BAC Information

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BAC

Clone NameB6Ng01-224J12
Chromosome10 (Build37)
Map Location 109,473,266 - 109,605,514
singlet/doubletdoublet
Overlap geneLOC100042502
Upstream geneNav3, LOC100042497
Downstream geneLOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224J12.bB6Ng01-224J12.g
ACCGA039008GA039009
length1,138596
definitionB6Ng01-224J12.b B6Ng01-224J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,473,266 - 109,474,399)(109,604,919 - 109,605,514)
sequence
gaattcaagtatctttaaaaaatattttctttaaatatcatagtgttata
aagaaaacacagtcctgctgttttatcatatgaacgtcattcaaaggaca
catgaagagtattaaaatatatatattctagtcagcatttggaaatgatg
gcagacggaggaatgcatgatgaacaatacaaaaacagatatttaactta
gaaaaggggcaaataataccagtgttctcttatttcaaaaggccttattt
caaaaggcattatgttatcatttaaaaaaaaaatgtagtagcacatacca
gtacagagcataaaaaaaccccaaaaacaacaacaaaaaacaaacaaaca
aaaatccaaccaaacaaacaaacaaaaaatccagatacctttaattagtt
ttgagaaatgacttaagtggagacttttatttttaaacagaaggaactac
ctggcagaaatcttaagtacaaagattttttactggaaagacttcaagaa
tcccgcagcttaggtgatagcgtttgatcctaaatcccaaggcacaaatc
ttagcaatctgcacccattaagtaagattactctgctcctgatgggccct
aacttgcttcaagtgtaaacatcttcccattgcagtattcaggggctctg
ttgctaagagacctagcagaggatcagcggatgggttgctcgaggttttc
tgggactccaaaagatgcccttggatgtgatccatcacaaaaggcatcgt
caagaacatagggcacctttgggcttccttttccatttagtgttctggtc
cacctggtgagatcctgtaaggtcagtttctactcatgagagagaagatg
ctaaaggtgagcaaccaacaccaccattgtattgacataaatggggctat
tgttttattccgcctttatttttatttatttattgatttatctatttttt
tttttgtttttgctttatcatagctaccaaatgattggagtgctacttag
tgaatgtaaatactaccataagcccttttggtatgggggttgtcactact
tgggcttcagttttaacaggtaatagctatggacaaggagcagtattcta
tttaaacaggagttccgtaaatcaccaattgggtgtaa

gaattcttttctgagaagcagattctaaacagtgtcactggtggatttca
tgtatgcatgactcttttagtcttgtacattgttgtccctgtcttttaca
aaagaacccaacagctttctcttttcagtgtttctgctgtgaaagcaagc
tggtcatatgggtgcatacatgacgtttggggcattgcagcgaagaggtc
ttagaaatgagttagcagcggtgcttagtgacagagagggataaatagtc
ttttaaatgaaattcatatttcaaaggcacatgtgcccctgccctctagg
tacctgcttgctcccattattcccctttgccatttgagaggtttgcttta
tagaagaaagcagagagccattcttattattctaggcagccagattcctt
caagcaagtactcctgggagacacaaagacattgtttctagtgttcgtgg
gtaaggctatccatagtaactgtatgtgaaggaagattgtatgtgataaa
ttccacacactaccatttcatagcatagttttctgagagtttattgttcc
attataaagcgctttctctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109473266_109474399
seq2: B6Ng01-224J12.b_47_1184

seq1  GAATTCAAGTATCTTTAAAAAATATTTTCTTTAAATATCATAGTGTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTATCTTTAAAAAATATTTTCTTTAAATATCATAGTGTTATA  50

seq1  AAGAAAACACAGTCCTGCTGTTTTATCATATGAACGTCATTCAAAGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACACAGTCCTGCTGTTTTATCATATGAACGTCATTCAAAGGACA  100

seq1  CATGAAGAGTATTAAAATATATATATTCTAGTCAGCATTTGGAAATGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGAGTATTAAAATATATATATTCTAGTCAGCATTTGGAAATGATG  150

seq1  GCAGACGGAGGAATGCATGATGAACAATACAAAAACAGATATTTAACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACGGAGGAATGCATGATGAACAATACAAAAACAGATATTTAACTTA  200

seq1  GAAAAGGGGCAAATAATACCAGTGTTCTCTTATTTCAAAAGGCCTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGGCAAATAATACCAGTGTTCTCTTATTTCAAAAGGCCTTATTT  250

seq1  CAAAAGGCATTATGTTATCATTTAAAAAAAAAATGTAGTAGCACATACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCATTATGTTATCATTTAAAAAAAAAATGTAGTAGCACATACCA  300

seq1  GTACAGAGCATAAAAAAACCCCAAAAACAACAACAAAAAACAAACAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAGCATAAAAAAACCCCAAAAACAACAACAAAAAACAAACAAACA  350

seq1  AAAATCCAACCAAACAAACAAACAAAAAATCCAGATACCTTTAATTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCAACCAAACAAACAAACAAAAAATCCAGATACCTTTAATTAGTT  400

seq1  TTGAGAAATGACTTAAGTGGAGACTTTTATTTTTAAACAGAAGGAACTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAATGACTTAAGTGGAGACTTTTATTTTTAAACAGAAGGAACTAC  450

seq1  CTGGCAGAAATCTTAAGTACAAAGATTTTTTACTGGAAAGACTTCAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAAATCTTAAGTACAAAGATTTTTTACTGGAAAGACTTCAAGAA  500

seq1  TCCCGCAGCTTAGGTGATAGCGTTTGATCCTAAATCCCAAGGCACAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCAGCTTAGGTGATAGCGTTTGATCCTAAATCCCAAGGCACAAATC  550

