BAC Information

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BAC

Clone NameB6Ng01-223F01
Chromosome10 (Build37)
Map Location 87,434,048 - 87,554,126
singlet/doubletdoublet
Overlap genePmch
Upstream geneStab2, 1700113H08Rik, Ascl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps
Downstream gene4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223F01.bB6Ng01-223F01.g
ACCGA038091GA038092
length7981,132
definitionB6Ng01-223F01.b B6Ng01-223F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,434,048 - 87,434,837)(87,553,021 - 87,554,126)
sequence
gaattcttggtatctagtgatccaaatcacaagtatcagagtcccttaca
gttgagtcaggactgaatcaataggcatacataaagattataaggcaaga
aaccagagtctatctaccattgtttttcccaaattctatgagtactatct
ttggattatcagtgacttccctagtcccaaacaatggaaaggctgagaca
aacaatgcatcatctttatgtgaaagctacacacttagccagatccccag
cctcctctagtgactggctctccttcccactcaattctccagcacaggat
acctctcctgcctgttctcctatcctgattcccacttgaattcaccctct
agcaaagtagacaccagctctggactaggccctttacccgctaacaggga
gtcttagggtctcaatttccagagttgaccaggaatgccacctgctggta
aacttttcagaacacacggccataaattctataaaagaaaaggtttatta
ctgaaggatggagccgtgccctcctagctaggcctgtcgctgaagactca
aatctgtctgcggatggtccctggcatcagctgacttagtgactctttgg
gcccctctccgttttagaaagttccatcttctgcttttctgatctcaagt
taaactattatcttagaaacacatgaggaagggataaaggcagttggaac
aggtctttgctaactgggtcactggagaggtggggttcttatctgttgcc
cctttcctcttttccagcctagaaccctagtgccctttttaaaggaca
gaattcttattgtcatcatcgttcatgaaaccgctctcgtcgtttttgta
ttgttccagagaaggggcgacaacggatctttctgcagtatcttccttct
gaaaggctttccccattcgaaatgtattaaatactatgtcatcttccaaa
ttccttatggacttggaagctgaaagtaaaataccttgagaaaacaaaga
aaaagccagcattaacatgtaggaagagagagtcatctttgccatcctta
gtttgatgcttgcataaagccaaacaagagtgcattggatgaaaactttc
acactctgccagtggctaaatgatccccacctttatatactttctgtctg
aatagaaagcacttgaaggccttatcttttcagtttagaaatgactcacc
ccgtagagcctttgtaaagctgcgaatgcttgcattgttttggatttagt
ggcctgttgtttatttcgtgtgtaaattttctcagaatctgattaaggtc
tttgagagaaggctttctgtgagtagattataggctcttcaaagtgggat
gttattaaggaagaccacaggataccaggctcgcctgctattacagtttc
cttctgcgtattttctgattaagatattaaaacatgttatttaattcatg
gataataagataaaagttttatgccctttttaatccttattaaatagaag
ttatctctagaaaagagcttcctttataaatacttgatatggtcttttgt
gattaaagtacatatacttgtccgtataaacaacaacagcaaaacctgtt
cacacttcttcatctaaaacttatctgtctgctgtttttatctgagtttc
ctcctattgcatttagtaaataattgataaaaagtctgtgagaagaatta
ttcatggtctccataaggagtagttttaaaagttttaggttttttgcctt
cattttctatttatggagacagggtccttgcctattgtagcccttgcctg
ggcctttaatttatggctaatccctctctaccctcatccctgccaagtgg
ctgggccttacaagggtattgtgctgtgcctaccaatcaacagcttaagt
aaatttgggttttttaaaggcatatttcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_87434048_87434837
seq2: B6Ng01-223F01.b_51_848

seq1  GAATTCTTGGTATCTAGTGATCCAAATCACAAGTATCAGAGTCCCTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTATCTAGTGATCCAAATCACAAGTATCAGAGTCCCTTACA  50

seq1  GTTGAGTCAGGACTGAATCAATAGGCATACATAAAGATTATAAGGCAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTCAGGACTGAATCAATAGGCATACATAAAGATTATAAGGCAAGA  100

seq1  AACCAGAGTCTATCTACCATTGTTTTTCCCAAATTCTATGAGTACTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGTCTATCTACCATTGTTTTTCCCAAATTCTATGAGTACTATCT  150

