACTATTTATTGCCTGAGTCCC  50
      ||||||| |||||| || ||| ||||||||||||||| || |||||| ||
seq2  TCTCTGA-AGTCCT-GGTTAC-AGATGGCACTATTTA-TGGCTGAGT-CC  45

seq1  AGGATCAGAGCCCTCTCTGGAGGCTGACT-CTCCTCAGTGATCCTAAGAT  99
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  AGGATCAGAGCCCTCTCTGGAGGCTGACTCCTCCTCAGTGATCCT-AGAT  94

seq1  CCTGGGTGTGCTAGGGTGCCTGCTGCATGGAGAGTTCTCTAAGGAACTTG  149
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  -CTGGGTGTGCTAGGGTG-CTGCTGCATGGAGAGTTCTCTAAGGAACTTG  142

seq1  GGACTGTCTGCTGAGTTCATATCCAAGATGTGGGCCTAGCGATAATGGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTCTGCTGAGTTCATATCCAAGATGTGGGCCTAGCGATAATGGGA  192

seq1  AAGAACCCCAGCCATTGGTCAGGCGTGTTTCCTTTGTCCCTGATCCTGCT  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAG-ACCCCAGCCATTGGTCAGGCGTGTTTCCTTTGTCCCTGATCCTGCT  241

seq1  GGCATCAGCCCCTCAGGATTGTTTTGGAACAGATGTTGCATTCCACTCTC  299
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCATCAGCCCCTCAGGATTG-TTTGGAACAGATGTTGCATTCCACTCTC  290

seq1  CAATGATCTCAAGATACTGGGTGTGCTAGGGCGCCTGCTGCATGGAGAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATCTCAAGATACTGGGTGTGCTAGGGCGCCTGCTGCATGGAGAGT  340

seq1  CTTCTGGGGAACTCGAGACTGTCCACTGAGTTTTCGCCCAATATCTTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGGGAACTCGAGACTGTCCACTGAGTTTTCGCCCAATATCTTTCT  390

seq1  ATTTTTAGTGCTCTTATGTGTGGGCAGTCTTTGGAAGATAGTAAAAAGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGTGCTCTTATGTGTGGGCAGTCTTTGGAAGATAGTAAAAAGTG  440

seq1  ACCTATGACTTCTTTTCCTATCTCAAGAGAAATATCCTGAACTCAGGGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGACTTCTTTTCCTATCTCAAGAGAAATATCCTGAACTCAGGGCA  490

seq1  CAATCAGCAGAATTGCTGTAGGGAAGAATGAAGCAGATTTTACTAAGCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGCAGAATTGCTGTAGGGAAGAATGAAGCAGATTTTACTAAGCTT  540

seq1  AGAGAAAAAAAAATGTTTTAGCCCTTTTTTTCCTTCTTCTATTTGTTCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAAAAAATGTTTTAGCCCTTTTTTTCCTTCTTCTATTTGTTCTA  590

seq1  AGGAAGCATTTATTGTCTCTGTAACTAAGATACTCCAGAGTTGTAATAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCATTTATTGTCTCTGTAACTAAGATACTCCAGAGTTGTAATAGA  640

seq1  TAAAAATTTCCTGATTAAAACCAGTTCCTGGAAGTAACTCTTAAGTAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTCCTGATTAAAACCAGTTCCTGGAAGTAACTCTTAAGTAAAC  690

seq1  TGTAATTTTTTTTGTCTTGTCAAGGACTTGAGATGTATAATTATTCTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTTTTTTGTCTTGTCAAGGACTTGAGATGTATAATTATTCTTTG  740

seq1  TGTTTTCAAGCTTATACTGATGGCTGTGATTATCTTAAAGTTGCACTGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAAGCTTATACTGATGGCTGTGATTATCTTAAAGTTGCACTGAC  790

seq1  AATGTGGTCCTTGGCAACACATATTTATCAGAATATATACAACAATCTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGTCCTTGGCAACACATATTTATCAGAATATATACAACAATCTCC  840

seq1  CTTTAGATTCTCAAAGAATGCATGAGTTTTAGATTGACATGAAGTCATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGATTCTCAAAGAATGCATGAGTTTTAGATTGACATGAAGTCATTC  890

seq1  TTTTATCATCAAACAAATAGGTATGTGTGGAATGACCCTCAATGTAAGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCATCAAACAAATAGGTATGTGTGGAATGACCCTCAATGTAAGTT  940

seq1  TACTGGTTAGTAATACTATAAATATGCAGCTAGAATTCTTTGTCAATATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTTAGTAATACTATAAATATGCAGCTAGAATTCTTTGTCAATATG  990

seq1  TTGTAGAAAGGTATGAACGCAAAATACTTTCTACATATGTGTAACAATAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAAAGGTATGAACGCAAAATACTTTCTACATATGTGTAACAATAG  1040

seq1  AAATACATGCTTACTAAAGTTATTTTTGAGTAAAAAGATAAATATATTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATGCTTACTAAAGTTATTTTTGAGTAAAAAGATAAATATATTTT  1090

seq1  TGAGAATAGCTGTTAATTAAAACATCATGCATATTCCTGTACAGCATGGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATAGCTGTTAATTAAAACATCATGCATATTCCTGTACAGCATGGA  1140

seq1  ATTC  1153
      ||||
seq2  ATTC  1144


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