BAC Information

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BAC

Clone NameB6Ng01-223A13
Chromosome10 (Build37)
Map Location 91,866,204 - 91,964,742
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041799, LOC667203
Downstream geneLOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223A13.bB6Ng01-223A13.g
ACCGA037890GA037891
length1,109659
definitionB6Ng01-223A13.b B6Ng01-223A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,866,204 - 91,867,310)(91,964,084 - 91,964,742)
sequence
gaattcagctggcatagaagccacacaacaagccaaagttaaatttcctc
ttcttcactaaaccaaaaatctacgtaaatgtagacaggttagctcagtt
cacctaggtttcacctgggcgtcacacctagtgtaccaactggctatgtg
gttgttttgtttctttctgctcgagaaaacagtgttctgctgtgtagctc
agcccagcctgaaactattcatgtagtccaaacccacgaagctcctgcct
gtaaggaggcacgagtcaccatacctgcctttggtctaagtactgcaacc
ccaggcctgacatcccttaacgatagagatggcgttaactatcagagctt
ggctcttgtgtcagtgatcagagcggactgcaatatggttctcagttttc
cacttctcccttttctaaactccctttcaccgtgtgacttcttactttgt
cctcagaaaggcctttagatgtagccaagggatctgctcagatcaacaga
ctaaggcagaaatgatataccagtaatgacttcaagaaatccgtgagcag
catctcttccctcgggtgcctctacctcgcgtgttggtcccgaggggatg
agagctatgtagaaggggaactgcgttgggtaagctgtttccgctaagct
ctgaggcatgtccagctcagaagaataaacaggtttgtacactttgtata
tgacatgtagcaaaggagagatggtctttatccctgcactctgaacgaag
agttctgagactgtcccggacctgaaatccccgtgtgtccatgaagcaga
cgggaaccaagaggaaacgctctagttctcagactcgaagagcggaaggc
aaaacccaccgaattctctgaacctttttcaagcatcaaagactgggagg
gaagaggtgggaaaccaagtacagaagcggcacccagaatccccaaggtt
tgtccatttctatgtagcacgccacaccttttttcttcacaatggcccca
gacactcgagcccttagtttcttacccctgccaatagtctccataacacc
ccacaaatgctacttatggtggatatcagtttccacttagggctaatcca
gggtttttt

gaattcattcctgtgttcaaataagatgaaagtctgcaggtgtggttgga
agaaatattaaagtcgggggtcaaagagtaggtatgaattcacaagcaaa
gggagggagaatgacagtatagacattagcaagaagaaaaaataatgtga
agagttgacctcaccagtgtgggtaagatgggagtaggagccagcaatgg
gcaagtcataaagctttgtttctcaaactgagtcttctgttttcatctgg
atggctttggaaacaaggcaccttctgctcagcaaggggaaagctgggtt
gtaggtgtctgggagttcgaggcagtaggtaggactcaggtgattaagta
gtagaaagaactctttctttctgtctgtctcactgtctctgtctctgtct
ctgtctctgtctctgtctctgtctctctgtctctctgtctctctgtctct
ctgtctctctgtctctctctctctctctctctctctgggtgtgtataggt
gtgtgtgtaatataatattttagaaggcaaaatctacagaggtggaagaa
ttgctgaagctgaatatgttgtaaggacttcctccacgtggttggtatct
ttgcctgcacacaaatgacctatagcaggagaatcaggcttggggggggg
gggagagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_91866204_91867310
seq2: B6Ng01-223A13.b_45_1153

seq1  GAATTCAGCTGGCATAGAAGCCACACAACAAGCCAAAGTTAAATTTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGGCATAGAAGCCACACAACAAGCCAAAGTTAAATTTCCTC  50

seq1  TTCTTCACTAAACCAAAAATCTACGTAAATGTAGACAGGTTAGCTCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACTAAACCAAAAATCTACGTAAATGTAGACAGGTTAGCTCAGTT  100

