BAC Information

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BAC

Clone NameB6Ng01-223O11
Chromosome10 (Build37)
Map Location 42,031,229 - 42,160,111
singlet/doubletdoublet
Overlap geneLace1, LOC666540
Upstream geneLOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik, Sesn1, Armc2, 1700016J18Rik, LOC624784, Foxo3a
Downstream geneSnx3, Nr2e1, c222389, Ostm1, Sec63, Scml4, EG666569, C230040G06, Sobp, 9030612E09Rik, Pdss2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223O11.bB6Ng01-223O11.g
ACCGA038517GA038518
length1,033748
definitionB6Ng01-223O11.b B6Ng01-223O11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,159,076 - 42,160,111)(42,031,229 - 42,031,978)
sequence
ggaattctatggagctttcaagcctgaaatccacaaatatctgtaccaag
ttacttcaccagttgggatttaggaataggcagcttccttaggaacatgt
cttcattggttgaggtattctactatggcaggggacttgccttgcctatc
actcatgttttaacttgccaaccaggatgtcagttacccaagtgcatgag
tgtttctgccaagtaggatgttaattcccagggaggtcttgggaacttaa
aactttactcaaccactactcaaagtagaactgttatcccaaatgggttc
ttatagtggtacaggtgtctctcttatattggggttatcccaagggcagc
ttatgaaggcaaaaaccataaaagctcgtccagaggtgcaggaagtgctg
cctggtggttggtttgggcccaagtttattgcagctaactatacaaagca
gttctaactgacctcgattgtgattggtttccaagagcaccaaagcacag
aacataacagaatatgccatcaactcaggcgtgagaaagtttcctagtaa
cggtagtaacagtataaaatggctggctagacaggcagcagctacctagg
ccttgacaccccagttttctaacacagaaatgctttcaaaagatttctag
ctggacagtggtgtgcacaccattaatccccatactcaaggaggcagagg
caggcagatctttgtgagtttgaggccaatctggtctactgagcaagttt
cagacagccagggctgcatagagaaaccctatctggaaaacaaaagaaca
aaaacaaaaaccaaaaaaaaaaccaaaaaccaaaaaaccaaaacaacccc
cctcaaaaaaaccaaatccaaatgagacagagagagagagagagagagag
agagagacgagagagacagagagagacagagagagagagagagacgagag
agagagactgactgactgacgacgacgaaatatttaacattgcaaatata
cattagagacttttaggttttatatagtttcaa
gaattcagtgtctcacttcaggaaaagtatcttccaggtagtgatatagt
tcagtggtgcagcacttgcctagcataggggaagaccccgagtttggtag
ccagcatcacaaaaatccatctgcccacccacctacccatccatccatcc
atccatccatccatccatctcctatacatccatcatccagctgccatttg
tccacccattcacctgcccatccatccacccttctatccatccatctgcc
acccacccatccatctatccacccaccgacccatccatccattgccaccc
atccatccacccttccatttacccatccatccatcatccatctgccaacc
atccacccatccaaccatccatccatccatccatccatccatctgtatga
tcatacatacagtcataccacatttaacgttcagaagccctaattcagac
ttttccaatgcttggcttctctggttatctctctgcttgacataaaagag
ttaatatctaaaatagaatgtggacagatcattaaatgacaaatagcctc
atggaatgtatttatattgatacgaggcacatgactgactactctcccaa
acagttgattttcacatgggggggggggtcatagtttttcttttctgaaa
aggaattaaggtttttaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtggaaatacaggctttgggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_42159076_42160111
seq2: B6Ng01-223O11.b_57_1082 (reverse)

seq1  TTGAAACCTAATATAAAACCTAAAAAGTCTCTAAATGTATATTTGCAATG  50
      |||||||   ||||||||||| |||||||||| |||||||||||||||||
seq2  TTGAAAC--TATATAAAACCT-AAAAGTCTCT-AATGTATATTTGCAATG  46

seq1  TTAAATATTTCTGTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTGTCT  100
      ||||||||||| ||| ||| ||| ||| ||| ||||||||||||| ||||
seq2  TTAAATATTTC-GTC-GTC-GTCAGTCAGTCAGTCTCTCTCTCTC-GTCT  92

seq1  CTCTCTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTCTCTCT  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCTCTCTCTCTCTGTCTCTCTCTGTCTCTCTC-GTCTCTCTCTCTCTCT  141

seq1  CTCTCTCTCTCTCTGTCTCATTTGGATTTGGTTTTTTTGAGGGGGGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTGTCTCATTTGGATTTGGTTTTTTTGAGGGGGGTTGT  191

seq1  TTTGGTTTTTTGGTTTTTGGTTTTTTTTTTGGTTTTTGTTTTTGTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTTTGGTTTTTGGTTTTTTTTTTGGTTTTTGTTTTTGTTCTTT  241

seq1  TGTTTTCCAGATAGGGTTTCTCTATGCAGCCCTGGCTGTCCTGAAACTTG  300
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGTTTTCCAGATAGGGTTTCTCTATGCAGCCCTGGCTGT-CTGAAACTTG  290

seq1  CTCAGTAGACCAGATTGGCCTCAAACTCACAAAGATCTGCCTGCCTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAGACCAGATTGGCCTCAAACTCACAAAGATCTGCCTGCCTCTGC  340

seq1  CTCCTTGAGTATGGGGATTAATGGTGTGCACACCACTGTCCAGCTAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGAGTATGGGGATTAATGGTGTGCACACCACTGTCCAGCTAGAAA  390

seq1  TCTTTTGAAAGCATTTCTGTGTTAGAAAACTGGGGTGTCAAGGCCTAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAAAGCATTTCTGTGTTAGAAAACTGGGGTGTCAAGGCCTAGGT  440

