BAC Information

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BAC

Clone NameB6Ng01-223L03
Chromosome10 (Build37)
Map Location 54,351,713 - 54,486,799
singlet/doubletdoublet
Overlap geneLOC100041898
Upstream gene4930589M24Rik, Man1a
Downstream geneLOC382460, LOC100041927
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223L03.bB6Ng01-223L03.g
ACCGA038361GA038362
length1,1871,156
definitionB6Ng01-223L03.b B6Ng01-223L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,485,619 - 54,486,799)(54,351,713 - 54,352,872)
sequence
gaattcagacccaccctcactttgcttgctactagcactcactttaattg
tctactttcttgcccatgtaatgcgtgggagtcttagtgattggagagcc
tctttgcttgctcagcatgactttgcaacctcaaatggcatgggactgta
cagaaatgtttgtgaagatgactccctttatagattttgtgagttagctt
caatctgattaagcatgtttaattttcttaattgggatcaagaaagctgc
aggctttcaaatgacagtggcacttattaggattgccttgaatgataaca
acagaagtgggaattaagtttgttattaacacagattggaagagatctat
acgtgaaaaaggaatcatgccagttggaaacagaacattatcgccttgta
attgaaatatgagcatatccgcgcaggatacatatatgccatttagaatg
tgaagagttacctgggagacatgttggaacttcctccttatgggttgtaa
ttaaaacaaaggaatttccattcacaccaatcctggaaaagttatttcag
agccttatatttagaaaagaaatagctctgttatttttttttcaaacact
aaaggatatgaaagaactatgccttctttctccagtggtgattgttttct
taataaagggctgaggtaaaattaaacagaagaaaaaaggaggcagagga
aagaaagaattgaacagacagggattctaattttaaaaattatttggcaa
gaatgctttactttcaaaaccaatttgcatgcatggttagttactgacca
acaccaaagaaagaataactgattccttcccctccttccagagctgaggg
tgcactatggtaatcatgatgtcctctagttaccctctgtcaacattcgg
tcctgacactcaaatctctgcaaagaacttgttcaaataacaaacaatga
aaggggtcctagaagaacctaagtttttcttcatgaaagaattcttaaga
gtacccaagaactataatctcccagatcattaaacctagactctaaggaa
tagaaataattgcatctttatttttttattttcaagagggcaatctaatg
aagtcaagggtgtcaccatcatactttccctaacctcattcatcaccaga
aaaaagaccttcactgaacaggcaaagaaatttacat

gaattcagcagatggatgacatacagtcacctagagaaatgaggttcaat
ctctttacaagtcttttcaggttcaatctctttacaagtcttttctcctt
gattggttttaggctttaacgctgattcccaagcatagacaccagtcttt
aatgtgggtagcaatagtaacaagagacttcagagagtgagcatggatct
ctttttactgtggtaaaaatcagccacatccagacaacaggttgttaatg
caacccaaccccaggactcaccagcaaagctacttctcagttttatattg
gaacacaagacccagaacatgagtatgaatttttattgtatgcaccaact
gtgaaaatacatatatatcatttttcatttactgtagactaacaaagtag
ataacttcaaataaaggcaggaaaatattggtcccttagcaataatttct
ttcttgaatatatatatcttaccccatcttttattatggttagttatttt
tttttctctcagaaggctgagtcctcagagtgcagatattatgttattta
tctctgtcacctgaaatgtctagcatattgctttcaaaatgatggttttc
aataaaaggtttgttggtaggaacataattaaatttgcacattatttagt
catctgtgaggccagtcagtttgtggtgcctggaactgggttcttctctc
tagagaggaaggcactgtgaccagaagactctaaggactatttatgcatt
gtcttacccaattattagtgactacttactactgtggaaaatcagctgtg
gaagcatcagctctccaaagattgcccaggtagaaaatatcatcatcaag
atgcacactttagtgtgcttcaggccctggtatatgaactactttgtggc
tgttcatgttgattctatttaacttctcccttaagattgtaaaaatggga
aaacaaaatatctttatctttgagcaccccttattttaaacagacttttt
gtgttaatctgtcatcccccaacaccatgaacgtcagcagggcaagttca
tcttcttatattataggtgtaggtactgcgtttaggaaagtgtgatttcc
ccagagttcacagagctcgtaatccggagcctgcactagtatcttggagt
tcagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_54485619_54486799
seq2: B6Ng01-223L03.b_47_1233 (reverse)

