BAC Information

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BAC

Clone NameB6Ng01-223P21
Chromosome10 (Build37)
Map Location 63,115,521 - 63,116,581
singlet/doubletsinglet
Overlap geneCtnna3
Upstream geneStox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906
Downstream geneLrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223P21.bB6Ng01-223P21.g
ACCGA038583GA038584
length1,1981,089
definitionB6Ng01-223P21.b B6Ng01-223P21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaccccaccctgttctgctattcacgcttaatggcaagctccta
aatgaagagtttctactagctaaggattcacttggtattgaataatctta
gtccttatttttacctatccaagttataaatgcttatttttaaaggcatt
agagtttatataatcccttttatataactgtgaaaagtcattaaatagtc
tatccaaatcttcccatcttgtagggctttgcttggttcttttccataaa
cgcacggctggttgcttcttgctatcaaagaccttaggatgagattcaac
aatgttcaacatccttaatcgtcagggaaatgcaaatcaaaacaaccctg
agattccacctcacaccagtcagaatggctaagatgaaaaattcaggtga
cagcagatgctggcgtggatgtggagaaagaggaacactcctccattgtt
ggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttc
ctcagaaaattggacatagtactaccggaggatccagcaatacctctcct
gggcatatatccagaagatgccccaactggtaagaaggacacatgctcca
ctatgttcatagcagccctacttataatagccagaagctggaaagaaccc
agatgcccctcaacagaggaatggatacagaaaatgtggtacatctacac
aatggagtactactcagctattaaaaagaatgaatttatgaaattcctag
ccaaatggatggacctggagggcatcatcctgagtgaggtaacacattca
cgaaaggaactcacacaatatgtactcactgataagtggatattagccca
aaacctaggatacccaagatataagatacaattttcctaaacacatgaaa
ctcaagaaaaatgaagactgaagtgtggacactatgccccttccttagaa
gtgggaacaaaaacactcctttggaaggagttacagagacaaagtttgga
gctgagatgaaaggatggaccatgtagagactgcaatattccagggatca
cctcataatcagcatcaacgctgaacatcattgcattaacactagcagat
ttatcgaaaggaccagatgtagctgtctcttgtgtgacttatgccaggcc
tagcaaccagaatgatctcacagtcagctatatggagtggaagtctac
gaattccaacccgttaagaatagaacgtaggtaagaaggatgaaattcca
tgctcctaaaataaagaacccccgccatgcttacatgctgcatactttta
caagatccccccctgctgtgttgcagtgcagagattccaaatcaagttga
actttactcagcacttagacaaagaaattgcctggaagttaattgtaact
gcactccaagtttcctagtgccttgctttgtgtttcaagtatgtgtactc
aaatcaatacagacacctgagcaggtcacgtgataccgtttcctttcttc
cgggcagcttgagccctctcttcaccttcagtgcttccgggaggctgcgc
caacagtaaacctccctgcaaagtcctgccaagtgccctgcttgtatgcc
tgggacttctgctgccctctgccactccataggaacgttcgaaaatcccc
caggtacgatccctggcagggtccaggtaccacatttgctgcaaaccctt
cttgtagatgacggctcctgccttgctgggtggcactgctactttgaacc
cagggtgcatgagcatctcttactgttttgggtttagaatgaaatgaagg
gaaaagaggagcaggggcctttgtctcatagacgtgctttcttcttcctt
aattggagttgccacacacacacacacacacacacacacacacacacaca
cacacacacacacggtaacaatggaacattattctgtcagactcacagtg
tatggttaccaagaggttctgaatctctagagcttttttagacctcaaaa
ttgttttagtgagaactatttttggggttcaagtttatacatacacacag
acagacacacacacacatatacacacactcacgtaatatagtttctgaaa
gacaacttttagaattaaaaaaaaaaattagttttcttttcttatataaa
gcaaaagttctgggacagaatggaagaaagtctctttcttggtccaccat
gagaacaagtgcatcagaatggctaagaaaccacaggccgtctcccggga
atggccattatttctaatcagcaagttatttagaaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_63115521_63116581
seq2: B6Ng01-223P21.g_62_1150

seq1  GAATTCCAACCCGTTAAGAATAGAACGTAGGTAAGAAGGATGAAATTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACCCGTTAAGAATAGAACGTAGGTAAGAAGGATGAAATTCCA  50

seq1  TGCTCCTAAAATAAAGAACCCCCGCCATGCTTACATGCTGCATACTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTAAAATAAAGAACCCCCGCCATGCTTACATGCTGCATACTTTTA  100

seq1  CAAGATCCCCCCCTGCTGTGTTGCAGTGCAGAGATTCCAAATCAAGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCCCCCCCTGCTGTGTTGCAGTGCAGAGATTCCAAATCAAGTTGA  150