seq1  CACCTAGGTTTCACCTGGGCGTCACACCTAGTGTACCAACTGGCTATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGGTTTCACCTGGGCGTCACACCTAGTGTACCAACTGGCTATGTG  150

seq1  GTTGTTTTGTTTCTTTCTGCTCGAGAAAACAGTGTTCTGCTGTGTAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTGTTTCTTTCTGCTCGAGAAAACAGTGTTCTGCTGTGTAGCTC  200

seq1  AGCCCAGCCTGAAACTATTCATGTAGTCCAAACCCACGAAGCTCCTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGCCTGAAACTATTCATGTAGTCCAAACCCACGAAGCTCCTGCCT  250

seq1  GTAAGGAGGCACGAGTCACCATACCTGCCTTTGGTCTAAGTACTGCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAGGCACGAGTCACCATACCTGCCTTTGGTCTAAGTACTGCAACC  300

seq1  CCAGGCCTGACATCCCTTAACGATAGAGATGGCGTTAACTATCAGAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCTGACATCCCTTAACGATAGAGATGGCGTTAACTATCAGAGCTT  350

seq1  GGCTCTTGTGTCAGTGATCAGAGCGGACTGCAATATGGTTCTCAGTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTGTGTCAGTGATCAGAGCGGACTGCAATATGGTTCTCAGTTTTC  400

seq1  CACTTCTCCCTTTTCTAAACTCCCTTTCACCGTGTGACTTCTTACTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTCCCTTTTCTAAACTCCCTTTCACCGTGTGACTTCTTACTTTGT  450

seq1  CCTCAGAAAGGCCTTTAGATGTAGCCAAGGGATCTGCTCAGATCAACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAAAGGCCTTTAGATGTAGCCAAGGGATCTGCTCAGATCAACAGA  500

seq1  CTAAGGCAGAAATGATATACCAGTAATGACTTCAAGAAATCCGTGAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCAGAAATGATATACCAGTAATGACTTCAAGAAATCCGTGAGCAG  550

seq1  CATCTCTTCCCTCGGGTGCCTCTACCTCGCGTGTTGGTCCCGAGGGGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTCCCTCGGGTGCCTCTACCTCGCGTGTTGGTCCCGAGGGGATG  600

seq1  AGAGCTATGTAGAAGGGGAACTGCGTTGGGTAAGCTGTTTCCGCTAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTATGTAGAAGGGGAACTGCGTTGGGTAAGCTGTTTCCGCTAAGCT  650

seq1  CTGAGGCATGTCCAGCTCAGAAGAATAAACAGGTTTGTACACTTTGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCATGTCCAGCTCAGAAGAATAAACAGGTTTGTACACTTTGTATA  700

seq1  TGACATGTAGCAAAGGAGAGATGGTCTTTATCCCTGCACTCTGAACGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTAGCAAAGGAGAGATGGTCTTTATCCCTGCACTCTGAACGAAG  750

seq1  AGTTCTGAGACTGTCCCGGACCTGAAATCCCCGTGTGTCCATGAAGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGAGACTGTCCCGGACCTGAAATCCCCGTGTGTCCATGAAGCAGA  800

seq1  CGGGAACCAAGAGGAAACGCTCTAGTTCTCAGACTCGAAGAGCGGAAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAACCAAGAGGAAACGCTCTAGTTCTCAGACTCGAAGAGCGGAAGGC  850

seq1  AAAACCCACCGAATTCTCTGAACCTTTTTCAAGCATCAAAGACTGGGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCACCGAATTCTCTGAACCTTTTTCAAGCATCAAAGACTGGGAGG  900

seq1  GAAGAGGTGGGAAACCAAGTACAGAAGCGGCACCCAGAATCCCCAAGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTGGGAAACCAAGTACAGAAGCGGCACCCAGAATCCCCAAGGTT  950