seq1  ATGTAA--TTCTTTG-CTGTTCAGTGAAAGTCTTTTTTCTTGGTTGATGG  47
      ||||||  ||||||| |||||||||||| |||||||||||  | ||||| 
seq2  ATGTAAATTTCTTTGCCTGTTCAGTGAAGGTCTTTTTTCT--GGTGATGA  48

seq1  ATGA-GTTAGGGAAAGGTATGATGGTGACACCCTTGACTTTCATTTAGAT  96
      |||| |||||||||| |||||||||||||||||||||| |||| ||||| 
seq2  ATGAGGTTAGGGAAA-GTATGATGGTGACACCCTTGAC-TTCA-TTAGA-  94

seq1  TTGCCCTCTTGAA---ATAAAAATAAAGATTGCATTTATTTCTATTCCTT  143
      |||||||||||||   | ||||||||||| |||| |||||||||||||||
seq2  TTGCCCTCTTGAAAATAAAAAAATAAAGA-TGCAATTATTTCTATTCCTT  143

seq1  AGAGTCTAGG-TTAATGATCTGGGAGATTATAGTTCTTGGGTACTCTTAA  192
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTAGGTTTAATGATCTGGGAGATTATAGTTCTTGGGTACTCTTAA  193

seq1  G-ATTCTTTCATGA--GAAAACTTAGGTTCTTCTAGGACCCC-TTCATTG  238
      | ||||||||||||   ||||||||||||||||||||||||| |||||||
seq2  GAATTCTTTCATGAAGAAAAACTTAGGTTCTTCTAGGACCCCTTTCATTG  243

seq1  -TTGTTATTTGAACAAGTTCTTTGCAGAGATTTGAGTGTCAGGACCGAAT  287
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTTGAACAAGTTCTTTGCAGAGATTTGAGTGTCAGGACCGAAT  293

seq1  GTTGACAGAGGGTAACTAGAGGACATCATGATTACCATAGTGCACCCTCA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAGAGGGTAACTAGAGGACATCATGATTACCATAGTGCACCCTCA  343

seq1  GCTCTGGAAGGAGGGGAAGGAATCAGTTATTCTTTCTTTGGTGTTGGTCA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGAAGGAGGGGAAGGAATCAGTTATTCTTTCTTTGGTGTTGGTCA  393

seq1  GTAACTAACCATGCATGCAAATTGGTTTTGAAAGTAAAGCATTCTTGCCA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTAACCATGCATGCAAATTGGTTTTGAAAGTAAAGCATTCTTGCCA  443

seq1  AATAATTTTTAAAATTAGAATCCCTGTCTGTTCAATTCTTTCTTTCCTCT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTTAAAATTAGAATCCCTGTCTGTTCAATTCTTTCTTTCCTCT  493

seq1  GCCTCCTTTTTTCTTCTGTTTAATTTTACCTCAGCCCTTTATTAAGAAAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTTTTTTCTTCTGTTTAATTTTACCTCAGCCCTTTATTAAGAAAA  543

seq1  CAATCACCACTGGAGAAAGAAGGCATAGTTCTTTCATATCCTTTAGTGTT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACCACTGGAGAAAGAAGGCATAGTTCTTTCATATCCTTTAGTGTT  593

seq1  TGAAAAAAAAATAACAGAGCTATTTCTTTTCTAAATATAAGGCTCTGAAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAAATAACAGAGCTATTTCTTTTCTAAATATAAGGCTCTGAAA  643

seq1  TAACTTTTCCAGGATTGGTGTGAATGGAAATTCCTTTGTTTTAATTACAA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTCCAGGATTGGTGTGAATGGAAATTCCTTTGTTTTAATTACAA  693