seq1  TTGGATTATCAGTGACTTCCCTAGTCCCAAACAATGGAAAGGCTGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTATCAGTGACTTCCCTAGTCCCAAACAATGGAAAGGCTGAGACA  200

seq1  AACAATGCATCATCTTTATGTGAAAGCTACACACTTAGCCAGATCCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGCATCATCTTTATGTGAAAGCTACACACTTAGCCAGATCCCCAG  250

seq1  CCTCCTCTAGTGACTGGCTCTCCTTCCCACTCAATTCTCCAGCACAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCTAGTGACTGGCTCTCCTTCCCACTCAATTCTCCAGCACAGGAT  300

seq1  ACCTCTCCTGCCTGTTCTCCTATCCTGATTCCCACTTGAATTCACCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCCTGCCTGTTCTCCTATCCTGATTCCCACTTGAATTCACCCTCT  350

seq1  AGCAAAGTAGACACCAGCTCTGGACTAGGCCCTTTACCCGCTAACAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTAGACACCAGCTCTGGACTAGGCCCTTTACCCGCTAACAGGGA  400

seq1  GTCTTAGGGTCTCAATTTCCAGAGTTGACCAGGAATGCCACCTGCTGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGGGTCTCAATTTCCAGAGTTGACCAGGAATGCCACCTGCTGGTA  450

seq1  AACTTTTCAGAACACACGGCCATAAATTCTATAAAAGAAAAGGTTTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCAGAACACACGGCCATAAATTCTATAAAAGAAAAGGTTTATTA  500

seq1  CTGAAGGATGGAGCCGTGCCCTCCTAGCTAGGCCTGTCGCTGAAGACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGATGGAGCCGTGCCCTCCTAGCTAGGCCTGTCGCTGAAGACTCA  550

seq1  AATCTGTCTGCGGATGGTCCCTGGCATCAGCTGACTTAGTGACTCTTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTCTGCGGATGGTCCCTGGCATCAGCTGACTTAGTGACTCTTTGG  600

seq1  GCCCCTCTCCG-TTTAGAAAGTTCCATC-TCTGC-TTTCTGATCTCAAGT  647
      ||||||||||| |||||||||||||||| ||||| |||||||||||||||
seq2  GCCCCTCTCCGTTTTAGAAAGTTCCATCTTCTGCTTTTCTGATCTCAAGT  650

seq1  TAAACTATTATCTTAGAAACACATGAGGAAGGGATAAAGGCAGTTGGAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATTATCTTAGAAACACATGAGGAAGGGATAAAGGCAGTTGGAAC  700

seq1  AGGTC-TTGCTAACTGGGTCACTGGAGAGGTGGGGTTCTTATCTGTTGCC  746
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTTGCTAACTGGGTCACTGGAGAGGTGGGGTTCTTATCTGTTGCC  750

seq1  CCTTTCCTC-TTTCCAGCCTAGAA-CCTAG-GCCC-TTTTAAAGGACA  790
      ||||||||| |||||||||||||| ||||| |||| ||||||||||||
seq2  CCTTTCCTCTTTTCCAGCCTAGAACCCTAGTGCCCTTTTTAAAGGACA  798

seq1: chr10_87553021_87554126
seq2: B6Ng01-223F01.g_68_1199 (reverse)

seq1  TTTTGAAATATGCTTTTAAAAA--CACAATTT--CTAAGCTGGTGA-TGG  45
      ||||||||||||| ||||||||  |  |||||   ||||||| ||| |||
seq2  TTTTGAAATATGCCTTTAAAAAACCCAAATTTACTTAAGCTGTTGATTGG  50

seq1  T-GGCACAGCAC-ATACC--TGTAA-GCCCAG-CACTTGGCAGGG-TGA-  87
      | |||||||||| |||||  ||||| |||||| |||||||||||| ||| 
seq2  TAGGCACAGCACAATACCCTTGTAAGGCCCAGCCACTTGGCAGGGATGAG  100

seq1  GGTAG-GA-GGATT-GCCATAAATTTAAGGCC--AGCCAGGGCTAC-ATA  131
      ||||| || ||||| |||||||||| ||||||   || |||||||| |||
seq2  GGTAGAGAGGGATTAGCCATAAATTAAAGGCCCAGGCAAGGGCTACAATA  150

seq1  -GCAA-GACCCTGTCTCAATAAATAG-AAATGAA-GCAAAAAACCTAAAA  177
       |||| ||||||||||| |||||||| ||||||| |||||||||||||||
seq2  GGCAAGGACCCTGTCTCCATAAATAGAAAATGAAGGCAAAAAACCTAAAA  200