seq1  ACTTTACTCAGCACTTAGACAAAGAAATTGCCTGGAAGTTAATTGTAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACTCAGCACTTAGACAAAGAAATTGCCTGGAAGTTAATTGTAACT  200

seq1  GCACTCCAAGTTTCCTAGTGCCTTGCTTTGTGTTTCAAGTATGTGTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCCAAGTTTCCTAGTGCCTTGCTTTGTGTTTCAAGTATGTGTACTC  250

seq1  AAATCAATACAGACACCTGAGCAGGTCACGTGATACCGTTTCCTTTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATACAGACACCTGAGCAGGTCACGTGATACCGTTTCCTTTCTTC  300

seq1  CGGGCAGCTTGAGCCCTCTCTTCACCTTCAGTGCTTCCGGGAGGCTGCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCAGCTTGAGCCCTCTCTTCACCTTCAGTGCTTCCGGGAGGCTGCGC  350

seq1  CAACAGTAAACCTCCCTGCAAAGTCCTGCCAAGTGCCCTGCTTGTATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTAAACCTCCCTGCAAAGTCCTGCCAAGTGCCCTGCTTGTATGCC  400

seq1  TGGGACTTCTGCTGCCCTCTGCCACTCCATAGGAACGTTCGAAAATCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTTCTGCTGCCCTCTGCCACTCCATAGGAACGTTCGAAAATCCCC  450

seq1  CAGGTACGATCCCTGGCAGGGTCCAGGTACCACATTTGCTGCAAACCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACGATCCCTGGCAGGGTCCAGGTACCACATTTGCTGCAAACCCTT  500

seq1  CTTGTAGATGACGGCTCCTGCCTTGCTGGGTGGCACTGCTACTTTGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGATGACGGCTCCTGCCTTGCTGGGTGGCACTGCTACTTTGAACC  550

seq1  CAGGGTGCATGAGCATCTCTTACTGTTTTGGGTTTAGAATGAAATGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGCATGAGCATCTCTTACTGTTTTGGGTTTAGAATGAAATGAAGG  600

seq1  GAAAAGAGGAGCAGGGGCCTTTGTCTCATAGACGTGCTTTCTTCTTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGGAGCAGGGGCCTTTGTCTCATAGACGTGCTTTCTTCTTCCTT  650

seq1  AATTGGAGTTGCCACACACACACACACACACACACACACACACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAGTTGCCACACACACACACACACACACACACACACACACACACA  700

seq1  CACACACACACACGGTAACAATGGAACATTATTCTGTCAGACTCACAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACGGTAACAATGGAACATTATTCTGTCAGACTCACAGTG  750

seq1  TATGGTTACCAAGAGGTTCTGAATCTCTAGAGCTTTTTTAGACCTCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTACCAAGAGGTTCTGAATCTCTAGAGCTTTTTTAGACCTCAAAA  800

seq1  TTG-TTTAGTGAGAACTA-TTTTGGGGTTCAAGTTTATACATACACACAG  848
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGTTTTAGTGAGAACTATTTTTGGGGTTCAAGTTTATACATACACACAG  850

seq1  ACAGACACACACACACATATACACACACTCACGTATTATAGTTTCTGAAA  898
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACAGACACACACACACATATACACACACTCACGTAATATAGTTTCTGAAA  900

seq1  GACAACTTTTAGAATT--AAAAAAAAATTAGTTT--CTTTCTTATAT-AA  943
      ||||||||||||||||  ||||||||||||||||   |||||||||| ||
seq2  GACAACTTTTAGAATTAAAAAAAAAAATTAGTTTTCTTTTCTTATATAAA  950

seq1  GCAAA--GTCT-GGACAG-ATGGA--GAAGTCTC-TTCTT-GTCCACCAT  985
      |||||   ||| |||||| |||||   ||||||| ||||| |||||||||
seq2  GCAAAAGTTCTGGGACAGAATGGAAGAAAGTCTCTTTCTTGGTCCACCAT  1000

seq1  GAGA--CAGTGCA-CAG-ATGGCTA--GAACCACAGGCGG--CCCCGGGA  1027
      ||||   |||||| ||| |||||||   |||||||||| |   |||||||
seq2  GAGAACAAGTGCATCAGAATGGCTAAGAAACCACAGGCCGTCTCCCGGGA  1050

seq1  --TGCCATTA-TTCTA--TAGCAAGTTA-TTAGAATATAT  1061
         ||||||| |||||   ||||||||| |||||| ||||
seq2  ATGGCCATTATTTCTAATCAGCAAGTTATTTAGAA-ATAT  1089