seq1  CCCATAAGGAGGAAGTTCCAACATGTCTCCCAGGTAACTCTTCACATTCT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAAGGAGGAAGTTCCAACATGTCTCCCAGGTAACTCTTCACATTCT  743

seq1  AAATGGCATATATGTATCCTGCGCGGATATGCTCATATTTCAATTACAAG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCATATATGTATCCTGCGCGGATATGCTCATATTTCAATTACAAG  793

seq1  GCGATAATGTTCTGTTTCCAACTGGCATGATTCCTTTTTCACGTATAGAT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATAATGTTCTGTTTCCAACTGGCATGATTCCTTTTTCACGTATAGAT  843

seq1  CTCTTCCAATCTGTGTTAATAACAAACTTAATTCCCACTTCTGTTGTTAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAATCTGTGTTAATAACAAACTTAATTCCCACTTCTGTTGTTAT  893

seq1  CATTCAAGGCAATCCTAATAAGTGCCACTGTCATTTGAAAGCCTGCAGCT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAGGCAATCCTAATAAGTGCCACTGTCATTTGAAAGCCTGCAGCT  943

seq1  TTCTTGATCCCAATTAAGAAAATTAAACATGCTTAATCAGATTGAAGCTA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATCCCAATTAAGAAAATTAAACATGCTTAATCAGATTGAAGCTA  993

seq1  ACTCACAAAATCTATAAAGGGAGTCATCTTCACAAACATTTCTGTACAGT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAAAATCTATAAAGGGAGTCATCTTCACAAACATTTCTGTACAGT  1043

seq1  CCCATGCCATTTGAGGTTGCAAAGTCATGCTGAGCAAGCAAAGAGGCTCT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCCATTTGAGGTTGCAAAGTCATGCTGAGCAAGCAAAGAGGCTCT  1093

seq1  CCAATCACTAAGACTCCCACGCATTACATGGGCAAGAAAGTAGACAATTA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCACTAAGACTCCCACGCATTACATGGGCAAGAAAGTAGACAATTA  1143

seq1  AAGTGAGTGCTAGTAGCAAGCAAAGTGAGGGTGGGTCTGAATTC  1181
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTGCTAGTAGCAAGCAAAGTGAGGGTGGGTCTGAATTC  1187


seq1: chr10_54351713_54352872
seq2: B6Ng01-223L03.g_65_1220

seq1  GAATTCAGCAGATGGATGACATACAGTCACCTAGAGAAATGAGGTTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGATGGATGACATACAGTCACCTAGAGAAATGAGGTTCAAT  50

seq1  CTCTTTACAAGTCTTTTCAGGTTCAATCTCTTTACAAGTCTTTTCTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTACAAGTCTTTTCAGGTTCAATCTCTTTACAAGTCTTTTCTCCTT  100

seq1  GATTGGTTTTAGGCTTTAACGCTGATTCCCAAGCATAGACACCAGTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTTTTAGGCTTTAACGCTGATTCCCAAGCATAGACACCAGTCTTT  150

seq1  AATGTGGGTAGCAATAGTAACAAGAGACTTCAGAGAGTGAGCATGGATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGGTAGCAATAGTAACAAGAGACTTCAGAGAGTGAGCATGGATCT  200

seq1  CTTTTTACTGTGGTAAAAATCAGCCACATCCAGACAACAGGTTGTTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTACTGTGGTAAAAATCAGCCACATCCAGACAACAGGTTGTTAATG  250

seq1  CAACCCAACCCCAGGACTCACCAGCAAAGCTACTTCTCAGTTTTATATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAACCCCAGGACTCACCAGCAAAGCTACTTCTCAGTTTTATATTG  300

seq1  GAACACAAGACCCAGAACATGAGTATGAATTTTTATTGTATGCACCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAAGACCCAGAACATGAGTATGAATTTTTATTGTATGCACCAACT  350