seq1  AGCTGCTGCCTGTCTAGCCAGCCATTTTATACTGTTACTACCGTTACTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGCCTGTCTAGCCAGCCATTTTATACTGTTACTACCGTTACTAG  490

seq1  GAAACTTTCTCACGCCTGAGTTGATGGCATATTCTGTTATGTTCTGTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTCTCACGCCTGAGTTGATGGCATATTCTGTTATGTTCTGTGCT  540

seq1  TTGGTGCTCTTGGAAACCAATCACAATCGAGGTCAGTTAGAACTGCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCTCTTGGAAACCAATCACAATCGAGGTCAGTTAGAACTGCTTTG  590

seq1  TATAGTTAGCTGCAATAAACTTGGGCCCAAACCAACCACCAGGCAGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTAGCTGCAATAAACTTGGGCCCAAACCAACCACCAGGCAGCACT  640

seq1  TCCTGCACCTCTGGACGAGCTTTTATGGTTTTTGCCTTCATAAGCTGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCACCTCTGGACGAGCTTTTATGGTTTTTGCCTTCATAAGCTGCCC  690

seq1  TTGGGATAACCCCAATATAAGAGAGACACCTGTACCACTATAAGAACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATAACCCCAATATAAGAGAGACACCTGTACCACTATAAGAACCCA  740

seq1  TTTGGGATAACAGTTCTACTTTGAGTAGTGGTTGAGTAAAGTTTTAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGATAACAGTTCTACTTTGAGTAGTGGTTGAGTAAAGTTTTAAGTT  790

seq1  CCCAAGACCTCCCTGGGAATTAACATCCTACTTGGCAGAAACACTCATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGACCTCCCTGGGAATTAACATCCTACTTGGCAGAAACACTCATGC  840

seq1  ACTTGGGTAACTGACATCCTGGTTGGCAAGTTAAAACATGAGTGATAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGTAACTGACATCCTGGTTGGCAAGTTAAAACATGAGTGATAGGC  890

seq1  AAGGCAAGTCCCCTGCCATAGTAGAATACCTCAACCAATGAAGACATGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGTCCCCTGCCATAGTAGAATACCTCAACCAATGAAGACATGTT  940

seq1  CCTAAGGAAGCTGCCTATTCCTAAATCCCAACTGGTGAAGTAACTTGGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGAAGCTGCCTATTCCTAAATCCCAACTGGTGAAGTAACTTGGTA  990

seq1  CAGATATTTGTGGATTTCAGGCTTGAAAGCTCCATA  1036
      ||||||||||||||||||||||||||||||||||||
seq2  CAGATATTTGTGGATTTCAGGCTTGAAAGCTCCATA  1026

seq1: chr10_42031229_42031978
seq2: B6Ng01-223O11.g_69_816

seq1  GAATTCAGTGTCTCACTTCAGGAAAAGTATCTTCCAGGTAGTGATATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTCTCACTTCAGGAAAAGTATCTTCCAGGTAGTGATATAGT  50

seq1  TCAGTGGTGCAGCACTTGCCTAGCATAGGGGAAGACCCCGAGTTTGGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTGCAGCACTTGCCTAGCATAGGGGAAGACCCCGAGTTTGGTAG  100

seq1  CCAGCATCACAAAAATCCATCTGCCCACCCACCTACCCATCCATCCATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCACAAAAATCCATCTGCCCACCCACCTACCCATCCATCCATCC  150

seq1  ATCCATCCATCCATCCATCTCCTATACATCCATCATCCAGCTGCCATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCATCCATCCATCTCCTATACATCCATCATCCAGCTGCCATTTG  200

seq1  TCCACCCATTCACCTGCCCATCCATCCACCCTTCTATCCATCCATCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCATTCACCTGCCCATCCATCCACCCTTCTATCCATCCATCTGCC  250

seq1  ACCCACCCATCCATCTATCCACCCACCGACCCATCCATCCATTGCCACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCATCCATCTATCCACCCACCGACCCATCCATCCATTGCCACCC  300

seq1  ATCCATCCACCCTTCCATTTACCCATCCATCCATCATCCATCTGCCAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCACCCTTCCATTTACCCATCCATCCATCATCCATCTGCCAACC  350

seq1  ATCCACCCATCCAACCATCCATCCATCCATCCATCCATCCATCTGTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCCATCCAACCATCCATCCATCCATCCATCCATCCATCTGTATGA  400

seq1  TCATACATACAGTCATACCACATTTAACGTTCAGAAGCCCTAATTCAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACATACAGTCATACCACATTTAACGTTCAGAAGCCCTAATTCAGAC  450

seq1  TTTTCCAATGCTTGGCTTCTCTGGTTATCTCTCTGCTTGACATAAAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAATGCTTGGCTTCTCTGGTTATCTCTCTGCTTGACATAAAAGAG  500

seq1  TTAATATCTAAAATAGAATGTGGACAGATCATTAAATGACAAATAGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATCTAAAATAGAATGTGGACAGATCATTAAATGACAAATAGCCTC  550

seq1  ATGGAATGTATTTATATTGATACGAGGCACATGACTGACTACTCTCCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATGTATTTATATTGATACGAGGCACATGACTGACTACTCTCCCAA  600

seq1  ACAGTTGATTTTCACATGGGGGGGGGGGTCATAGTTTTTCTTTTCTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGATTTTCACATGGGGGGGGGGGTCATAGTTTTTCTTTTCTGAAA  650

seq1  AGGAATTAAGGTTTTTAAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTAAGGTTTTTAAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  700

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTAAGTACAGGC-ATGGGTG  749
      |||||||||||||||||||||||||||   | || |||||||  ||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGT---GGAAATACAGGCTTTGGGTG  747

seq1  T  750
      |
seq2  T  748