BAC Information

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BAC

Clone NameB6Ng01-224C20
Chromosome10 (Build37)
Map Location 48,893,556 - 48,894,720
singlet/doubletsinglet
Overlap geneGrik2
Upstream geneLOC546562, LOC100041689
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224C20.bB6Ng01-224C20.g
ACCGA038711GA038712
length1,160971
definitionB6Ng01-224C20.b B6Ng01-224C20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgtacagtgaatctttctatcagttaaaatgctctgaaaatg
tcctcacagatacaaccaaaagcttgtctcctagttgaatccaaatccca
tcaagttaatgatcaaatctccaaaatctatcttcttctgtaggaactat
agtaatttctctgttaaatcccggacacttgttgctatgtattttgatgt
cagcaaaaatagggaattgtcgcagtctcctcttgccgcagagacaagaa
cgacacagacaccaagatgggttcatgcagcttcctctttacttgcagct
ttttctacctatagctctcttcacttagggcaagagctatatttatacag
tagtggcaactgacctcatctcgctccacaccacctcacccaattagaat
cacacatgctccaggcatgagctcaggttggtcacagataggctgagaga
tctggatcacggggaataatctaacttggcgaccacacatgctttctgca
tctcccccttttcatttaattagtagctctgggatcagcatctgacttag
gttgcccccattcatgccgcatccttacccgtcatgggagtgacgaactc
actttcaccattctgtattaggttggtatgtgcacgtgagggtcttaccc
atcattgattactgatccagcatgttgagccaactttgggggggatgttc
ctgcttccaaagctgccatagcttgcactaaggctcgtttatcagccctg
tgctgccttcgcatatgtgccacccaccaaagcattcctccacacacaac
agtcatcagaacacccaaaaggccatccctccacatttttattagaatcc
cacagtttcctggatgatctctaggcattgctttgcagttgcttcatcct
ttttttcctgggaacctgacaggcctgtgcttttttaaatagcattgcta
ccaacaggatgagttccctgtaagtgccaccaattgttgcagtctaccaa
atttccccaatacaggcacacttgcgcagtctcttgactgcagagaacaa
gacgacacagaacacaagactggttcacgcagcttctctttggagctttc
tccgcagccttttttaacttaaggtagggcctattattatacaggtatgg
caacttgacc

gaattcttaaatgtccaaagacagtcctttacaggaacagtattttttct
taacttgagtagtatgtgcataaacaattgcaaatttgagaattggtagt
atctaagaaattaacaatttcaagagctgggcatgatggcacactccttt
aatcccagcactcaggaggcagaggcaagcagatttctgagttcgaggcc
agcgtggtctacaaagtgagttccaggacagccagggctatacagagaaa
ccctgtctcaaaaaaaccaaaaagaaaaaaaaaacaaaaacaaaacaatt
tcaagcaattgtaagccctgtatatataataattgtaattatatatatat
atatatatatatacatgtatatatatatatatattattagtatacaaatt
aaagcttgatttttcaacattttaaaatactggctatagcacataattta
attatctgtgctgaaggaggaggaaactttaaaagaataaacatgtgacc
aaatcacatatatttttctcccatagaagggctgtttttaaatacagttg
atgtttttttatggaatgtacgcatgaatatatttacagacaatacaaaa
gcattcatagaagcaatcgttaacaacttatcttttggataatgattgtc
aattttacctaaaaagcttgctatgcaataggccaatatcaatattctgc
aataaccaatttaattcctgtttggaacaaggaatagctgctttgtcatg
tttttaagacacagttttttgttattgattttctaaaataccttcatgat
tttatcttacaattctttattagcacccacagcagtgtcataataggatg
ttgaaactttacttggagatgaagaaaatgattttacattagtgttctct
tttgccaaacaattgctatggggcacactgagtaacaataattaaaatag
gcacctaatatttgggttacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_48893556_48894720
seq2: B6Ng01-224C20.b_47_1206 (reverse)

seq1  GGTC-AGTTGCCACTACTGTATAAATATAGCCCTTACCCTAAGTAAAAAA  49
      |||| ||||||||   ||||||||  |||| || |||| ||||| |||||
seq2  GGTCAAGTTGCCATACCTGTATAATAATAGGCCCTACCTTAAGTTAAAAA  50

seq1  AAGCTGCGGAGAAAGC-CCCAAGAGAAGCTGCGTGAACCAGTCTTGGTGT  98
      | |||||||||||||| || ||||||||||||||||||||||||||   |
seq2  AGGCTGCGGAGAAAGCTCCAAAGAGAAGCTGCGTGAACCAGTCTTGTGTT  100

seq1  CTGTGTCGTTCTTG-TCTCTGCAGGTCAGAGACTGCGGCAAGTGGTGCCT  147
      |||||||| ||||| |||||||||   ||||||||| |||||| ||||||
seq2  CTGTGTCG-TCTTGTTCTCTGCAGTCAAGAGACTGC-GCAAGT-GTGCCT  147