seq1  TGTCCATTTCTATGTAGCACGCCACACCTTTTT--CTCACAATGGCCCCA  998
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  TGTCCATTTCTATGTAGCACGCCACACCTTTTTTCTTCACAATGGCCCCA  1000

seq1  GACACTCGAAGCCTTAGTTTCTTACCCCTGCCAAATAGTTCTCCATTAAC  1048
      |||||||||  ||||||||||||||||||||| ||||| |||||| ||||
seq2  GACACTCGAGCCCTTAGTTTCTTACCCCTGCC-AATAG-TCTCCA-TAAC  1047

seq1  A-CCCACAAATGCTACTTAT-GTGAATTATCAGTATCCACTTAGGGCT-A  1095
      | |||||||||||||||||| ||| | ||||||| ||||||||||||| |
seq2  ACCCCACAAATGCTACTTATGGTGGA-TATCAGTTTCCACTTAGGGCTAA  1096

seq1  TCAAGGTTTTTT-  1107
      || ||| ||||| 
seq2  TCCAGGGTTTTTT  1109


seq1: chr10_91964084_91964742
seq2: B6Ng01-223A13.g_67_725 (reverse)

seq1  ATCTCTCCCCCCCCCCCCAAGCCTGATTCTCCTGCTATAGGTCATTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCCCCCCCCCCCAAGCCTGATTCTCCTGCTATAGGTCATTTGTG  50

seq1  TGCAGGCAAAGATACCAACCACGTGGAGGAAGTCCTTACAACATATTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCAAAGATACCAACCACGTGGAGGAAGTCCTTACAACATATTCAG  100

seq1  CTTCAGCAATTCTTCCACCTCTGTAGATTTTGCCTTCTAAAATATTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCAATTCTTCCACCTCTGTAGATTTTGCCTTCTAAAATATTATAT  150

seq1  TACACACACACCTATACACACCCAGAGAGAGAGAGAGAGAGAGAGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACCTATACACACCCAGAGAGAGAGAGAGAGAGAGAGAGACA  200

seq1  GAGAGACAGAGAGACAGAGAGACAGAGAGACAGAGAGACAGAGACAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAGAGAGACAGAGAGACAGAGAGACAGAGAGACAGAGACAGAGA  250

seq1  CAGAGACAGAGACAGAGACAGAGACAGTGAGACAGACAGAAAGAAAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGAGACAGAGACAGAGACAGTGAGACAGACAGAAAGAAAGAGT  300

seq1  TCTTTCTACTACTTAATCACCTGAGTCCTACCTACTGCCTCGAACTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTACTACTTAATCACCTGAGTCCTACCTACTGCCTCGAACTCCCA  350

seq1  GACACCTACAACCCAGCTTTCCCCTTGCTGAGCAGAAGGTGCCTTGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTACAACCCAGCTTTCCCCTTGCTGAGCAGAAGGTGCCTTGTTTC  400

seq1  CAAAGCCATCCAGATGAAAACAGAAGACTCAGTTTGAGAAACAAAGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCATCCAGATGAAAACAGAAGACTCAGTTTGAGAAACAAAGCTTT  450

seq1  ATGACTTGCCCATTGCTGGCTCCTACTCCCATCTTACCCACACTGGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTGCCCATTGCTGGCTCCTACTCCCATCTTACCCACACTGGTGAG  500

seq1  GTCAACTCTTCACATTATTTTTTCTTCTTGCTAATGTCTATACTGTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTCTTCACATTATTTTTTCTTCTTGCTAATGTCTATACTGTCATT  550

seq1  CTCCCTCCCTTTGCTTGTGAATTCATACCTACTCTTTGACCCCCGACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCTTTGCTTGTGAATTCATACCTACTCTTTGACCCCCGACTTT  600

seq1  AATATTTCTTCCAACCACACCTGCAGACTTTCATCTTATTTGAACACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCTTCCAACCACACCTGCAGACTTTCATCTTATTTGAACACAGG  650

seq1  AATGAATTC  659
      |||||||||
seq2  AATGAATTC  659


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