seq1  GTGAAAATACATATATATCATTTTTCATTTACTGTAGACTAACAAAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAATACATATATATCATTTTTCATTTACTGTAGACTAACAAAGTAG  400

seq1  ATAACTTCAAATAAAGGCAGGAAAATATTGGTCCCTTAGCAATAATTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTCAAATAAAGGCAGGAAAATATTGGTCCCTTAGCAATAATTTCT  450

seq1  TTCTTGAATATATATATCTTACCCCATCTTTTATTATGGTTAGTTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAATATATATATCTTACCCCATCTTTTATTATGGTTAGTTATTTT  500

seq1  TTTTTCTCTCAGAAGGCTGAGTCCTCAGAGTGCAGATATTATGTTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTCAGAAGGCTGAGTCCTCAGAGTGCAGATATTATGTTATTTA  550

seq1  TCTCTGTCACCTGAAATGTCTAGCATATTGCTTTCAAAATGATGGTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCACCTGAAATGTCTAGCATATTGCTTTCAAAATGATGGTTTTC  600

seq1  AATAAAAGGTTTGTTGGTAGGAACATAATTAAATTTGCACATTATTTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGGTTTGTTGGTAGGAACATAATTAAATTTGCACATTATTTAGT  650

seq1  CATCTGTGAGGCCAGTCAGTTTGTGGTGCCTGGAACTGGGTTCTTCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGAGGCCAGTCAGTTTGTGGTGCCTGGAACTGGGTTCTTCTCTC  700

seq1  TAGAGAGGAAGGCACTGTGACCAGAAGACTCTAAGGACTATTTATGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGGAAGGCACTGTGACCAGAAGACTCTAAGGACTATTTATGCATT  750

seq1  GTCTTACCCAATTATTAGTGACTACTTACTACTGTGGAAAATCAGCTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACCCAATTATTAGTGACTACTTACTACTGTGGAAAATCAGCTGTG  800

seq1  GAAGCATCAGCTCTCCAAAGATTGCCCAGGTAGAAAATATCATCATCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATCAGCTCTCCAAAGATTGCCCAGGTAGAAAATATCATCATCAAG  850

seq1  ATGCACACTTTAGTGTGCTTCAGGGCCTGGTATATGAACTACTTTGTGGC  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGCACACTTTAGTGTGCTTCAGGCCCTGGTATATGAACTACTTTGTGGC  900

seq1  TGTTCATGTTGATTCTA-TTAACTTCTCCCTTAAGATTGTAAAAATGGGA  949
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTTCATGTTGATTCTATTTAACTTCTCCCTTAAGATTGTAAAAATGGGA  950

seq1  AAACAAAAATATCTTTATCTTTGAGGCACCCCTTATTTTAAACAGACTTT  999
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAC-AAAATATCTTTATCTTTGA-GCACCCCTTATTTTAAACAGACTTT  998

seq1  TTGTGTTAATCTGTCATCCCCCAACAACCATGAAAGGTCAGCAGGGCAAG  1049
      ||||||||||||||||||||||||| |||||| || ||||||||||||||
seq2  TTGTGTTAATCTGTCATCCCCCAAC-ACCATG-AACGTCAGCAGGGCAAG  1046

seq1  TTTCATCT--CTATATTATAGGTGTAGTTACTGGCGTTAAGAAAGGTTGT  1097
       |||||||   |||||||||||||||| |||||   ||| |||||  |||
seq2  -TTCATCTTCTTATATTATAGGTGTAGGTACTGCGTTTAGGAAAG--TGT  1093

seq1  GATTTCCCCAGAG-TCACAGAGCTCGTAATCGGAAAGGCTTGCACTAGAA  1146
      ||||||||||||| ||||||||||||||||| | |  || |||||||| |
seq2  GATTTCCCCAGAGTTCACAGAGCTCGTAATCCGGA--GCCTGCACTAGTA  1141

seq1  TCCT-GAGTTCAGGA  1160
      || | ||||||||||
seq2  TCTTGGAGTTCAGGA  1156


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