seq1  TTAGCAATCTGCACCCATTAAGTAAGATTACTCTGCTCCTGATGGGCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATCTGCACCCATTAAGTAAGATTACTCTGCTCCTGATGGGCCCT  600

seq1  AACTTGCTTCAAGTGTAAACATCTTCCCATTGCAGTATTCAGGGGCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCTTCAAGTGTAAACATCTTCCCATTGCAGTATTCAGGGGCTCTG  650

seq1  TTGCTAAGAGACCTAGCAGAGGATCAGCGGATGGGTTGCTCGAGGTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAGAGACCTAGCAGAGGATCAGCGGATGGGTTGCTCGAGGTTTTC  700

seq1  TGGGACTCCAAAAGATGCCCTTGGATGTGATCCATCACAAAAGGCATCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCCAAAAGATGCCCTTGGATGTGATCCATCACAAAAGGCATCGT  750

seq1  CAAGAACATAGGGCACCTTTGGGCTTCCTTTTCCATTTAGTGTTCTGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACATAGGGCACCTTTGGGCTTCCTTTTCCATTTAGTGTTCTGGTC  800

seq1  CACCTGGTGAGATCCTGTAAGGTCAGTTTCTACTCATGAGAGAGAAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGTGAGATCCTGTAAGGTCAGTTTCTACTCATGAGAGAGAAGATG  850

seq1  CT-AAGGTGAGCAACCAACACCACCATTGTATTGACATAAATGGGGCTAT  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGTGAGCAACCAACACCACCATTGTATTGACATAAATGGGGCTAT  900

seq1  TGTTTTATTCCGCCTTTATTTTTATTTATTTATTGATTTATCTATTTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTCCGCCTTTATTTTTATTTATTTATTGATTTATCTATTTTTT  950

seq1  TTTTGTTTTTTTGCTTTATCATAGCTACC-AATGATT-GAGTGCTACTTA  997
      |||| | |||||||||||||||||||||| ||||||| ||||||||||||
seq2  TTTT-TGTTTTTGCTTTATCATAGCTACCAAATGATTGGAGTGCTACTTA  999

seq1  GTGAATGTAAATACTACCATAAG-CCTTTTGGTAT-GGGGTTGTCACTAC  1045
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  GTGAATGTAAATACTACCATAAGCCCTTTTGGTATGGGGGTTGTCACTAC  1049

seq1  -TGGCTTTCAGTTTTTAACAGGTAATAGGCCTATGGACAA-GAGCAGTA-  1092
       |||  ||||| ||||||||||||||||  |||||||||| |||||||| 
seq2  TTGGGCTTCAG-TTTTAACAGGTAATAG--CTATGGACAAGGAGCAGTAT  1096

seq1  TCTATT--AACA-GAGTTTCTCTTTTATATCACCAAAT-GGTGTAA  1134
      ||||||  |||| ||||| |     || |||||||| | |||||||
seq2  TCTATTTAAACAGGAGTTCC----GTAAATCACCAATTGGGTGTAA  1138


seq1: chr10_109604919_109605514
seq2: B6Ng01-224J12.g_70_665 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCGCTTTATAATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCGCTTTATAATGGAA  50

seq1  CAATAAACTCTCAGAAAACTATGCTATGAAATGGTAGTGTGTGGAATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAACTCTCAGAAAACTATGCTATGAAATGGTAGTGTGTGGAATTTA  100

seq1  TCACATACAATCTTCCTTCACATACAGTTACTATGGATAGCCTTACCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATACAATCTTCCTTCACATACAGTTACTATGGATAGCCTTACCCAC  150

seq1  GAACACTAGAAACAATGTCTTTGTGTCTCCCAGGAGTACTTGCTTGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTAGAAACAATGTCTTTGTGTCTCCCAGGAGTACTTGCTTGAAGG  200

seq1  AATCTGGCTGCCTAGAATAATAAGAATGGCTCTCTGCTTTCTTCTATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGCTGCCTAGAATAATAAGAATGGCTCTCTGCTTTCTTCTATAAA  250

seq1  GCAAACCTCTCAAATGGCAAAGGGGAATAATGGGAGCAAGCAGGTACCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCTCTCAAATGGCAAAGGGGAATAATGGGAGCAAGCAGGTACCTA  300

seq1  GAGGGCAGGGGCACATGTGCCTTTGAAATATGAATTTCATTTAAAAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAGGGGCACATGTGCCTTTGAAATATGAATTTCATTTAAAAGACT  350

seq1  ATTTATCCCTCTCTGTCACTAAGCACCGCTGCTAACTCATTTCTAAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCCCTCTCTGTCACTAAGCACCGCTGCTAACTCATTTCTAAGACC  400

seq1  TCTTCGCTGCAATGCCCCAAACGTCATGTATGCACCCATATGACCAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGCTGCAATGCCCCAAACGTCATGTATGCACCCATATGACCAGCTT  450

seq1  GCTTTCACAGCAGAAACACTGAAAAGAGAAAGCTGTTGGGTTCTTTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCACAGCAGAAACACTGAAAAGAGAAAGCTGTTGGGTTCTTTTGTA  500

seq1  AAAGACAGGGACAACAATGTACAAGACTAAAAGAGTCATGCATACATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGGGACAACAATGTACAAGACTAAAAGAGTCATGCATACATGAA  550

seq1  ATCCACCAGTGACACTGTTTAGAATCTGCTTCTCAGAAAAGAATTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCAGTGACACTGTTTAGAATCTGCTTCTCAGAAAAGAATTC  596


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