seq1  GTATGGGGGAAATTTTGGTAGACTGCAACAATTGGTGGCACTTACAGGGA  197
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTATTGGGGAAA-TTTGGTAGACTGCAACAATTGGTGGCACTTACAGGGA  196

seq1  ACTCATCCTGTTGGTAAGCAATGCTATTTAAAAAAAGCACAGGCCTGTCA  247
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  ACTCATCCTGTTGGT-AGCAATGCTATTT-AAAAAAGCACAGGCCTGTCA  244

seq1  GGTTCCCAGGAAAAAAAGGATGAAGCAACTGCAAAGCAATGCCTAGAGAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCAGGAAAAAAAGGATGAAGCAACTGCAAAGCAATGCCTAGAGAT  294

seq1  CATCCAGGAAACTGTGGGATTCTTAATAAAAATGTGGAGGGATGGCCTTT  347
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATCCAGGAAACTGTGGGATTC-TAATAAAAATGTGGAGGGATGGCCTTT  343

seq1  TGGGTGTTCCTGATGACTGTTGTGTGTGGAGGAATGCTTTGGTGGGTGGC  397
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTT-CTGATGACTGTTGTGTGTGGAGGAATGCTTTGGTGGGTGGC  392

seq1  ACATATGCGAAGGCAGCACAGGGCTGATAAACGAGCCTTAGTGCAAGCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGCGAAGGCAGCACAGGGCTGATAAACGAGCCTTAGTGCAAGCTA  442

seq1  TGGCAGCTTTGGAAGCAGGAACATCCCCCCCAAAGTTGGCTCAACATGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCTTTGGAAGCAGGAACATCCCCCCCAAAGTTGGCTCAACATGCT  492

seq1  GGATCAGTAATCAATGATGGGTAAGACCCTCACGTGCACATACCAACCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGTAATCAATGATGGGTAAGACCCTCACGTGCACATACCAACCTA  542

seq1  ATACAGAATGGTGAAAGTGAGTTCGTCACTCCCATGACGGGTAAGGATGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAATGGTGAAAGTGAGTTCGTCACTCCCATGACGGGTAAGGATGC  592

seq1  GGCATGAATGGGGGCAACCTAAGTCAGATGCTGATCCCAGAGCTACTAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGAATGGGGGCAACCTAAGTCAGATGCTGATCCCAGAGCTACTAAT  642

seq1  TAAATGAAAAGGGGGAGATGCAGAAAGCATGTGTGGTCGCCAAGTTAGAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAAAGGGGGAGATGCAGAAAGCATGTGTGGTCGCCAAGTTAGAT  692

seq1  TATTCCCCGTGATCCAGATCTCTCAGCCTATCTGTGACCAACCTGAGCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCCGTGATCCAGATCTCTCAGCCTATCTGTGACCAACCTGAGCTC  742

seq1  ATGCCTGGAGCATGTGTGATTCTAATTGGGTGAGGTGGTGTGGAGCGAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGAGCATGTGTGATTCTAATTGGGTGAGGTGGTGTGGAGCGAGA  792

seq1  TGAGGTCAGTTGCCACTACTGTATAAATATAGCTCTTGCCCTAAGTGAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCAGTTGCCACTACTGTATAAATATAGCTCTTGCCCTAAGTGAAG  842

seq1  AGAGCTATAGGTAGAAAAAGCTGCAAGTAAAGAGGAAGCTGCATGAACCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTATAGGTAGAAAAAGCTGCAAGTAAAGAGGAAGCTGCATGAACCC  892

seq1  ATCTTGGTGTCTGTGTCGTTCTTGTCTCTGCGGCAAGAGGAGACTGCGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGTGTCTGTGTCGTTCTTGTCTCTGCGGCAAGAGGAGACTGCGAC  942

seq1  AATTCCCTATTTTTGCTGACATCAAAATACATAGCAACAAGTGTCCGGGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCTATTTTTGCTGACATCAAAATACATAGCAACAAGTGTCCGGGA  992

seq1  TTTAACAGAGAAATTACTATAGTTCCTACAGAAGAAGATAGATTTTGGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGAGAAATTACTATAGTTCCTACAGAAGAAGATAGATTTTGGAG  1042

seq1  ATTTGATCATTAACTTGATGGGATTTGGATTCAACTAGGAGACAAGCTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATCATTAACTTGATGGGATTTGGATTCAACTAGGAGACAAGCTTT  1092

seq1  TGGTTGTATCTGTGAGGACATTTTCAGAGCATTTTAACTGATAGAAAGAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTATCTGTGAGGACATTTTCAGAGCATTTTAACTGATAGAAAGAT  1142

seq1  TCACTGTACATGGAATTC  1165
      ||||||||||||||||||
seq2  TCACTGTACATGGAATTC  1160


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