seq1  CTTCTAAAACTACTCCTTATGGAGACCATGAAT-ATTCTTCTCACAGACT  226
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTTTAAAACTACTCCTTATGGAGACCATGAATAATTCTTCTCACAGACT  250

seq1  TTTTATCAATTATTTACTAAATGCATTAGGAGG-AACTCAGATAAAAACA  275
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  TTTTATCAATTATTTACTAAATGCAATAGGAGGAAACTCAGATAAAAACA  300

seq1  GCAGACAGATAAGTTTTAGATGAAGAAGTGTGAACAGGTTTTGCTGTTGT  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGATAAGTTTTAGATGAAGAAGTGTGAACAGGTTTTGCTGTTGT  350

seq1  TGTTTATACGGACAAGTATATGTACTTTAATCACAAAAGACCATATCAAG  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATACGGACAAGTATATGTACTTTAATCACAAAAGACCATATCAAG  400

seq1  TATTTATAAAGGAAGCTCTTTTCTAGAGATAACTTCTATTTAATAAGGAT  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAAAGGAAGCTCTTTTCTAGAGATAACTTCTATTTAATAAGGAT  450

seq1  T-AAAAGGGCATAAAACTTTTATCTTATTATCCATGAATTAAATAACATG  474
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGGCATAAAACTTTTATCTTATTATCCATGAATTAAATAACATG  500

seq1  TTTTAATATCTTAATCAGAAAATACGCAGAAGGAAACTGTAATAGCAGGC  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATATCTTAATCAGAAAATACGCAGAAGGAAACTGTAATAGCAGGC  550

seq1  GAGCCTGGTATCCTGTGGTCTTCCTTAATAACATCCCACTTTGAAGAGCC  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGTATCCTGTGGTCTTCCTTAATAACATCCCACTTTGAAGAGCC  600

seq1  TATAATCTACTCACAGAAAGCCTTCTCTCAAAGACCTTAATCAGATTCTG  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTACTCACAGAAAGCCTTCTCTCAAAGACCTTAATCAGATTCTG  650

seq1  AGAAAATTTACACACGAAATAAACAACAGGCCACTAAATCCAAAACAATG  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTTACACACGAAATAAACAACAGGCCACTAAATCCAAAACAATG  700

seq1  CAAGCATTCGCAGCTTTACAAAGGCTCTACGGGGTGAGTCATTTCTAAAC  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATTCGCAGCTTTACAAAGGCTCTACGGGGTGAGTCATTTCTAAAC  750

seq1  TGAAAAGATAAGGCCTTCAAGTGCTTTCTATTCAGACAGAAAGTATATAA  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGATAAGGCCTTCAAGTGCTTTCTATTCAGACAGAAAGTATATAA  800

seq1  AGGTGGGGATCATTTAGCCACTGGCAGAGTGTGAAAGTTTTCATCCAATG  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGATCATTTAGCCACTGGCAGAGTGTGAAAGTTTTCATCCAATG  850

seq1  CACTCTTGTTTGGCTTTATGCAAGCATCAAACTAAGGATGGCAAAGATGA  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGTTTGGCTTTATGCAAGCATCAAACTAAGGATGGCAAAGATGA  900

seq1  CTCTCTCTTCCTACATGTTAATGCTGGCTTTTTCTTTGTTTTCTCAAGGT  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTTCCTACATGTTAATGCTGGCTTTTTCTTTGTTTTCTCAAGGT  950

seq1  ATTTTACTTTCAGCTTCCAAGTCCATAAGGAATTTGGAAGATGACATAGT  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTTTCAGCTTCCAAGTCCATAAGGAATTTGGAAGATGACATAGT  1000

seq1  ATTTAATACATTTCGAATGGGGAAAGCCTTTCAGAAGGAAGATACTGCAG  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATACATTTCGAATGGGGAAAGCCTTTCAGAAGGAAGATACTGCAG  1050

seq1  AAAGATCCGTTGTCGCCCCTTCTCTGGAACAATACAAAAACGACGAGAGC  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCCGTTGTCGCCCCTTCTCTGGAACAATACAAAAACGACGAGAGC  1100

seq1  GGTTTCATGAACGATGATGACAATAAGAATTC  1106
      ||||||||||||||||||||||||||||||||
seq2  GGTTTCATGAACGATGATGACAATAAGAATTC  1132